FFCP PHASE1:Hg19::chr12:120638905..120638915,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6175|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10371|TSSclassifier=S|UniProt=Q3B7A4,F8VWS0,F8VPE8,F8VYN4|association_with_transcript=0bp_to_ENST00000313104,ENST00000546989,ENST00000547191,ENST00000548495,ENST00000548551,ENST00000549098,ENST00000549242,ENST00000552461_5end|description=CAGE_peak_1_at_RPLP0_5end|id=chr12:120638905..120638915,-|ontology_enrichment_celltype=CL:0000012!2.34e-39!682;CL:0000548!8.90e-38!679;CL:0000004!8.90e-38!679;CL:0000255!8.90e-38!679;CL:0000144!1.40e-29!625;CL:0000003!4.32e-28!722;CL:0002371!6.71e-23!591;CL:0002321!3.61e-14!248;CL:0000063!4.21e-14!578;CL:0000220!7.14e-14!246;CL:0000055!2.50e-13!180;CL:0000222!3.53e-12!119;CL:0000183!3.38e-11!59;CL:0000187!3.08e-09!54;CL:0000393!3.59e-09!60;CL:0000211!3.59e-09!60;CL:0000066!3.78e-09!254;CL:0000680!1.29e-08!57;CL:0000056!1.29e-08!57;CL:0000355!1.29e-08!57;CL:0000192!9.39e-08!42;CL:0000514!9.39e-08!42;CL:0000034!6.52e-07!444|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0002321,8.53e-15,250;CL:0000222,7.30e-13,121;CL:0000187,1.19e-09,55;CL:0000393,1.43e-09,61;CL:0000211,1.43e-09,61;CL:0000680,5.20e-09,58;CL:0000056,5.20e-09,58;CL:0000355,5.20e-09,58;CL:0000066,6.96e-09,253;CL:0000192,3.62e-08,43;CL:0000514,3.62e-08,43;CL:0000034,3.50e-07,441|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000486!4.88e-10!82;UBERON:0004290!9.83e-10!70;UBERON:0000914!1.84e-09!83;UBERON:0002329!1.84e-09!83;UBERON:0003077!1.84e-09!83;UBERON:0003059!1.84e-09!83;UBERON:0007282!1.84e-09!83;UBERON:0009618!1.84e-09!83;UBERON:0007285!1.84e-09!83;UBERON:0003104!9.64e-09!238;UBERON:0009142!9.64e-09!238;UBERON:0003914!4.76e-08!118;UBERON:0005256!9.82e-08!143;UBERON:0001134!1.11e-07!61;UBERON:0002036!1.11e-07!61;UBERON:0003082!1.11e-07!61;UBERON:0002049!2.53e-07!79;UBERON:0007798!2.53e-07!79;UBERON:0004872!5.77e-07!84;UBERON:0002100!6.18e-07!216;UBERON:0001637!6.85e-07!42;UBERON:0003509!6.85e-07!42;UBERON:0004572!6.85e-07!42;UBERON:0000490!7.45e-07!138;UBERON:0002385!9.48e-07!63;UBERON:0001015!9.48e-07!63;UBERON:0000383!9.48e-07!63|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.87e-12,78;UBERON:0000486,2.04e-10,83;UBERON:0002329,3.99e-10,71;UBERON:0003059,3.99e-10,71;UBERON:0007282,3.99e-10,71;UBERON:0004290,3.99e-10,71;UBERON:0009618,3.99e-10,71;UBERON:0007524,1.25e-09,73;UBERON:0003077,1.67e-09,72;UBERON:0007285,1.67e-09,72;UBERON:0000490,8.74e-09,148;UBERON:0001134,4.74e-08,62;UBERON:0002036,4.74e-08,62;UBERON:0003082,4.74e-08,62;UBERON:0003914,9.57e-08,117;UBERON:0002049,1.96e-07,78;UBERON:0007798,1.96e-07,78;UBERON:0002100,2.99e-07,199;UBERON:0002385,4.28e-07,64;UBERON:0001015,4.28e-07,64;UBERON:0000383,4.28e-07,64;UBERON:0004872,4.57e-07,83;UBERON:0001637,6.85e-07,42;UBERON:0003509,6.85e-07,42;UBERON:0004572,6.85e-07,42;UBERON:0007500,8.00e-07,59;UBERON:0001981,8.00e-07,59;UBERON:0004537,8.00e-07,59;UBERON:0006965,8.00e-07,59;UBERON:0003104,8.07e-07,160;UBERON:0009142,8.07e-07,160|phase1_expression=185.493625235238,178.131635877298,124.744647624934,487.356962979745,998.064123856134,655.126231599377,1593.25623367867,821.867555328307,875.233040097659,465.174341797356,1650.99756342276,673.017867533061,552.59181938861,473.158767366258,1306.69985249517,647.44911603306,554.478965782059,671.154973065996,382.051381452967,483.496395067546,1029.18348732726,597.758153858714,349.207904299889,259.240161088043,290.129040103589,148.318420556773,141.295114443357,131.604426356472,99.1277977659238,92.5028849414283,190.269015555457,807.251835092498,797.894478843585,857.089795566614,405.075991834397,278.651695675346,414.270219901469,116.893031200226,114.109790610511,143.010163801746,86.6552885308507,64.4548395377769,36.3181550364203,66.7377915998202,176.468065702674,127.114048062416,88.5554630610658,167.756498312905,164.144376574405,87.4584872659337,120.907853481736,183.746692623431,93.4260794796236,206.555098746824,262.727383993023,79.8147519660644,179.84515288812,214.386204160611,112.02670460775,158.53893937559,190.522463488114,79.4941633449986,109.505548034276,128.293649910341,106.216581338062,198.017443417208,153.837095501907,85.4245461872927,177.304192262868,165.497899665299,75.6749378291711,209.181697240937,206.966401386338,224.353114063282,134.791126177838,166.888281824667,98.7368667777692,108.878247310092,42.9137316481204,114.860135727723,94.883255023966,97.1773298027853,197.115793796681,186.779405051649,219.708785704298,214.218571728387,190.588489829142,198.289591784297,216.16167340065,245.191814915589,399.018291345723,450.41092424751,414.001906059623,371.401433307063,334.063103536995,513.335581226625,196.906479883947,288.862910620636,288.458903096311,279.703006788604,288.441205970727,243.352172147653,268.860885202918,241.426460070171,304.917114236456,231.724453734468,129.715050743442,106.700069331487,104.957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120520311,349.581854643763,253.568100040503,285.489457094715,192.68743735741,164.375776214683,259.498036682052,254.885251861825,319.719260556282,206.213670345883,186.012910568366,417.912573207459,399.048144187614,61.830600132039,145.042732296699,123.947239814707,721.64921728381,489.684799106508,444.523150701761,390.355043687816,397.039960677658,403.603491439391,547.552271798032,461.865427502533,682.722781440767,459.354496135705,472.509360276174,426.261041696299,195.685811778234,19.0796641889388,83.4002121832583,52.2158822431517,130.198053827652,187.720443388994,133.208916544516,420.511125483668,456.77121213266,139.552782439936,572.614807372212,186.145232769922,625.407913005503,429.150329683256,266.249067294112,198.108381149356,97.0423302570136,590.533611668891,651.217072538979,584.558833161663,320.137829673134,346.52439686817,309.489284557177,303.058146172708,192.343796058057,164.117003398521,344.917072929489,180.991077115741,21.0671858316387,28.339315265117,20.9120355364868,36.3055964706136,170.14839494966,25.8648124216175,35.8475933302709,49.969297090704,326.243016297409,307.075189874168,155.914308743427,972.148480655096,278.408929691032,185.016460184107,296.385170953249,139.816000401269,274.924008642898,525.958929559871,283.383043428899,137.240866873461,176.096598684501,18.3702230162033,32.0242020431677,15.2948229410876,20.419890882438,107.207062567571,288.383585366878,125.045216954102,664.969174923726,181.294884820586,35.3563211679669,20.1770233331294,50.9851107558771,27.547125153507,89.7667986045905,459.668376360003,156.740040625801,17.6721305739762,19.1398771067891,198.092877321531,158.727210499983,117.268680718668,20.5821422789963,207.401400852204,107.75272902012,198.005601147476,171.990607639338,44.101027756997,273.047521074152,228.995607975207,199.937013147966,341.529041375088,482.606446335713,536.568173506285,250.927257238515,254.264369062784,211.34095330479,219.680157469109,74.9395078837944,128.070739516124,276.704096012573,183.463476283667,286.909182561337,146.636449021173,346.246906949645,126.896052088827,151.632965726677,578.747401237761,159.313205723398,179.197629011973,133.694920908439,345.581783799614,274.007195026517,515.181261469081,214.971089238943,81.1100401714498,182.497233020804,208.350562288155,95.6078454840231,159.081669293598,20.8086975141842,23.1696192255127,73.964752327095,178.423470422208,86.9351241313646,101.972378774199,276.237354976504,163.376853824177,291.491164037161,329.150086158968,154.100977920015,166.518729875848,26.9478416324728,225.140019249674,23.2530896452928,86.3974366873947,287.261574399862,291.272099224566,562.929915673067,449.498998046617,367.018129845245,173.404462706385,320.293810556913,264.049080201991,506.644200383503,307.84791344173,187.779946929989,60.471401178155,126.747033563872,35.6542858967275,23.2724240689264,173.572461267398,145.219303192882,108.057246155638,98.2021980160472,286.94543634379,125.957726232488,71.3473677022514,248.850242846227,168.721017435044,111.467647739142,116.118250530743,133.064142618405,184.052790329413,268.205820190699,129.35842913225,422.627575911491,164.248659682418,165.392673979418,220.944624825446,181.751599352645,140.891655513718,1123.27199703053|short_description=p1@RPLP0}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6175 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10371 | |||
|TSSclassifier=S | |||
|UniProt=Q3B7A4,F8VWS0,F8VPE8,F8VYN4 | |||
|association_with_transcript=0bp_to_ENST00000313104,ENST00000546989,ENST00000547191,ENST00000548495,ENST00000548551,ENST00000549098,ENST00000549242,ENST00000552461_5end | |||
|description=CAGE_peak_1_at_RPLP0_5end | |||
|id=chr12:120638905..120638915,- | |||
|ontology_enrichment_celltype=CL:0000012!2.34e-39!682;CL:0000548!8.90e-38!679;CL:0000004!8.90e-38!679;CL:0000255!8.90e-38!679;CL:0000144!1.40e-29!625;CL:0000003!4.32e-28!722;CL:0002371!6.71e-23!591;CL:0002321!3.61e-14!248;CL:0000063!4.21e-14!578;CL:0000220!7.14e-14!246;CL:0000055!2.50e-13!180;CL:0000222!3.53e-12!119;CL:0000183!3.38e-11!59;CL:0000187!3.08e-09!54;CL:0000393!3.59e-09!60;CL:0000211!3.59e-09!60;CL:0000066!3.78e-09!254;CL:0000680!1.29e-08!57;CL:0000056!1.29e-08!57;CL:0000355!1.29e-08!57;CL:0000192!9.39e-08!42;CL:0000514!9.39e-08!42;CL:0000034!6.52e-07!444 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.53e-15,250;CL:0000222,7.30e-13,121;CL:0000187,1.19e-09,55;CL:0000393,1.43e-09,61;CL:0000211,1.43e-09,61;CL:0000680,5.20e-09,58;CL:0000056,5.20e-09,58;CL:0000355,5.20e-09,58;CL:0000066,6.96e-09,253;CL:0000192,3.62e-08,43;CL:0000514,3.62e-08,43;CL:0000034,3.50e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p1@RPLP0 | |||
}} |
Revision as of 21:15, 10 September 2013
Short description: | p1@RPLP0 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RPLP0_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000313104, ENST00000546989, ENST00000547191, ENST00000548495, ENST00000548551, ENST00000549098, ENST00000549242, ENST00000552461_5end |
EntrezGene: | RPLP0 |
HGNC: | 10371 |
UniProt: | Q3B7A4F8VWS0F8VPE8F8VYN4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.53e-15 | 250 |
mesodermal cell | 7.30e-13 | 121 |
muscle cell | 1.19e-09 | 55 |
electrically responsive cell | 1.43e-09 | 61 |
electrically active cell | 1.43e-09 | 61 |
muscle precursor cell | 5.20e-09 | 58 |
myoblast | 5.20e-09 | 58 |
multi-potent skeletal muscle stem cell | 5.20e-09 | 58 |
epithelial cell | 6.96e-09 | 253 |
smooth muscle cell | 3.62e-08 | 43 |
smooth muscle myoblast | 3.62e-08 | 43 |
stem cell | 3.50e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.87e-12 | 78 |
multilaminar epithelium | 2.04e-10 | 83 |
somite | 3.99e-10 | 71 |
presomitic mesoderm | 3.99e-10 | 71 |
presumptive segmental plate | 3.99e-10 | 71 |
dermomyotome | 3.99e-10 | 71 |
trunk paraxial mesoderm | 3.99e-10 | 71 |
dense mesenchyme tissue | 1.25e-09 | 73 |
paraxial mesoderm | 1.67e-09 | 72 |
presumptive paraxial mesoderm | 1.67e-09 | 72 |
unilaminar epithelium | 8.74e-09 | 148 |
skeletal muscle tissue | 4.74e-08 | 62 |
striated muscle tissue | 4.74e-08 | 62 |
myotome | 4.74e-08 | 62 |
epithelial tube | 9.57e-08 | 117 |
vasculature | 1.96e-07 | 78 |
vascular system | 1.96e-07 | 78 |
trunk | 2.99e-07 | 199 |
muscle tissue | 4.28e-07 | 64 |
musculature | 4.28e-07 | 64 |
musculature of body | 4.28e-07 | 64 |
splanchnic layer of lateral plate mesoderm | 4.57e-07 | 83 |
artery | 6.85e-07 | 42 |
arterial blood vessel | 6.85e-07 | 42 |
arterial system | 6.85e-07 | 42 |
epithelial tube open at both ends | 8.00e-07 | 59 |
blood vessel | 8.00e-07 | 59 |
blood vasculature | 8.00e-07 | 59 |
vascular cord | 8.00e-07 | 59 |
mesenchyme | 8.07e-07 | 160 |
entire embryonic mesenchyme | 8.07e-07 | 160 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.