FFCP PHASE1:Hg19::chr18:63418068..63418080,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1005|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1766|TSSclassifier=S|UniProt=Q9ULB5,Q8IY78|association_with_transcript=-76bp_to_ENST00000397966,ENST00000397968,NM_004361,uc002lka.2,uc002lkb.2_5end|description=CAGE_peak_6_at_CDH7_5end|id=chr18:63418068..63418080,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;1.84e-98;3!UBERON:0006241;2.45e-12;3!UBERON:0003057;2.45e-12;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.09e-29!94;UBERON:0001016!8.09e-29!94;UBERON:0005743!4.41e-26!86;UBERON:0001017!1.62e-25!82;UBERON:0002346!6.73e-25!90;UBERON:0001049!1.20e-23!57;UBERON:0005068!1.20e-23!57;UBERON:0006241!1.20e-23!57;UBERON:0007135!1.20e-23!57;UBERON:0003075!2.17e-22!86;UBERON:0007284!2.17e-22!86;UBERON:0007023!6.78e-21!115;UBERON:0000955!3.63e-20!69;UBERON:0006238!3.63e-20!69;UBERON:0003076!1.88e-18!15;UBERON:0003057!1.88e-18!15;UBERON:0002616!3.65e-18!59;UBERON:0000924!3.95e-18!173;UBERON:0006601!3.95e-18!173;UBERON:0004121!3.02e-16!169;UBERON:0004733!3.32e-14!12;UBERON:0002028!3.32e-14!12;UBERON:0007277!3.32e-14!12;UBERON:0000200!9.37e-14!6;UBERON:0002020!1.66e-13!34;UBERON:0003528!1.66e-13!34;UBERON:0001893!1.99e-13!34;UBERON:0004732!5.01e-13!13;UBERON:0001869!3.78e-12!32;UBERON:0002791!1.01e-11!33;UBERON:0000153!2.31e-11!129;UBERON:0007811!2.31e-11!129;UBERON:0001950!2.57e-11!20;UBERON:0000033!3.92e-11!123;UBERON:0002298!6.37e-11!8;UBERON:0002780!1.03e-10!41;UBERON:0001890!1.03e-10!41;UBERON:0006240!1.03e-10!41;UBERON:0002771!1.73e-10!3;UBERON:0002680!1.84e-10!9;UBERON:0001895!1.84e-10!9;UBERON:0010092!1.84e-10!9;UBERON:0003080!2.13e-10!42;UBERON:0002619!3.43e-10!22;UBERON:0000956!7.85e-09!25;UBERON:0000203!7.85e-09!25;UBERON:0003056!7.92e-09!61;UBERON:0001875!5.21e-08!2;UBERON:0006514!5.21e-08!2;UBERON:0000064!1.45e-07!219;UBERON:0002360!1.86e-07!2;UBERON:0000094!1.86e-07!2;UBERON:0007645!1.86e-07!2;UBERON:0000475!4.67e-07!365|ontology_enrichment_uberon_v019=UBERON:0002037;8.16e-50;6!UBERON:0002680;1.46e-33;9!UBERON:0001895;1.46e-33;9!UBERON:0004733;2.05e-25;12!UBERON:0002028;2.05e-25;12!UBERON:0004732;1.56e-23;13!UBERON:0002240;2.45e-12;3!UBERON:0002369;2.45e-12;3!UBERON:0001235;2.45e-12;3!UBERON:0005174;2.45e-12;3!UBERON:0006858;2.45e-12;3!UBERON:0001137;2.45e-12;3|ontology_enrichment_uberon_v019_2=UBERON:0002037,7.51e-50,6;UBERON:0006215,7.51e-50,6;UBERON:0003076,1.63e-35,15;UBERON:0003057,1.63e-35,15;UBERON:0002680,1.39e-33,9;UBERON:0001895,1.39e-33,9;UBERON:0010092,1.39e-33,9;UBERON:0004733,1.96e-25,12;UBERON:0002028,1.96e-25,12;UBERON:0007277,1.96e-25,12;UBERON:0004732,1.50e-23,13;UBERON:0002369,2.07e-12,3;UBERON:0001235,2.07e-12,3;UBERON:0006858,2.07e-12,3;UBERON:0002240,2.89e-12,3;UBERON:0005174,2.89e-12,3;UBERON:0001137,2.89e-12,3;UBERON:0001049,7.87e-10,56;UBERON:0005068,7.87e-10,56;UBERON:0006241,7.87e-10,56;UBERON:0007135,7.87e-10,56;UBERON:0001017,6.64e-07,81;UBERON:0003075,6.64e-07,82;UBERON:0007284,6.64e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6699314784893,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511343412510774,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,3.42795705786796,2.65992857058193,0.219385397153973,0,0,0.0769502585037971,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472091293214983,0,0.717149357331379,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.646414781807753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.310482014706917,0,0,0.303298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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1005 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1766 | |||
|TSSclassifier=S | |||
|UniProt=Q9ULB5,Q8IY78 | |||
|association_with_transcript=-76bp_to_ENST00000397966,ENST00000397968,NM_004361,uc002lka.2,uc002lkb.2_5end | |||
|description=CAGE_peak_6_at_CDH7_5end | |||
|id=chr18:63418068..63418080,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.84e-98;3!UBERON:0006241;2.45e-12;3!UBERON:0003057;2.45e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.09e-29!94;UBERON:0001016!8.09e-29!94;UBERON:0005743!4.41e-26!86;UBERON:0001017!1.62e-25!82;UBERON:0002346!6.73e-25!90;UBERON:0001049!1.20e-23!57;UBERON:0005068!1.20e-23!57;UBERON:0006241!1.20e-23!57;UBERON:0007135!1.20e-23!57;UBERON:0003075!2.17e-22!86;UBERON:0007284!2.17e-22!86;UBERON:0007023!6.78e-21!115;UBERON:0000955!3.63e-20!69;UBERON:0006238!3.63e-20!69;UBERON:0003076!1.88e-18!15;UBERON:0003057!1.88e-18!15;UBERON:0002616!3.65e-18!59;UBERON:0000924!3.95e-18!173;UBERON:0006601!3.95e-18!173;UBERON:0004121!3.02e-16!169;UBERON:0004733!3.32e-14!12;UBERON:0002028!3.32e-14!12;UBERON:0007277!3.32e-14!12;UBERON:0000200!9.37e-14!6;UBERON:0002020!1.66e-13!34;UBERON:0003528!1.66e-13!34;UBERON:0001893!1.99e-13!34;UBERON:0004732!5.01e-13!13;UBERON:0001869!3.78e-12!32;UBERON:0002791!1.01e-11!33;UBERON:0000153!2.31e-11!129;UBERON:0007811!2.31e-11!129;UBERON:0001950!2.57e-11!20;UBERON:0000033!3.92e-11!123;UBERON:0002298!6.37e-11!8;UBERON:0002780!1.03e-10!41;UBERON:0001890!1.03e-10!41;UBERON:0006240!1.03e-10!41;UBERON:0002771!1.73e-10!3;UBERON:0002680!1.84e-10!9;UBERON:0001895!1.84e-10!9;UBERON:0010092!1.84e-10!9;UBERON:0003080!2.13e-10!42;UBERON:0002619!3.43e-10!22;UBERON:0000956!7.85e-09!25;UBERON:0000203!7.85e-09!25;UBERON:0003056!7.92e-09!61;UBERON:0001875!5.21e-08!2;UBERON:0006514!5.21e-08!2;UBERON:0000064!1.45e-07!219;UBERON:0002360!1.86e-07!2;UBERON:0000094!1.86e-07!2;UBERON:0007645!1.86e-07!2;UBERON:0000475!4.67e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;8.16e-50;6!UBERON:0002680;1.46e-33;9!UBERON:0001895;1.46e-33;9!UBERON:0004733;2.05e-25;12!UBERON:0002028;2.05e-25;12!UBERON:0004732;1.56e-23;13!UBERON:0002240;2.45e-12;3!UBERON:0002369;2.45e-12;3!UBERON:0001235;2.45e-12;3!UBERON:0005174;2.45e-12;3!UBERON:0006858;2.45e-12;3!UBERON:0001137;2.45e-12;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,7.51e-50,6;UBERON:0006215,7.51e-50,6;UBERON:0003076,1.63e-35,15;UBERON:0003057,1.63e-35,15;UBERON:0002680,1.39e-33,9;UBERON:0001895,1.39e-33,9;UBERON:0010092,1.39e-33,9;UBERON:0004733,1.96e-25,12;UBERON:0002028,1.96e-25,12;UBERON:0007277,1.96e-25,12;UBERON:0004732,1.50e-23,13;UBERON:0002369,2.07e-12,3;UBERON:0001235,2.07e-12,3;UBERON:0006858,2.07e-12,3;UBERON:0002240,2.89e-12,3;UBERON:0005174,2.89e-12,3;UBERON:0001137,2.89e-12,3;UBERON:0001049,7.87e-10,56;UBERON:0005068,7.87e-10,56;UBERON:0006241,7.87e-10,56;UBERON:0007135,7.87e-10,56;UBERON:0001017,6.64e-07,81;UBERON:0003075,6.64e-07,82;UBERON:0007284,6.64e-07,82 | |||
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|short_description=p6@CDH7 | |||
}} |
Revision as of 18:03, 11 September 2013
Short description: | p6@CDH7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_CDH7_5end |
Coexpression cluster: | NA |
Association with transcript: | -76bp_to_ENST00000397966, ENST00000397968, NM_004361, uc002lka.2, uc002lkb.2_5end |
EntrezGene: | CDH7 |
HGNC: | 1766 |
UniProt: | Q9ULB5Q8IY78 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 7.51e-50 | 6 |
rhombic lip | 7.51e-50 | 6 |
posterior neural tube | 1.63e-35 | 15 |
chordal neural plate | 1.63e-35 | 15 |
regional part of metencephalon | 1.39e-33 | 9 |
metencephalon | 1.39e-33 | 9 |
future metencephalon | 1.39e-33 | 9 |
segmental subdivision of hindbrain | 1.96e-25 | 12 |
hindbrain | 1.96e-25 | 12 |
presumptive hindbrain | 1.96e-25 | 12 |
segmental subdivision of nervous system | 1.50e-23 | 13 |
adrenal gland | 2.07e-12 | 3 |
adrenal cortex | 2.07e-12 | 3 |
adrenal/interrenal gland | 2.07e-12 | 3 |
spinal cord | 2.89e-12 | 3 |
dorsal region element | 2.89e-12 | 3 |
dorsum | 2.89e-12 | 3 |
neural tube | 7.87e-10 | 56 |
neural rod | 7.87e-10 | 56 |
future spinal cord | 7.87e-10 | 56 |
neural keel | 7.87e-10 | 56 |
central nervous system | 6.64e-07 | 81 |
neural plate | 6.64e-07 | 82 |
presumptive neural plate | 6.64e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.