FFCP PHASE1:Hg19::chr3:111852061..111852127,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=257144|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20253|TSSclassifier=S|UniProt=C9JD17,F2Z3F7,C9JUG6,C9IY73,C9JY41,Q8N6F7|association_with_transcript=0bp_to_ENST00000460387,ENST00000470085,ENST00000484193,ENST00000487901,ENST00000488580,uc003dys.1,uc003dyt.1_5end|coexpression_cluster_id=C4267|description=CAGE_peak_1_at_GCET2_5end|id=chr3:111852061..111852127,-|ontology_enrichment_celltype=CL:0000037!6.35e-38!172;CL:0000566!6.35e-38!172;CL:0000542!9.56e-37!53;CL:0000051!9.56e-37!53;CL:0000988!4.75e-36!182;CL:0000838!8.04e-36!52;CL:0000738!3.42e-35!140;CL:0002032!1.46e-33!165;CL:0000837!1.46e-33!165;CL:0002031!2.71e-29!124;CL:0002087!2.46e-28!119;CL:0000945!9.57e-22!24;CL:0000826!9.57e-22!24;CL:0000084!1.37e-13!25;CL:0000827!1.37e-13!25;CL:0000236!3.70e-13!14;CL:0000791!3.78e-13!18;CL:0000789!3.78e-13!18;CL:0002420!3.78e-13!18;CL:0002419!3.78e-13!18;CL:0000790!3.78e-13!18;CL:0000625!3.93e-10!11;CL:0000451!3.14e-08!10;CL:0000763!1.74e-07!112;CL:0000049!1.74e-07!112;CL:0000990!3.77e-07!8|ontology_enrichment_celltype_v019=CL:0000945;1.11e-30;24!CL:0000542;4.33e-29;53!CL:0000084;8.87e-19;25!CL:0000791;1.38e-18;18!CL:0000789;1.38e-18;18!CL:0002419;1.38e-18;18!CL:0000236;6.37e-17;13!CL:0000625;6.35e-14;11!CL:0002087;7.60e-10;104!CL:0000451;1.88e-09;10!CL:0000990;6.72e-08;8!CL:0000624;9.78e-08;6!CL:0000738;1.48e-07;136!CL:0000453;2.59e-07;5|ontology_enrichment_celltype_v019_2=CL:0000542,4.10e-52,53;CL:0000051,4.10e-52,53;CL:0000838,8.91e-51,52;CL:0000037,3.50e-40,168;CL:0000738,9.52e-40,136;CL:0000988,1.02e-38,177;CL:0002032,1.38e-34,161;CL:0000837,1.38e-34,161;CL:0002087,1.97e-31,115;CL:0002031,2.79e-31,120;CL:0000945,1.16e-30,24;CL:0000826,1.16e-30,24;CL:0000084,1.11e-18,25;CL:0000827,1.11e-18,25;CL:0000791,1.44e-18,18;CL:0000789,1.44e-18,18;CL:0002420,1.44e-18,18;CL:0002419,1.44e-18,18;CL:0000790,1.44e-18,18;CL:0000236,2.92e-18,14;CL:0000625,6.67e-14,11;CL:0000451,1.51e-09,10;CL:0000990,5.44e-08,8;CL:0000624,9.77e-08,6;CL:0000453,2.62e-07,5|ontology_enrichment_development_v019=CL:0000051;4.33e-29;53!CL:0000790;1.38e-18;18|ontology_enrichment_disease=DOID:2531!6.64e-08!51;DOID:0060083!6.64e-08!51;DOID:0060058!4.52e-07!10|ontology_enrichment_disease_v019=DOID:0060058;1.02e-08;10|ontology_enrichment_disease_v019_2=DOID:0060058,1.02e-08,10;DOID:2531,4.06e-08,51;DOID:0060083,4.06e-08,51|ontology_enrichment_uberon=UBERON:0002390!1.14e-11!102;UBERON:0003061!1.14e-11!102;UBERON:0000178!3.30e-11!15;UBERON:0000179!3.30e-11!15;UBERON:0000463!3.30e-11!15;UBERON:0002193!2.59e-10!112;UBERON:0007023!1.84e-07!115|ontology_enrichment_uberon_v019=UBERON:0000178;1.04e-13;15!UBERON:0000179;1.04e-13;15!UBERON:0000463;1.04e-13;15!UBERON:0002390;2.23e-12;32!UBERON:0002193;2.12e-07;42!UBERON:0004177;2.35e-07;5!UBERON:0005057;2.35e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.66e-14,15;UBERON:0000179,8.66e-14,15;UBERON:0000463,8.66e-14,15;UBERON:0002390,3.25e-10,98;UBERON:0003061,3.25e-10,98;UBERON:0002193,1.32e-09,108;UBERON:0004177,4.87e-07,7;UBERON:0005057,4.87e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,123.560477094437,98.8491096977347,104.60662836588,3.93364276848904,1.53531759238885,0.77408061658038,0.919421224478927,1.204823675113,0.369754010166788,328.69333206222,265.003449356554,7.92721186204087,4.9859586767869,3.40925560699241,6.51032612147556,2.91090116511902,5.50619232232265,1.54545340580512,0,0.755751887377619,0,0,0,0,0,0,0.236482229888585,0,0,2.70852973188684,0,0,0,0,0.641858054152187,0,0.659702600373432,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0.75374599577023,0,0.217188844705117,1.21079900526674,1.10483290796269,0.632924774881769,0.422510572623884,0,0.419317291016752,0.112328631146495,0,0.32145117339416,0,0.19891667719909,0,58.0787606722365,56.2522769599995,64.044666278176,58.888770714178,58.0574181202218,50.00346227604,67.4265770240559,44.8405264631621,23.9069447025968,12.3319809767897,15.6732023531344,1.32171328579026,2.80254281490768,8.69167479757754,32.4571120687825,25.5456995786957,21.1769543969494,2.17342444007882,10.7554347989085,8.99550830895993,17.534405556712,2.33961959458865,7.07054177939609,8.63982188876122,7.85331204918545,1.28091319725675,1.04047478047903,4.93313713811028,1.65810010671509,4.63684937176084,37.9613601694875,36.385552620201,34.4967228556423,5.55215779218074,29.8911985009499,28.5210779750583,41.242209799179,55.7489475067169,47.5290921315186,46.5721501779703,47.2805873904206,61.3055867429664,68.7118996037902,58.7207585069162,41.0563998460523,7.05623601286563,6.68600489458768,9.26876184849914,0,0,0,0.361439152384566,0,0,0,0,0,0,0.263504357079378,0.523916301990851,0.364295288292542,1.85392221392215,0.97364218096405,1.56716763569341,1.72845348674525,4.5313218618015,5.14795419702115,2.60020250930695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.96630426581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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=257144 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20253 | |||
|TSSclassifier=S | |||
|UniProt=C9JD17,F2Z3F7,C9JUG6,C9IY73,C9JY41,Q8N6F7 | |||
|association_with_transcript=0bp_to_ENST00000460387,ENST00000470085,ENST00000484193,ENST00000487901,ENST00000488580,uc003dys.1,uc003dyt.1_5end | |||
|coexpression_cluster_id=C4267 | |||
|description=CAGE_peak_1_at_GCET2_5end | |||
|id=chr3:111852061..111852127,- | |||
|ontology_enrichment_celltype=CL:0000037!6.35e-38!172;CL:0000566!6.35e-38!172;CL:0000542!9.56e-37!53;CL:0000051!9.56e-37!53;CL:0000988!4.75e-36!182;CL:0000838!8.04e-36!52;CL:0000738!3.42e-35!140;CL:0002032!1.46e-33!165;CL:0000837!1.46e-33!165;CL:0002031!2.71e-29!124;CL:0002087!2.46e-28!119;CL:0000945!9.57e-22!24;CL:0000826!9.57e-22!24;CL:0000084!1.37e-13!25;CL:0000827!1.37e-13!25;CL:0000236!3.70e-13!14;CL:0000791!3.78e-13!18;CL:0000789!3.78e-13!18;CL:0002420!3.78e-13!18;CL:0002419!3.78e-13!18;CL:0000790!3.78e-13!18;CL:0000625!3.93e-10!11;CL:0000451!3.14e-08!10;CL:0000763!1.74e-07!112;CL:0000049!1.74e-07!112;CL:0000990!3.77e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.11e-30;24!CL:0000542;4.33e-29;53!CL:0000084;8.87e-19;25!CL:0000791;1.38e-18;18!CL:0000789;1.38e-18;18!CL:0002419;1.38e-18;18!CL:0000236;6.37e-17;13!CL:0000625;6.35e-14;11!CL:0002087;7.60e-10;104!CL:0000451;1.88e-09;10!CL:0000990;6.72e-08;8!CL:0000624;9.78e-08;6!CL:0000738;1.48e-07;136!CL:0000453;2.59e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.10e-52,53;CL:0000051,4.10e-52,53;CL:0000838,8.91e-51,52;CL:0000037,3.50e-40,168;CL:0000738,9.52e-40,136;CL:0000988,1.02e-38,177;CL:0002032,1.38e-34,161;CL:0000837,1.38e-34,161;CL:0002087,1.97e-31,115;CL:0002031,2.79e-31,120;CL:0000945,1.16e-30,24;CL:0000826,1.16e-30,24;CL:0000084,1.11e-18,25;CL:0000827,1.11e-18,25;CL:0000791,1.44e-18,18;CL:0000789,1.44e-18,18;CL:0002420,1.44e-18,18;CL:0002419,1.44e-18,18;CL:0000790,1.44e-18,18;CL:0000236,2.92e-18,14;CL:0000625,6.67e-14,11;CL:0000451,1.51e-09,10;CL:0000990,5.44e-08,8;CL:0000624,9.77e-08,6;CL:0000453,2.62e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000051;4.33e-29;53!CL:0000790;1.38e-18;18 | |||
|ontology_enrichment_disease=DOID:2531!6.64e-08!51;DOID:0060083!6.64e-08!51;DOID:0060058!4.52e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.02e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.02e-08,10;DOID:2531,4.06e-08,51;DOID:0060083,4.06e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.14e-11!102;UBERON:0003061!1.14e-11!102;UBERON:0000178!3.30e-11!15;UBERON:0000179!3.30e-11!15;UBERON:0000463!3.30e-11!15;UBERON:0002193!2.59e-10!112;UBERON:0007023!1.84e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.04e-13;15!UBERON:0000179;1.04e-13;15!UBERON:0000463;1.04e-13;15!UBERON:0002390;2.23e-12;32!UBERON:0002193;2.12e-07;42!UBERON:0004177;2.35e-07;5!UBERON:0005057;2.35e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.66e-14,15;UBERON:0000179,8.66e-14,15;UBERON:0000463,8.66e-14,15;UBERON:0002390,3.25e-10,98;UBERON:0003061,3.25e-10,98;UBERON:0002193,1.32e-09,108;UBERON:0004177,4.87e-07,7;UBERON:0005057,4.87e-07,7 | |||
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| |||
|short_description=p1@GCET2 | |||
}} |
Revision as of 20:45, 12 September 2013
Short description: | p1@GCET2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GCET2_5end |
Coexpression cluster: | C4267_splenic_plasma_Burkitt_diffuse_xeroderma_b_migratory |
Association with transcript: | 0bp_to_ENST00000460387, ENST00000470085, ENST00000484193, ENST00000487901, ENST00000488580, uc003dys.1, uc003dyt.1_5end |
EntrezGene: | GCET2 |
HGNC: | 20253 |
UniProt: | C9JD17F2Z3F7C9JUG6C9IY73C9JY41Q8N6F7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.10e-52 | 53 |
common lymphoid progenitor | 4.10e-52 | 53 |
lymphoid lineage restricted progenitor cell | 8.91e-51 | 52 |
hematopoietic stem cell | 3.50e-40 | 168 |
leukocyte | 9.52e-40 | 136 |
hematopoietic cell | 1.02e-38 | 177 |
hematopoietic oligopotent progenitor cell | 1.38e-34 | 161 |
hematopoietic multipotent progenitor cell | 1.38e-34 | 161 |
nongranular leukocyte | 1.97e-31 | 115 |
hematopoietic lineage restricted progenitor cell | 2.79e-31 | 120 |
lymphocyte of B lineage | 1.16e-30 | 24 |
pro-B cell | 1.16e-30 | 24 |
T cell | 1.11e-18 | 25 |
pro-T cell | 1.11e-18 | 25 |
mature alpha-beta T cell | 1.44e-18 | 18 |
alpha-beta T cell | 1.44e-18 | 18 |
immature T cell | 1.44e-18 | 18 |
mature T cell | 1.44e-18 | 18 |
immature alpha-beta T cell | 1.44e-18 | 18 |
B cell | 2.92e-18 | 14 |
CD8-positive, alpha-beta T cell | 6.67e-14 | 11 |
dendritic cell | 1.51e-09 | 10 |
conventional dendritic cell | 5.44e-08 | 8 |
CD4-positive, alpha-beta T cell | 9.77e-08 | 6 |
Langerhans cell | 2.62e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
blood | 8.66e-14 | 15 |
haemolymphatic fluid | 8.66e-14 | 15 |
organism substance | 8.66e-14 | 15 |
hematopoietic system | 3.25e-10 | 98 |
blood island | 3.25e-10 | 98 |
hemolymphoid system | 1.32e-09 | 108 |
hemopoietic organ | 4.87e-07 | 7 |
immune organ | 4.87e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.02e-08 | 10 |
hematologic cancer | 4.06e-08 | 51 |
immune system cancer | 4.06e-08 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.