FFCP PHASE1:Hg19::chr4:129732545..129732557,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79960|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30027|TSSclassifier=S|UniProt=|association_with_transcript=64bp_to_ENST00000413543,uc003igm.2_5end|description=CAGE_peak_10_at_PHF17_5end|id=chr4:129732545..129732557,+|ontology_enrichment_celltype=CL:0000542!1.52e-20!53;CL:0000051!1.52e-20!53;CL:0000838!5.35e-20!52;CL:0000945!2.22e-12!24;CL:0000826!2.22e-12!24;CL:0000037!2.44e-11!172;CL:0000566!2.44e-11!172;CL:0000236!2.72e-10!14;CL:0000988!4.34e-10!182;CL:0000738!1.20e-09!140;CL:0002032!6.76e-09!165;CL:0000837!6.76e-09!165;CL:0002087!3.57e-08!119;CL:0000791!2.35e-07!18;CL:0000789!2.35e-07!18;CL:0002420!2.35e-07!18;CL:0002419!2.35e-07!18;CL:0000790!2.35e-07!18;CL:0000084!2.73e-07!25;CL:0000827!2.73e-07!25;CL:0002031!4.65e-07!124|ontology_enrichment_celltype_v019=CL:0000542;1.33e-16;53!CL:0002322;1.59e-14;5!CL:0000236;1.18e-13;13!CL:0000624;1.11e-12;6!CL:0000791;2.01e-12;18!CL:0000789;2.01e-12;18!CL:0002419;2.01e-12;18!CL:0000945;1.56e-10;24!CL:0000084;2.10e-10;25!CL:0000784;5.84e-10;3!CL:0000623;2.15e-09;3!CL:0000771;2.53e-07;2|ontology_enrichment_celltype_v019_2=CL:0000838,3.25e-25,52;CL:0000542,1.28e-24,53;CL:0000051,1.28e-24,53;CL:0000738,6.53e-17,136;CL:0000037,4.40e-15,168;CL:0002322,6.44e-15,5;CL:0000988,7.47e-14,177;CL:0000624,3.45e-13,6;CL:0000236,7.14e-13,14;CL:0000791,8.80e-13,18;CL:0000789,8.80e-13,18;CL:0002420,8.80e-13,18;CL:0002419,8.80e-13,18;CL:0000790,8.80e-13,18;CL:0002087,5.67e-12,115;CL:0002032,7.69e-12,161;CL:0000837,7.69e-12,161;CL:0002031,3.12e-11,120;CL:0000945,1.34e-10,24;CL:0000826,1.34e-10,24;CL:0000084,1.41e-10,25;CL:0000827,1.41e-10,25;CL:0000784,6.11e-10,3;CL:0000623,6.29e-10,3;CL:0000825,6.29e-10,3;CL:0000771,2.55e-07,2|ontology_enrichment_development_v019=CL:0000051;1.33e-16;53!CL:0000790;2.01e-12;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002370;3.40e-07;2!UBERON:0005058;3.40e-07;2!UBERON:0009113;3.40e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.69e-07,4;UBERON:0005058,1.69e-07,4;UBERON:0009113,1.69e-07,4;UBERON:0003295,1.69e-07,4;UBERON:0005562,1.69e-07,4|phase1_expression=0,0,0.422863212287913,0,0.446961094427288,1.74467704820074,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0.273748850145768,0.251085279189606,0.382067028739756,0.164201178899891,0.629686250509434,0,0.383829398097213,0.309632246632152,0,0,0,0.852139206383318,1.13735385989937,0.587200878669695,1.10799081706375,0.200544447470142,0.651032612147555,0,0,0.257575567634187,0.145398238779565,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0.56738522469114,0.622822248995575,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0.182664153764634,1.75996244461323,2.73069305631066,1.77901850772711,0.426730222566507,0.800791974072025,1.72425731986345,1.32208974556972,0.954053754535364,3.41527781465669,1.17447437874188,1.52909291250092,0,0,0.263384084775077,1.37696839079683,1.96505381374582,2.46721798799411,0.83593247695339,2.60737813306872,1.89379122293893,0,0.557052284425868,0.294605907474837,0.664601683750863,0.812411591295047,0.25618263945135,0.910415432919148,0.493313713811028,0,0.579606171470105,0.741432815810302,1.60524496853828,0,0.679856056185397,1.91610246800961,3.09264700934367,0.759059076058509,0.637130828648193,2.60433381542567,0,0.451725357233318,0.255973222308837,0,0.710331756132051,0,2.01606743224732,1.87208137048455,2.02754165435919,0,0,0,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.527008714158756,0,0,0,0,0,0.132957960518865,1.66943437013739,1.14398982156026,4.08603251462521,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0.450445921933289,0,0,0,1.31780417436063,3.87780264148325,0,0,0,1.05927344650575,0.286836620748814,0,1.68203280042692,0,0,0,0.404132016209064,0,0,0,0,0,0,0,0,0.485618833104395,0.280901613404497,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0.504867548488229,0.184099797284599,0,0,0,0,0,0,0,1.58565817968474,1.06023814657188,1.39432731443422,1.96956004529204,1.7662459561294,3.28479623168247,0,0.643240938192885,0,0,0,0,0.168584690078102,0.241011029883482,0,0.217879444092406,0.474541238222193,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,1.26755034821831,0,0,3.09024169590255,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0,0.858486162094873,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0.414656231081544,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0.710783897485092,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0.336255431980582,1.77327684181734,1.50939302401662,1.92514554419623,0,0,0,0,0.637938751653163,1.49801404789436,0,2.90090859405225,0,0,0,0.207970861530807,0,0.1577024150339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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79960 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30027 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=64bp_to_ENST00000413543,uc003igm.2_5end | |||
|description=CAGE_peak_10_at_PHF17_5end | |||
|id=chr4:129732545..129732557,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.52e-20!53;CL:0000051!1.52e-20!53;CL:0000838!5.35e-20!52;CL:0000945!2.22e-12!24;CL:0000826!2.22e-12!24;CL:0000037!2.44e-11!172;CL:0000566!2.44e-11!172;CL:0000236!2.72e-10!14;CL:0000988!4.34e-10!182;CL:0000738!1.20e-09!140;CL:0002032!6.76e-09!165;CL:0000837!6.76e-09!165;CL:0002087!3.57e-08!119;CL:0000791!2.35e-07!18;CL:0000789!2.35e-07!18;CL:0002420!2.35e-07!18;CL:0002419!2.35e-07!18;CL:0000790!2.35e-07!18;CL:0000084!2.73e-07!25;CL:0000827!2.73e-07!25;CL:0002031!4.65e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.33e-16;53!CL:0002322;1.59e-14;5!CL:0000236;1.18e-13;13!CL:0000624;1.11e-12;6!CL:0000791;2.01e-12;18!CL:0000789;2.01e-12;18!CL:0002419;2.01e-12;18!CL:0000945;1.56e-10;24!CL:0000084;2.10e-10;25!CL:0000784;5.84e-10;3!CL:0000623;2.15e-09;3!CL:0000771;2.53e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.25e-25,52;CL:0000542,1.28e-24,53;CL:0000051,1.28e-24,53;CL:0000738,6.53e-17,136;CL:0000037,4.40e-15,168;CL:0002322,6.44e-15,5;CL:0000988,7.47e-14,177;CL:0000624,3.45e-13,6;CL:0000236,7.14e-13,14;CL:0000791,8.80e-13,18;CL:0000789,8.80e-13,18;CL:0002420,8.80e-13,18;CL:0002419,8.80e-13,18;CL:0000790,8.80e-13,18;CL:0002087,5.67e-12,115;CL:0002032,7.69e-12,161;CL:0000837,7.69e-12,161;CL:0002031,3.12e-11,120;CL:0000945,1.34e-10,24;CL:0000826,1.34e-10,24;CL:0000084,1.41e-10,25;CL:0000827,1.41e-10,25;CL:0000784,6.11e-10,3;CL:0000623,6.29e-10,3;CL:0000825,6.29e-10,3;CL:0000771,2.55e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;1.33e-16;53!CL:0000790;2.01e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.40e-07;2!UBERON:0005058;3.40e-07;2!UBERON:0009113;3.40e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.69e-07,4;UBERON:0005058,1.69e-07,4;UBERON:0009113,1.69e-07,4;UBERON:0003295,1.69e-07,4;UBERON:0005562,1.69e-07,4 | |||
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| |||
|short_description=p10@PHF17 | |||
}} |
Revision as of 02:22, 13 September 2013
Short description: | p10@PHF17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_PHF17_5end |
Coexpression cluster: | NA |
Association with transcript: | 64bp_to_ENST00000413543, uc003igm.2_5end |
EntrezGene: | PHF17 |
HGNC: | 30027 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.25e-25 | 52 |
lymphocyte | 1.28e-24 | 53 |
common lymphoid progenitor | 1.28e-24 | 53 |
leukocyte | 6.53e-17 | 136 |
hematopoietic stem cell | 4.40e-15 | 168 |
embryonic stem cell | 6.44e-15 | 5 |
hematopoietic cell | 7.47e-14 | 177 |
CD4-positive, alpha-beta T cell | 3.45e-13 | 6 |
B cell | 7.14e-13 | 14 |
mature alpha-beta T cell | 8.80e-13 | 18 |
alpha-beta T cell | 8.80e-13 | 18 |
immature T cell | 8.80e-13 | 18 |
mature T cell | 8.80e-13 | 18 |
immature alpha-beta T cell | 8.80e-13 | 18 |
nongranular leukocyte | 5.67e-12 | 115 |
hematopoietic oligopotent progenitor cell | 7.69e-12 | 161 |
hematopoietic multipotent progenitor cell | 7.69e-12 | 161 |
hematopoietic lineage restricted progenitor cell | 3.12e-11 | 120 |
lymphocyte of B lineage | 1.34e-10 | 24 |
pro-B cell | 1.34e-10 | 24 |
T cell | 1.41e-10 | 25 |
pro-T cell | 1.41e-10 | 25 |
plasmacytoid dendritic cell | 6.11e-10 | 3 |
natural killer cell | 6.29e-10 | 3 |
pro-NK cell | 6.29e-10 | 3 |
eosinophil | 2.55e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.69e-07 | 4 |
hemolymphoid system gland | 1.69e-07 | 4 |
thymic region | 1.69e-07 | 4 |
pharyngeal gland | 1.69e-07 | 4 |
thymus primordium | 1.69e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.