FFCP PHASE1:Hg19::chr6:10528595..10528622,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2651|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4204|TSSclassifier=S|UniProt=Q8N0V5|association_with_transcript=6bp_to_ENST00000379597,uc003mzc.3_5end|coexpression_cluster_id=C58|description=CAGE_peak_3_at_GCNT2_5end|id=chr6:10528595..10528622,+|ontology_enrichment_celltype=CL:0002009!9.61e-28!65;CL:0002194!2.29e-26!63;CL:0000576!2.29e-26!63;CL:0000040!2.29e-26!63;CL:0000559!2.29e-26!63;CL:0000839!5.19e-25!70;CL:0000557!8.85e-25!71;CL:0000766!1.86e-22!76;CL:0000860!2.32e-20!45;CL:0000738!2.75e-20!140;CL:0002087!1.61e-19!119;CL:0002031!4.36e-19!124;CL:0002057!8.21e-19!42;CL:0000763!2.71e-18!112;CL:0000049!2.71e-18!112;CL:0000037!5.76e-17!172;CL:0000566!5.76e-17!172;CL:0002032!8.32e-16!165;CL:0000837!8.32e-16!165;CL:0000988!3.67e-15!182|ontology_enrichment_celltype_v019=CL:0000473;9.29e-19;39!CL:0000234;9.29e-19;39!CL:0000860;9.89e-18;33!CL:0002057;9.89e-18;33!CL:0000576;1.45e-13;48!CL:0000766;5.17e-10;69!CL:0000235;3.06e-08;6!CL:0000148;9.94e-07;10|ontology_enrichment_celltype_v019_2=CL:0002009,6.29e-30,61;CL:0002194,8.26e-28,59;CL:0000576,8.26e-28,59;CL:0000040,8.26e-28,59;CL:0000559,8.26e-28,59;CL:0000557,6.87e-26,67;CL:0000473,7.60e-25,48;CL:0000234,7.60e-25,48;CL:0000839,1.14e-24,66;CL:0000766,1.53e-21,72;CL:0000860,5.19e-19,42;CL:0002057,5.19e-19,42;CL:0000763,1.96e-15,108;CL:0000049,1.96e-15,108;CL:0002087,5.11e-14,115;CL:0000738,6.37e-14,136;CL:0002031,8.19e-14,120;CL:0000037,2.99e-10,168;CL:0002032,8.63e-10,161;CL:0000837,8.63e-10,161;CL:0000988,6.17e-09,177;CL:0000235,4.59e-08,6;CL:0000148,8.48e-07,10;CL:0000541,8.48e-07,10|ontology_enrichment_development_v019=CL:0002057;3.71e-13;42!UBERON:0008947;6.03e-10;29!UBERON:0001041;2.64e-08;30|ontology_enrichment_disease=DOID:305!1.32e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,3.17e-11,106;DOID:0050687,5.53e-08,143|ontology_enrichment_uberon=UBERON:0002371!2.24e-21!80;UBERON:0002405!2.77e-21!115;UBERON:0002193!8.18e-21!112;UBERON:0002390!1.83e-19!102;UBERON:0003061!1.83e-19!102;UBERON:0001474!7.76e-18!86;UBERON:0004765!2.77e-12!101;UBERON:0001434!2.77e-12!101|ontology_enrichment_uberon_v019=UBERON:0001737;7.92e-10;9!UBERON:0001557;7.92e-10;9|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.02e-23,76;UBERON:0002405,1.91e-22,93;UBERON:0002193,9.30e-22,108;UBERON:0001474,1.95e-20,82;UBERON:0002390,3.73e-20,98;UBERON:0003061,3.73e-20,98;UBERON:0004765,2.63e-17,90;UBERON:0001434,3.73e-14,100;UBERON:0001737,2.50e-10,9|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,1.34465029290355,0,0,0,0.123121058076788,0,0,0.85870796139317,0.821246550437305,0.376627918784408,0.305653622991805,0.410502947249729,0.236132343941038,0.786728553697808,0.383829398097213,0.928896739896456,0,0,0,1.54934401160603,2.84338464974843,1.17440175733939,0.553995408531877,1.60435557976113,0.651032612147555,3.58264758783879,3.56283032620878,6.18181362322048,1.16318591023652,1.51150377475524,2.66842467306598,0.232429036905685,2.46700732813095,2.16794459626573,0.863077176966451,1.0246428261164,2.12834006899727,0.689491361473237,5.80936215225443,4.06279459783025,1.12945403725563,1.91034305040492,0.898893937780338,1.83650335422542,3.85114832491312,2.55734850319616,0.659702600373432,3.78980949481101,2.98357325372886,0.870627715885752,2.26954089876456,1.86846674698672,0.251248665256743,1.0429658368404,3.25783267057675,1.81619850790011,4.41933163185078,3.48108626184973,1.05627643155971,3.82687739937078,1.46761051855863,2.47122988522289,5.70672192797724,3.37523732063868,0.855038231223746,2.38700012638908,0.730656615058536,0,0.546138611262131,0.889509253863555,0.853460445133014,0,0,0.661044872784862,1.90810750907073,1.1384259382189,0.587237189370939,0,2.64342657158052,1.68152568894461,1.31692042387539,0.393419540227666,0.393010762749165,0,0.334372990781356,0.32592226663359,0.946895611469467,0,0,0,0.664601683750863,0.270803863765016,0.128091319725675,0,0.164437904603676,0.276350017785848,0,0,0.267540828089713,0,0,0.383220493601921,0.34362744548263,0,0.95569624297229,0,0,0,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0.534880391567015,0.434473211648397,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.351339142772504,1.76821751921912,0,0,1.62273696827342,2.43781632218974,3.72282289452822,0.476981248610684,1.14398982156026,0.371457501329565,0.39752481473341,0,0.694281003215189,0,0,0,0.417989933073621,1.03366703667732,1.06729878806013,1.67360306382335,0.805658634218294,0.760272105718513,0.488124115096339,0.735326160691737,0,0.714397826272638,0,0.900891843866578,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,2.48444280083672,2.19160097101532,3.61516544825223,1.98529150918309,2.61455332910887,1.89816495288877,2.83145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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2651 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4204 | |||
|TSSclassifier=S | |||
|UniProt=Q8N0V5 | |||
|association_with_transcript=6bp_to_ENST00000379597,uc003mzc.3_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_3_at_GCNT2_5end | |||
|id=chr6:10528595..10528622,+ | |||
|ontology_enrichment_celltype=CL:0002009!9.61e-28!65;CL:0002194!2.29e-26!63;CL:0000576!2.29e-26!63;CL:0000040!2.29e-26!63;CL:0000559!2.29e-26!63;CL:0000839!5.19e-25!70;CL:0000557!8.85e-25!71;CL:0000766!1.86e-22!76;CL:0000860!2.32e-20!45;CL:0000738!2.75e-20!140;CL:0002087!1.61e-19!119;CL:0002031!4.36e-19!124;CL:0002057!8.21e-19!42;CL:0000763!2.71e-18!112;CL:0000049!2.71e-18!112;CL:0000037!5.76e-17!172;CL:0000566!5.76e-17!172;CL:0002032!8.32e-16!165;CL:0000837!8.32e-16!165;CL:0000988!3.67e-15!182 | |||
|ontology_enrichment_celltype_v019=CL:0000473;9.29e-19;39!CL:0000234;9.29e-19;39!CL:0000860;9.89e-18;33!CL:0002057;9.89e-18;33!CL:0000576;1.45e-13;48!CL:0000766;5.17e-10;69!CL:0000235;3.06e-08;6!CL:0000148;9.94e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,6.29e-30,61;CL:0002194,8.26e-28,59;CL:0000576,8.26e-28,59;CL:0000040,8.26e-28,59;CL:0000559,8.26e-28,59;CL:0000557,6.87e-26,67;CL:0000473,7.60e-25,48;CL:0000234,7.60e-25,48;CL:0000839,1.14e-24,66;CL:0000766,1.53e-21,72;CL:0000860,5.19e-19,42;CL:0002057,5.19e-19,42;CL:0000763,1.96e-15,108;CL:0000049,1.96e-15,108;CL:0002087,5.11e-14,115;CL:0000738,6.37e-14,136;CL:0002031,8.19e-14,120;CL:0000037,2.99e-10,168;CL:0002032,8.63e-10,161;CL:0000837,8.63e-10,161;CL:0000988,6.17e-09,177;CL:0000235,4.59e-08,6;CL:0000148,8.48e-07,10;CL:0000541,8.48e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;3.71e-13;42!UBERON:0008947;6.03e-10;29!UBERON:0001041;2.64e-08;30 | |||
|ontology_enrichment_disease=DOID:305!1.32e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.17e-11,106;DOID:0050687,5.53e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.24e-21!80;UBERON:0002405!2.77e-21!115;UBERON:0002193!8.18e-21!112;UBERON:0002390!1.83e-19!102;UBERON:0003061!1.83e-19!102;UBERON:0001474!7.76e-18!86;UBERON:0004765!2.77e-12!101;UBERON:0001434!2.77e-12!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.92e-10;9!UBERON:0001557;7.92e-10;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.02e-23,76;UBERON:0002405,1.91e-22,93;UBERON:0002193,9.30e-22,108;UBERON:0001474,1.95e-20,82;UBERON:0002390,3.73e-20,98;UBERON:0003061,3.73e-20,98;UBERON:0004765,2.63e-17,90;UBERON:0001434,3.73e-14,100;UBERON:0001737,2.50e-10,9 | |||
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| |||
|short_description=p3@GCNT2 | |||
}} |
Revision as of 17:10, 13 September 2013
Short description: | p3@GCNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GCNT2_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 6bp_to_ENST00000379597, uc003mzc.3_5end |
EntrezGene: | GCNT2 |
HGNC: | 4204 |
UniProt: | Q8N0V5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 6.29e-30 | 61 |
monopoietic cell | 8.26e-28 | 59 |
monocyte | 8.26e-28 | 59 |
monoblast | 8.26e-28 | 59 |
promonocyte | 8.26e-28 | 59 |
granulocyte monocyte progenitor cell | 6.87e-26 | 67 |
defensive cell | 7.60e-25 | 48 |
phagocyte | 7.60e-25 | 48 |
myeloid lineage restricted progenitor cell | 1.14e-24 | 66 |
myeloid leukocyte | 1.53e-21 | 72 |
classical monocyte | 5.19e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.19e-19 | 42 |
myeloid cell | 1.96e-15 | 108 |
common myeloid progenitor | 1.96e-15 | 108 |
nongranular leukocyte | 5.11e-14 | 115 |
leukocyte | 6.37e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 8.19e-14 | 120 |
hematopoietic stem cell | 2.99e-10 | 168 |
hematopoietic oligopotent progenitor cell | 8.63e-10 | 161 |
hematopoietic multipotent progenitor cell | 8.63e-10 | 161 |
hematopoietic cell | 6.17e-09 | 177 |
macrophage | 4.59e-08 | 6 |
melanocyte | 8.48e-07 | 10 |
melanoblast | 8.48e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.02e-23 | 76 |
immune system | 1.91e-22 | 93 |
hemolymphoid system | 9.30e-22 | 108 |
bone element | 1.95e-20 | 82 |
hematopoietic system | 3.73e-20 | 98 |
blood island | 3.73e-20 | 98 |
skeletal element | 2.63e-17 | 90 |
skeletal system | 3.73e-14 | 100 |
larynx | 2.50e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.17e-11 | 106 |
cell type cancer | 5.53e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.