FFCP PHASE1:Mm9::chr2:26758305..26758348,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20935|HGNC=|MCL_coexpression_id=893|UniProt=P70279,Q3V1X4|association_with_transcript=0bp_to_ENSMUST00000142131,NM_009298,uc008iwc.1_5end|description=CAGE_peak_2_at_Surf6_5end|id=chr2:26758305..26758348,-|ontology_enrichment_celltype=CL:0000988!3.16e-11!32;CL:0002032!3.16e-11!32;CL:0000037!3.16e-11!32;CL:0000566!3.16e-11!32;CL:0000837!3.16e-11!32;CL:0002031!3.74e-08!25;CL:0000542!4.39e-08!13;CL:0000051!4.39e-08!13;CL:0000838!6.02e-08!12;CL:0000084!2.62e-07!11;CL:0000827!2.62e-07!11;CL:0000738!7.90e-07!17;CL:0002087!7.90e-07!17;CL:0000791!9.46e-07!9;CL:0000789!9.46e-07!9;CL:0002420!9.46e-07!9;CL:0002419!9.46e-07!9;CL:0000790!9.46e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,3.16e-11,32;CL:0002032,3.16e-11,32;CL:0000037,3.16e-11,32;CL:0000837,3.16e-11,32;CL:0002031,3.74e-08,25;CL:0000542,4.39e-08,13;CL:0000051,4.39e-08,13;CL:0000838,6.02e-08,12;CL:0000084,2.62e-07,11;CL:0000827,2.62e-07,11;CL:0000738,7.90e-07,17;CL:0002087,7.90e-07,17;CL:0000791,9.46e-07,9;CL:0000789,9.46e-07,9;CL:0002420,9.46e-07,9;CL:0002419,9.46e-07,9;CL:0000790,9.46e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!7.53e-10!94;UBERON:0004177!2.29e-09!29;UBERON:0002193!1.40e-08!48;UBERON:0002390!1.72e-08!45;UBERON:0003061!1.72e-08!45;UBERON:0002370!1.78e-08!23;UBERON:0000974!1.78e-08!23;UBERON:0004807!1.78e-08!23;UBERON:0005058!1.78e-08!23;UBERON:0003351!1.78e-08!23;UBERON:0009113!1.78e-08!23;UBERON:0003295!1.78e-08!23;UBERON:0009722!1.78e-08!23;UBERON:0005562!1.78e-08!23;UBERON:0007690!1.78e-08!23;UBERON:0006562!2.56e-08!24;UBERON:0001557!2.56e-08!24;UBERON:0001042!2.56e-08!24;UBERON:0008814!2.56e-08!24;UBERON:0009145!2.56e-08!24;UBERON:0007811!2.95e-08!86;UBERON:0003408!6.64e-08!24|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.27e-09,29;UBERON:0005057,2.27e-09,29;UBERON:0002193,1.39e-08,48;UBERON:0002405,1.39e-08,48;UBERON:0002390,1.71e-08,45;UBERON:0003061,1.71e-08,45;UBERON:0002370,1.77e-08,23;UBERON:0000974,1.77e-08,23;UBERON:0004807,1.77e-08,23;UBERON:0005058,1.77e-08,23;UBERON:0003351,1.77e-08,23;UBERON:0009113,1.77e-08,23;UBERON:0003295,1.77e-08,23;UBERON:0009722,1.77e-08,23;UBERON:0005562,1.77e-08,23;UBERON:0007690,1.77e-08,23;UBERON:0006562,2.53e-08,24;UBERON:0001557,2.53e-08,24;UBERON:0001042,2.53e-08,24;UBERON:0008814,2.53e-08,24;UBERON:0009145,2.53e-08,24;UBERON:0003408,6.58e-08,24;UBERON:0000153,3.78e-07,43;UBERON:0000077,6.85e-07,35|phase1_expression=7.68714466103011,3.14077866875425,2.72999543633722,1.20985684522732,0.500895729946347,6.37941233265181,6.30754129607919,11.7502224331834,64.19965730116,67.6446481070561,28.0797467889828,29.5156988282745,15.7504671536709,15.0363092160676,6.32908547449759,7.08663435864391,7.69518065940961,18.1390745080987,15.219702130237,11.8829102503448,5.86798702042381,12.8085327049142,10.4479915655574,7.35965144849671,5.50582274561208,5.16808767703518,4.30761996159075,4.74036711908956,3.42042155021473,3.2763916868791,7.53883736228036,7.62036808151557,12.3012957516914,15.8481681015439,12.7094712690561,7.14808975041517,7.75843553797003,4.18531630736908,2.3440060335714,3.66466620781659,4.70585190424811,1.36609096991689,3.39857247121808,2.64383317748712,2.53442328048786,4.22157529971868,2.34717403304412,1.52617609466313,3.95435128922049,3.30530828426282,4.19959264876088,7.18762821824858,20.3016953329861,19.5847778343063,19.8295341494054,3.34437266846731,4.29800159908135,4.64104883049698,12.3413041124355,13.7537654610729,17.1134478946668,5.76035704517525,1.77858959222228,4.04954872776629,1.97773272513395,2.8419204597844,2.39680088414724,4.2264013585371,7.77672092313582,10.6654691282036,7.99234853135252,8.85518051651791,10.3808214247258,8.32937434661688,9.87208351487835,11.0306254393203,11.0115880999389,6.12899222808901,6.29786786350598,13.1886287730194,17.6571152152651,10.4182674111352,2.79182999001381,7.31591393041184,5.80633341551878,9.42811473515737,12.6710795911202,15.4711540034999,12.4948218999754,3.09843396437821,6.66688324013859,1.72084775396277,6.11974200336975,3.77792234146472,3.24888208723835,3.58421509677868,5.19644354487482,2.72688516124892,2.59786004602869,2.47337702157238,6.90132756905734,5.13305909657271,2.54805239706646,0,5.19578498426914,3.80039798212648,5.05524445014783,5.25245846707676,17.6077760880077,5.93768556259299,5.37804512975021,7.30717147949139,8.07154240396205,5.27529241934179,9.40709657085639,5.15233024451669,7.16865406429684,3.47038456607788,6.19227386364912,7.44127509758082,6.40440403535141,8.24287930329878,9.31958806090611,9.07620470735796,10.6817820474862,4.34276993854605,17.4930081778644,13.7977628128484,16.3920592924253,5.69204429738326,5.94750783664214,15.7067940141081,5.56237824615285,7.92717917724025,7.89594569326328,7.46309810111685,7.12875546952214,7.34001126599549,7.83440551144392,6.73413938836717,10.9301172088671,4.59804208866946,6.48223667299257,5.72678307775717,6.46346741937615,7.17436833595159,6.65282244374075,8.53721123438752,11.6406716183735,10.4008344092301,9.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| ||
|EntrezGene=20935 | |||
|HGNC= | |||
|MCL_coexpression_id=893 | |||
|UniProt=P70279,Q3V1X4 | |||
|association_with_transcript=0bp_to_ENSMUST00000142131,NM_009298,uc008iwc.1_5end | |||
|description=CAGE_peak_2_at_Surf6_5end | |||
|id=chr2:26758305..26758348,- | |||
|ontology_enrichment_celltype=CL:0000988!3.16e-11!32;CL:0002032!3.16e-11!32;CL:0000037!3.16e-11!32;CL:0000566!3.16e-11!32;CL:0000837!3.16e-11!32;CL:0002031!3.74e-08!25;CL:0000542!4.39e-08!13;CL:0000051!4.39e-08!13;CL:0000838!6.02e-08!12;CL:0000084!2.62e-07!11;CL:0000827!2.62e-07!11;CL:0000738!7.90e-07!17;CL:0002087!7.90e-07!17;CL:0000791!9.46e-07!9;CL:0000789!9.46e-07!9;CL:0002420!9.46e-07!9;CL:0002419!9.46e-07!9;CL:0000790!9.46e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,3.16e-11,32;CL:0002032,3.16e-11,32;CL:0000037,3.16e-11,32;CL:0000837,3.16e-11,32;CL:0002031,3.74e-08,25;CL:0000542,4.39e-08,13;CL:0000051,4.39e-08,13;CL:0000838,6.02e-08,12;CL:0000084,2.62e-07,11;CL:0000827,2.62e-07,11;CL:0000738,7.90e-07,17;CL:0002087,7.90e-07,17;CL:0000791,9.46e-07,9;CL:0000789,9.46e-07,9;CL:0002420,9.46e-07,9;CL:0002419,9.46e-07,9;CL:0000790,9.46e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!7.53e-10!94;UBERON:0004177!2.29e-09!29;UBERON:0002193!1.40e-08!48;UBERON:0002390!1.72e-08!45;UBERON:0003061!1.72e-08!45;UBERON:0002370!1.78e-08!23;UBERON:0000974!1.78e-08!23;UBERON:0004807!1.78e-08!23;UBERON:0005058!1.78e-08!23;UBERON:0003351!1.78e-08!23;UBERON:0009113!1.78e-08!23;UBERON:0003295!1.78e-08!23;UBERON:0009722!1.78e-08!23;UBERON:0005562!1.78e-08!23;UBERON:0007690!1.78e-08!23;UBERON:0006562!2.56e-08!24;UBERON:0001557!2.56e-08!24;UBERON:0001042!2.56e-08!24;UBERON:0008814!2.56e-08!24;UBERON:0009145!2.56e-08!24;UBERON:0007811!2.95e-08!86;UBERON:0003408!6.64e-08!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.27e-09,29;UBERON:0005057,2.27e-09,29;UBERON:0002193,1.39e-08,48;UBERON:0002405,1.39e-08,48;UBERON:0002390,1.71e-08,45;UBERON:0003061,1.71e-08,45;UBERON:0002370,1.77e-08,23;UBERON:0000974,1.77e-08,23;UBERON:0004807,1.77e-08,23;UBERON:0005058,1.77e-08,23;UBERON:0003351,1.77e-08,23;UBERON:0009113,1.77e-08,23;UBERON:0003295,1.77e-08,23;UBERON:0009722,1.77e-08,23;UBERON:0005562,1.77e-08,23;UBERON:0007690,1.77e-08,23;UBERON:0006562,2.53e-08,24;UBERON:0001557,2.53e-08,24;UBERON:0001042,2.53e-08,24;UBERON:0008814,2.53e-08,24;UBERON:0009145,2.53e-08,24;UBERON:0003408,6.58e-08,24;UBERON:0000153,3.78e-07,43;UBERON:0000077,6.85e-07,35 | |||
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| |||
|short_description=p2@Surf6 | |||
}} |
Revision as of 23:32, 13 September 2013
Short description: | p2@Surf6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Surf6_5end |
Coexpression cluster: | MCL_coexpression_mm9:893 |
Association with transcript: | 0bp_to_ENSMUST00000142131, NM_009298, uc008iwc.1_5end |
EntrezGene: | Surf6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 3.16e-11 | 32 |
hematopoietic oligopotent progenitor cell | 3.16e-11 | 32 |
hematopoietic stem cell | 3.16e-11 | 32 |
hematopoietic multipotent progenitor cell | 3.16e-11 | 32 |
hematopoietic lineage restricted progenitor cell | 3.74e-08 | 25 |
lymphocyte | 4.39e-08 | 13 |
common lymphoid progenitor | 4.39e-08 | 13 |
lymphoid lineage restricted progenitor cell | 6.02e-08 | 12 |
T cell | 2.62e-07 | 11 |
pro-T cell | 2.62e-07 | 11 |
leukocyte | 7.90e-07 | 17 |
nongranular leukocyte | 7.90e-07 | 17 |
mature alpha-beta T cell | 9.46e-07 | 9 |
alpha-beta T cell | 9.46e-07 | 9 |
immature T cell | 9.46e-07 | 9 |
mature T cell | 9.46e-07 | 9 |
immature alpha-beta T cell | 9.46e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.27e-09 | 29 |
immune organ | 2.27e-09 | 29 |
hemolymphoid system | 1.39e-08 | 48 |
immune system | 1.39e-08 | 48 |
hematopoietic system | 1.71e-08 | 45 |
blood island | 1.71e-08 | 45 |
thymus | 1.77e-08 | 23 |
neck | 1.77e-08 | 23 |
respiratory system epithelium | 1.77e-08 | 23 |
hemolymphoid system gland | 1.77e-08 | 23 |
pharyngeal epithelium | 1.77e-08 | 23 |
thymic region | 1.77e-08 | 23 |
pharyngeal gland | 1.77e-08 | 23 |
entire pharyngeal arch endoderm | 1.77e-08 | 23 |
thymus primordium | 1.77e-08 | 23 |
early pharyngeal endoderm | 1.77e-08 | 23 |
pharynx | 2.53e-08 | 24 |
upper respiratory tract | 2.53e-08 | 24 |
chordate pharynx | 2.53e-08 | 24 |
pharyngeal arch system | 2.53e-08 | 24 |
pharyngeal region of foregut | 2.53e-08 | 24 |
gland of gut | 6.58e-08 | 24 |
anterior region of body | 3.78e-07 | 43 |
mixed endoderm/mesoderm-derived structure | 6.85e-07 | 35 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.