FFCP PHASE1:Hg19::chr7:142498877..142498900,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=152bp_to_AJ568018_5end|coexpression_cluster_id=C419|description=CAGE_peak_2_at_AJ568018_5end|id=chr7:142498877..142498900,+|ontology_enrichment_celltype=CL:0000084!3.56e-34!25;CL:0000827!3.56e-34!25;CL:0000542!2.78e-31!53;CL:0000051!2.78e-31!53;CL:0000791!3.05e-30!18;CL:0000789!3.05e-30!18;CL:0002420!3.05e-30!18;CL:0002419!3.05e-30!18;CL:0000790!3.05e-30!18;CL:0000838!3.18e-30!52;CL:0000625!3.73e-19!11;CL:0002087!1.16e-12!119;CL:0000624!1.93e-11!6;CL:0000738!2.87e-11!140;CL:0002031!9.94e-09!124;CL:0000037!3.05e-08!172;CL:0000566!3.05e-08!172;CL:0000988!3.35e-08!182|ontology_enrichment_celltype_v019=CL:0000791;2.26e-54;18!CL:0000789;2.26e-54;18!CL:0002419;2.26e-54;18!CL:0000084;1.57e-48;25!CL:0000625;1.60e-37;11!CL:0000624;8.12e-22;6!CL:0000542;9.95e-18;53!CL:0000898;9.90e-12;3!CL:0000815;2.16e-08;2!CL:0000792;2.16e-08;2!CL:0002677;2.16e-08;2|ontology_enrichment_celltype_v019_2=CL:0000791,1.84e-54,18;CL:0000789,1.84e-54,18;CL:0002420,1.84e-54,18;CL:0002419,1.84e-54,18;CL:0000790,1.84e-54,18;CL:0000084,1.33e-48,25;CL:0000827,1.33e-48,25;CL:0000625,1.19e-37,11;CL:0000838,4.57e-31,52;CL:0000542,2.28e-30,53;CL:0000051,2.28e-30,53;CL:0000624,8.79e-22,6;CL:0002087,5.94e-12,115;CL:0000898,7.54e-12,3;CL:0000738,2.41e-10,136;CL:0002031,4.02e-10,120;CL:0000815,1.44e-08,2;CL:0000792,1.44e-08,2;CL:0002677,1.44e-08,2;CL:0000037,2.59e-07,168|ontology_enrichment_development_v019=CL:0000790;2.26e-54;18!CL:0000051;9.95e-18;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!3.73e-16!15;UBERON:0000179!3.73e-16!15;UBERON:0000463!3.73e-16!15;UBERON:0004177!1.18e-08!7;UBERON:0002370!4.24e-08!4;UBERON:0005058!4.24e-08!4;UBERON:0009113!4.24e-08!4;UBERON:0003295!4.24e-08!4;UBERON:0005562!4.24e-08!4;UBERON:0003351!7.97e-08!6|ontology_enrichment_uberon_v019=UBERON:0002370;3.85e-09;2!UBERON:0005058;3.85e-09;2!UBERON:0009113;3.85e-09;2|ontology_enrichment_uberon_v019_2=UBERON:0003351,3.27e-10,6;UBERON:0002370,2.12e-09,4;UBERON:0005058,2.12e-09,4;UBERON:0009113,2.12e-09,4;UBERON:0003295,2.12e-09,4;UBERON:0005562,2.12e-09,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0.293600439334847,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,1.14950487990897,1.32208974556972,0,0.569212969109448,0,0,1.32171328579026,0,0,1.180258620683,3.53709686474248,4.31763147898969,3.67810289859492,1.95553359980154,1.89379122293893,1.94826728407911,3.89936599098108,5.00830042707223,6.86755073209225,3.24964636518019,3.84273959177025,3.38154303655683,5.91976456573234,6.90875044464621,2.60822777161547,3.85545064221357,2.67540828089713,5.22677619024884,2.49280553934646,2.29932296161153,3.77990190030893,1.77113784413652,3.18565414324097,1.30216690771284,3.8018081777935,1.35517607169996,1.66382594500744,4.99722906209383,2.36777252044017,1.64225599384209,1.41124720257313,2.67440195783507,2.31719046212478,0,0,0,0,0,0,0,0,0,0.221729397462564,0.263504357079378,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,1.25849830862972,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,8.82926198829301,0,0,0,0,0,0,0,1.03993478527958,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,1.18218456121156,1.2937654491571,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0,0,0.281695602532241,0.286822704408103,0,0,0.354761064070598,0,0,0.75894634753143,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,1.13929437434833,0.476463550915578,0.822724546172388,0.648473311192717,0.540031437238115,1.58625035258854,0,0,0,0.185803175125719,0,32.29839688018,0.318852545457645,0,0.5745161103971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,34.7457213865504,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0.208843899010911,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=152bp_to_AJ568018_5end | |||
|coexpression_cluster_id=C419 | |||
|description=CAGE_peak_2_at_AJ568018_5end | |||
|id=chr7:142498877..142498900,+ | |||
|ontology_enrichment_celltype=CL:0000084!3.56e-34!25;CL:0000827!3.56e-34!25;CL:0000542!2.78e-31!53;CL:0000051!2.78e-31!53;CL:0000791!3.05e-30!18;CL:0000789!3.05e-30!18;CL:0002420!3.05e-30!18;CL:0002419!3.05e-30!18;CL:0000790!3.05e-30!18;CL:0000838!3.18e-30!52;CL:0000625!3.73e-19!11;CL:0002087!1.16e-12!119;CL:0000624!1.93e-11!6;CL:0000738!2.87e-11!140;CL:0002031!9.94e-09!124;CL:0000037!3.05e-08!172;CL:0000566!3.05e-08!172;CL:0000988!3.35e-08!182 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.26e-54;18!CL:0000789;2.26e-54;18!CL:0002419;2.26e-54;18!CL:0000084;1.57e-48;25!CL:0000625;1.60e-37;11!CL:0000624;8.12e-22;6!CL:0000542;9.95e-18;53!CL:0000898;9.90e-12;3!CL:0000815;2.16e-08;2!CL:0000792;2.16e-08;2!CL:0002677;2.16e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.84e-54,18;CL:0000789,1.84e-54,18;CL:0002420,1.84e-54,18;CL:0002419,1.84e-54,18;CL:0000790,1.84e-54,18;CL:0000084,1.33e-48,25;CL:0000827,1.33e-48,25;CL:0000625,1.19e-37,11;CL:0000838,4.57e-31,52;CL:0000542,2.28e-30,53;CL:0000051,2.28e-30,53;CL:0000624,8.79e-22,6;CL:0002087,5.94e-12,115;CL:0000898,7.54e-12,3;CL:0000738,2.41e-10,136;CL:0002031,4.02e-10,120;CL:0000815,1.44e-08,2;CL:0000792,1.44e-08,2;CL:0002677,1.44e-08,2;CL:0000037,2.59e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;2.26e-54;18!CL:0000051;9.95e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.73e-16!15;UBERON:0000179!3.73e-16!15;UBERON:0000463!3.73e-16!15;UBERON:0004177!1.18e-08!7;UBERON:0002370!4.24e-08!4;UBERON:0005058!4.24e-08!4;UBERON:0009113!4.24e-08!4;UBERON:0003295!4.24e-08!4;UBERON:0005562!4.24e-08!4;UBERON:0003351!7.97e-08!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.85e-09;2!UBERON:0005058;3.85e-09;2!UBERON:0009113;3.85e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003351,3.27e-10,6;UBERON:0002370,2.12e-09,4;UBERON:0005058,2.12e-09,4;UBERON:0009113,2.12e-09,4;UBERON:0003295,2.12e-09,4;UBERON:0005562,2.12e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0.293600439334847,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,1.14950487990897,1.32208974556972,0,0.569212969109448,0,0,1.32171328579026,0,0,1.180258620683,3.53709686474248,4.31763147898969,3.67810289859492,1.95553359980154,1.89379122293893,1.94826728407911,3.89936599098108,5.00830042707223,6.86755073209225,3.24964636518019,3.84273959177025,3.38154303655683,5.91976456573234,6.90875044464621,2.60822777161547,3.85545064221357,2.67540828089713,5.22677619024884,2.49280553934646,2.29932296161153,3.77990190030893,1.77113784413652,3.18565414324097,1.30216690771284,3.8018081777935,1.35517607169996,1.66382594500744,4.99722906209383,2.36777252044017,1.64225599384209,1.41124720257313,2.67440195783507,2.31719046212478,0,0,0,0,0,0,0,0,0,0.221729397462564,0.263504357079378,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,1.25849830862972,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,8.82926198829301,0,0,0,0,0,0,0,1.03993478527958,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,1.18218456121156,1.2937654491571,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0,0,0.281695602532241,0.286822704408103,0,0,0.354761064070598,0,0,0.75894634753143,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,1.13929437434833,0.476463550915578,0.822724546172388,0.648473311192717,0.540031437238115,1.58625035258854,0,0,0,0.185803175125719,0,32.29839688018,0.318852545457645,0,0.5745161103971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,34.7457213865504,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828478110694391,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829412415681711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0.79994958341972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0.0657727735628491,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.231522474323834,0,1.88126918544609,0,0,0,0,0,0,0.187967835959707,0.193373663920732,0,0,0,0,0,0,0.143339583151451,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.714193294391221,10.0112810245809,8.81460943001182,0,0,0,0,0,0.740872583160463,0,0,0,0,0,0,0,0,0,0,2.61655931668334,0 | |||
|short_description=p2@AJ568018 | |||
}} |
Revision as of 23:42, 13 September 2013
Short description: | p2@AJ568018 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_AJ568018_5end |
Coexpression cluster: | C419_acute_chronic_thymus_xeroderma_Burkitt_Hodgkin_CD4 |
Association with transcript: | 152bp_to_AJ568018_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.84e-54 | 18 |
alpha-beta T cell | 1.84e-54 | 18 |
immature T cell | 1.84e-54 | 18 |
mature T cell | 1.84e-54 | 18 |
immature alpha-beta T cell | 1.84e-54 | 18 |
T cell | 1.33e-48 | 25 |
pro-T cell | 1.33e-48 | 25 |
CD8-positive, alpha-beta T cell | 1.19e-37 | 11 |
lymphoid lineage restricted progenitor cell | 4.57e-31 | 52 |
lymphocyte | 2.28e-30 | 53 |
common lymphoid progenitor | 2.28e-30 | 53 |
CD4-positive, alpha-beta T cell | 8.79e-22 | 6 |
nongranular leukocyte | 5.94e-12 | 115 |
naive T cell | 7.54e-12 | 3 |
leukocyte | 2.41e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 4.02e-10 | 120 |
regulatory T cell | 1.44e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.44e-08 | 2 |
naive regulatory T cell | 1.44e-08 | 2 |
hematopoietic stem cell | 2.59e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
pharyngeal epithelium | 3.27e-10 | 6 |
thymus | 2.12e-09 | 4 |
hemolymphoid system gland | 2.12e-09 | 4 |
thymic region | 2.12e-09 | 4 |
pharyngeal gland | 2.12e-09 | 4 |
thymus primordium | 2.12e-09 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.