FFCP PHASE1:Hg19::chr9:116279770..116279847,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5998|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9999|TSSclassifier=W|UniProt=|association_with_transcript=122bp_to_ENST00000460000_5end|coexpression_cluster_id=C8|description=CAGE_peak_3_at_RGS3_5end|id=chr9:116279770..116279847,+|ontology_enrichment_celltype=CL:0000738!6.53e-27!140;CL:0000988!1.26e-24!182;CL:0002087!5.36e-24!119;CL:0000037!7.66e-22!172;CL:0000566!7.66e-22!172;CL:0002031!1.85e-20!124;CL:0002032!4.54e-19!165;CL:0000837!4.54e-19!165;CL:0000838!3.24e-17!52;CL:0000542!1.31e-16!53;CL:0000051!1.31e-16!53;CL:0000791!7.04e-16!18;CL:0000789!7.04e-16!18;CL:0002420!7.04e-16!18;CL:0002419!7.04e-16!18;CL:0000790!7.04e-16!18;CL:0000084!4.02e-15!25;CL:0000827!4.02e-15!25;CL:0000625!7.00e-12!11;CL:0000766!1.58e-09!76;CL:0000860!4.73e-09!45;CL:0002057!5.34e-09!42;CL:0002194!3.00e-07!63;CL:0000576!3.00e-07!63;CL:0000040!3.00e-07!63;CL:0000559!3.00e-07!63;CL:0000557!4.84e-07!71;CL:0002009!9.99e-07!65|ontology_enrichment_celltype_v019=CL:0000625;5.59e-23;11!CL:0000791;1.75e-20;18!CL:0000789;1.75e-20;18!CL:0002419;1.75e-20;18!CL:0000084;4.07e-18;25!CL:0000542;1.27e-12;53!CL:0002087;2.12e-09;104!CL:0000623;5.94e-08;3!CL:0000767;1.50e-07;3!CL:0000226;2.98e-07;3!CL:0000842;2.98e-07;3!CL:0000945;8.28e-07;24|ontology_enrichment_celltype_v019_2=CL:0000838,5.73e-27,52;CL:0000542,2.77e-26,53;CL:0000051,2.77e-26,53;CL:0000738,6.13e-25,136;CL:0000625,6.08e-23,11;CL:0000988,1.85e-22,177;CL:0002087,5.54e-22,115;CL:0000791,1.32e-20,18;CL:0000789,1.32e-20,18;CL:0002420,1.32e-20,18;CL:0002419,1.32e-20,18;CL:0000790,1.32e-20,18;CL:0000037,2.35e-18,168;CL:0000084,3.22e-18,25;CL:0000827,3.22e-18,25;CL:0002031,7.37e-18,120;CL:0002032,1.17e-15,161;CL:0000837,1.17e-15,161;CL:0000623,5.96e-08,3;CL:0000825,5.96e-08,3;CL:0000767,1.41e-07,3;CL:0000226,3.05e-07,3;CL:0000842,3.05e-07,3;CL:0000945,8.60e-07,24;CL:0000826,8.60e-07,24|ontology_enrichment_development_v019=CL:0000790;1.75e-20;18!CL:0000051;1.27e-12;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.02e-16!112;UBERON:0002390!9.75e-16!102;UBERON:0003061!9.75e-16!102;UBERON:0000178!2.48e-14!15;UBERON:0000179!2.48e-14!15;UBERON:0000463!2.48e-14!15;UBERON:0007023!6.65e-12!115;UBERON:0002405!4.40e-07!115;UBERON:0004177!4.69e-07!7|ontology_enrichment_uberon_v019=UBERON:0000178;5.46e-28;15!UBERON:0000179;5.46e-28;15!UBERON:0000463;5.46e-28;15!UBERON:0002390;8.69e-21;32!UBERON:0002193;2.05e-11;42!UBERON:0004177;1.47e-09;5!UBERON:0005057;1.47e-09;5|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.87e-28,15;UBERON:0000179,4.87e-28,15;UBERON:0000463,4.87e-28,15;UBERON:0002390,3.78e-15,98;UBERON:0003061,3.78e-15,98;UBERON:0002193,7.13e-14,108;UBERON:0004177,5.96e-13,7;UBERON:0005057,5.96e-13,7;UBERON:0002370,6.63e-08,4;UBERON:0005058,6.63e-08,4;UBERON:0009113,6.63e-08,4;UBERON:0003295,6.63e-08,4;UBERON:0005562,6.63e-08,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,44.3197753338117,40.5576911882732,43.6057728477783,29.8956850405167,42.6050631887906,12.5401059886022,0,0,0,0.154934401160603,2.13253848731132,0,8.30993112797816,10.4283112684474,13.237663113667,0.447830948479849,1.94336199611388,0.257575567634187,0.581592955118259,0.377875943688809,0.242584061187816,0.697287110717054,0.411167888021826,0,1.1507695692886,0.256160706529101,0.236482229888585,1.37898272294647,0.645484683583826,0,0.188242339542605,0.272906150057846,0.674170453335254,2.14258724659632,0.320929027076094,0.639337125799041,0.989553900560148,0.398927315243264,0,0.870627715885752,1.13477044938228,0,2.00998932205395,0.521482918420201,0.434377689410233,1.21079900526674,1.10483290796269,1.58231193720442,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,1.17447437874188,0.382273228125229,2.64342657158052,15.694239763483,0.263384084775077,0.983548850569165,1.96505381374582,0.822405995998037,0.501559486172034,0.32592226663359,0,0,2.22820913770347,0.589211814949674,0.443067789167242,0.812411591295047,1.15282187753108,0.780356085359269,7.89301942097645,9.67225062250469,5.79606171470105,0.14828656316206,0,0,1.13309342697566,2.68254345521345,0.68725489096526,3.28925599625354,12.1054857443157,13.6727525309848,12.3558765778289,23.6402936952103,25.8532954531925,26.2354525759926,17.2847393992132,29.5606078891577,29.4345845108109,32.0928234940209,15.4962112154595,0,0,0,0,0,0,0,0,1.70162670895322,1.10864698731282,1.14185221401064,1.5062593682237,0,0,0.324547393654683,0,0.132957960518865,0.715471872916026,0.571994910780128,0.371457501329565,0,0,0,0,0,0.825354125820202,0,0.516833518338658,0,0,0,0.760272105718513,0.24406205754817,0,0,0.267899184852239,0.44905874525234,0.225222960966644,0,0,0.549605231791222,5.27121669744253,11.6334079244498,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0.98667019366864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5998 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9999 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=122bp_to_ENST00000460000_5end | |||
|coexpression_cluster_id=C8 | |||
|description=CAGE_peak_3_at_RGS3_5end | |||
|id=chr9:116279770..116279847,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.53e-27!140;CL:0000988!1.26e-24!182;CL:0002087!5.36e-24!119;CL:0000037!7.66e-22!172;CL:0000566!7.66e-22!172;CL:0002031!1.85e-20!124;CL:0002032!4.54e-19!165;CL:0000837!4.54e-19!165;CL:0000838!3.24e-17!52;CL:0000542!1.31e-16!53;CL:0000051!1.31e-16!53;CL:0000791!7.04e-16!18;CL:0000789!7.04e-16!18;CL:0002420!7.04e-16!18;CL:0002419!7.04e-16!18;CL:0000790!7.04e-16!18;CL:0000084!4.02e-15!25;CL:0000827!4.02e-15!25;CL:0000625!7.00e-12!11;CL:0000766!1.58e-09!76;CL:0000860!4.73e-09!45;CL:0002057!5.34e-09!42;CL:0002194!3.00e-07!63;CL:0000576!3.00e-07!63;CL:0000040!3.00e-07!63;CL:0000559!3.00e-07!63;CL:0000557!4.84e-07!71;CL:0002009!9.99e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000625;5.59e-23;11!CL:0000791;1.75e-20;18!CL:0000789;1.75e-20;18!CL:0002419;1.75e-20;18!CL:0000084;4.07e-18;25!CL:0000542;1.27e-12;53!CL:0002087;2.12e-09;104!CL:0000623;5.94e-08;3!CL:0000767;1.50e-07;3!CL:0000226;2.98e-07;3!CL:0000842;2.98e-07;3!CL:0000945;8.28e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,5.73e-27,52;CL:0000542,2.77e-26,53;CL:0000051,2.77e-26,53;CL:0000738,6.13e-25,136;CL:0000625,6.08e-23,11;CL:0000988,1.85e-22,177;CL:0002087,5.54e-22,115;CL:0000791,1.32e-20,18;CL:0000789,1.32e-20,18;CL:0002420,1.32e-20,18;CL:0002419,1.32e-20,18;CL:0000790,1.32e-20,18;CL:0000037,2.35e-18,168;CL:0000084,3.22e-18,25;CL:0000827,3.22e-18,25;CL:0002031,7.37e-18,120;CL:0002032,1.17e-15,161;CL:0000837,1.17e-15,161;CL:0000623,5.96e-08,3;CL:0000825,5.96e-08,3;CL:0000767,1.41e-07,3;CL:0000226,3.05e-07,3;CL:0000842,3.05e-07,3;CL:0000945,8.60e-07,24;CL:0000826,8.60e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000790;1.75e-20;18!CL:0000051;1.27e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.02e-16!112;UBERON:0002390!9.75e-16!102;UBERON:0003061!9.75e-16!102;UBERON:0000178!2.48e-14!15;UBERON:0000179!2.48e-14!15;UBERON:0000463!2.48e-14!15;UBERON:0007023!6.65e-12!115;UBERON:0002405!4.40e-07!115;UBERON:0004177!4.69e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.46e-28;15!UBERON:0000179;5.46e-28;15!UBERON:0000463;5.46e-28;15!UBERON:0002390;8.69e-21;32!UBERON:0002193;2.05e-11;42!UBERON:0004177;1.47e-09;5!UBERON:0005057;1.47e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.87e-28,15;UBERON:0000179,4.87e-28,15;UBERON:0000463,4.87e-28,15;UBERON:0002390,3.78e-15,98;UBERON:0003061,3.78e-15,98;UBERON:0002193,7.13e-14,108;UBERON:0004177,5.96e-13,7;UBERON:0005057,5.96e-13,7;UBERON:0002370,6.63e-08,4;UBERON:0005058,6.63e-08,4;UBERON:0009113,6.63e-08,4;UBERON:0003295,6.63e-08,4;UBERON:0005562,6.63e-08,4 | |||
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| |||
|short_description=p3@RGS3 | |||
}} |
Revision as of 07:03, 14 September 2013
Short description: | p3@RGS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RGS3_5end |
Coexpression cluster: | C8_Natural_CD8_Basophils_CD4_CD14_Peripheral_CD34 |
Association with transcript: | 122bp_to_ENST00000460000_5end |
EntrezGene: | RGS3 |
HGNC: | 9999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 5.73e-27 | 52 |
lymphocyte | 2.77e-26 | 53 |
common lymphoid progenitor | 2.77e-26 | 53 |
leukocyte | 6.13e-25 | 136 |
CD8-positive, alpha-beta T cell | 6.08e-23 | 11 |
hematopoietic cell | 1.85e-22 | 177 |
nongranular leukocyte | 5.54e-22 | 115 |
mature alpha-beta T cell | 1.32e-20 | 18 |
alpha-beta T cell | 1.32e-20 | 18 |
immature T cell | 1.32e-20 | 18 |
mature T cell | 1.32e-20 | 18 |
immature alpha-beta T cell | 1.32e-20 | 18 |
hematopoietic stem cell | 2.35e-18 | 168 |
T cell | 3.22e-18 | 25 |
pro-T cell | 3.22e-18 | 25 |
hematopoietic lineage restricted progenitor cell | 7.37e-18 | 120 |
hematopoietic oligopotent progenitor cell | 1.17e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-15 | 161 |
natural killer cell | 5.96e-08 | 3 |
pro-NK cell | 5.96e-08 | 3 |
basophil | 1.41e-07 | 3 |
single nucleate cell | 3.05e-07 | 3 |
mononuclear cell | 3.05e-07 | 3 |
lymphocyte of B lineage | 8.60e-07 | 24 |
pro-B cell | 8.60e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
blood | 4.87e-28 | 15 |
haemolymphatic fluid | 4.87e-28 | 15 |
organism substance | 4.87e-28 | 15 |
hematopoietic system | 3.78e-15 | 98 |
blood island | 3.78e-15 | 98 |
hemolymphoid system | 7.13e-14 | 108 |
hemopoietic organ | 5.96e-13 | 7 |
immune organ | 5.96e-13 | 7 |
thymus | 6.63e-08 | 4 |
hemolymphoid system gland | 6.63e-08 | 4 |
thymic region | 6.63e-08 | 4 |
pharyngeal gland | 6.63e-08 | 4 |
thymus primordium | 6.63e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.