FFCP PHASE1:Hg19::chrX:118108571..118108589,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79836|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21152|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000304778,ENST00000365713,ENST00000481285_5end|coexpression_cluster_id=C7|description=CAGE_peak_1_at_LONRF3_5end|id=chrX:118108571..118108589,+|ontology_enrichment_celltype=CL:0000766!1.12e-29!76;CL:0000763!9.57e-28!112;CL:0000049!9.57e-28!112;CL:0000557!1.01e-27!71;CL:0002009!3.13e-26!65;CL:0002194!2.00e-25!63;CL:0000576!2.00e-25!63;CL:0000040!2.00e-25!63;CL:0000559!2.00e-25!63;CL:0000839!2.74e-25!70;CL:0000860!5.22e-25!45;CL:0002057!1.39e-23!42;CL:0000037!9.83e-22!172;CL:0000566!9.83e-22!172;CL:0000738!1.00e-20!140;CL:0000988!4.55e-20!182;CL:0002032!7.79e-20!165;CL:0000837!7.79e-20!165;CL:0002031!2.24e-16!124;CL:0002087!5.51e-16!119|ontology_enrichment_celltype_v019=CL:0000860;1.15e-29;33!CL:0002057;1.15e-29;33!CL:0000473;1.59e-28;39!CL:0000234;1.59e-28;39!CL:0000576;9.73e-16;48!CL:0000766;7.32e-14;69!CL:0000763;8.69e-10;100|ontology_enrichment_celltype_v019_2=CL:0000473,1.33e-34,48;CL:0000234,1.33e-34,48;CL:0000766,1.33e-30,72;CL:0000860,2.60e-30,42;CL:0002057,2.60e-30,42;CL:0000557,1.26e-28,67;CL:0000763,1.08e-27,108;CL:0000049,1.08e-27,108;CL:0002009,4.29e-27,61;CL:0002194,4.94e-26,59;CL:0000576,4.94e-26,59;CL:0000040,4.94e-26,59;CL:0000559,4.94e-26,59;CL:0000839,1.52e-25,66;CL:0000037,7.43e-24,168;CL:0000738,1.20e-22,136;CL:0000988,3.39e-22,177;CL:0002032,2.88e-21,161;CL:0000837,2.88e-21,161;CL:0002087,5.84e-18,115;CL:0002031,6.28e-18,120|ontology_enrichment_development_v019=CL:0002057;9.14e-23;42!CL:0000049;1.16e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.84e-22!102;UBERON:0003061!2.84e-22!102;UBERON:0007023!9.25e-22!115;UBERON:0002371!1.76e-21!80;UBERON:0002193!8.99e-21!112;UBERON:0002405!1.04e-19!115;UBERON:0001474!3.50e-19!86;UBERON:0004765!1.33e-13!101;UBERON:0001434!1.33e-13!101;UBERON:0001049!3.09e-09!57;UBERON:0005068!3.09e-09!57;UBERON:0006241!3.09e-09!57;UBERON:0007135!3.09e-09!57;UBERON:0003080!4.46e-07!42|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.69e-23,76;UBERON:0001474,1.02e-21,82;UBERON:0002390,4.98e-21,98;UBERON:0003061,4.98e-21,98;UBERON:0002193,1.58e-19,108;UBERON:0002405,5.07e-19,93;UBERON:0004765,6.43e-18,90;UBERON:0001434,1.98e-15,100;UBERON:0007023,1.90e-13,114;UBERON:0001737,6.32e-07,9;UBERON:0001049,8.61e-07,56;UBERON:0005068,8.61e-07,56;UBERON:0006241,8.61e-07,56;UBERON:0007135,8.61e-07,56|phase1_expression=0.181678379270557,1.2846031433459,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0,0,0,0,4.32700704533794,4.60595277716655,6.34746105595912,0,0,0,0,0,1.17440175733939,7.75593571944628,18.8511780621933,17.577880527984,0.223915474239924,0.971680998056939,0.257575567634187,20.0649569515799,27.9628198329719,22.5603176904669,26.9617682810594,38.6497814740516,40.8812409581537,59.8400176030073,66.8579444040953,50.6071971961572,46.1959212187069,41.9565044329487,58.233389235567,29.5540473081889,24.2886473551483,14.6070264889305,41.3213254700718,33.6975478429898,44.1142616801338,34.3045352194185,36.7013130023803,37.9340027974098,15.6712988859435,16.4541715160431,14.3249117268982,78.1383348948471,57.8846039446424,59.0753657597917,11.502590550034,13.6262725315399,8.86094684834476,0.845021145247767,2.12604299965044,1.04829322754188,4.04383072127382,3.45406853535464,3.69668849403284,0,0.59675003159727,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,1.14681968437569,0,3.36305137788922,0.526768169550154,2.360517241366,8.64623678048162,2.67281948699362,0.334372990781356,2.60737813306872,2.8406868344084,3.89653456815823,0,0.883817722424512,1.32920336750173,0.270803863765016,0.128091319725675,0.260118695119756,0,0,0.289803085735052,1.77943875794473,1.33770414044857,1.04535523804977,0.113309342697566,3.06576394881537,1.37450978193052,0.506039384039006,1.27426165729639,1.30216690771284,3.8018081777935,2.40920190524436,0.76791966692651,0,1.18388626022008,0.821127996921047,2.41928091869679,8.02320587350522,3.76543450095277,0,0.670700859703636,0,0,0,0,0,0,0,0,0.175669571386252,1.0478326039817,0,0,0.97364218096405,1.0447784237956,4.65352861816028,0.715471872916026,5.14795419702115,2.22874500797739,0.198762407366705,0.860234595106124,0.347140501607594,1.13061588384802,0,1.10047216776027,1.25396979922086,1.03366703667732,0,0,0,0,0,0.367663080345869,2.43042584364528,2.14319347881791,3.59246996201872,2.92789849256638,0,0.949265659568129,1.83201743930407,1.31780417436063,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,1.48181739276657,0.653847612453835,0,0,0,0,0,0,0,0,0,0,0.368502951935304,0.206651562351531,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,2.36613600079688,2.52877035117153,2.89213235860178,3.970583018366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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79836 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21152 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000304778,ENST00000365713,ENST00000481285_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_LONRF3_5end | |||
|id=chrX:118108571..118108589,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.12e-29!76;CL:0000763!9.57e-28!112;CL:0000049!9.57e-28!112;CL:0000557!1.01e-27!71;CL:0002009!3.13e-26!65;CL:0002194!2.00e-25!63;CL:0000576!2.00e-25!63;CL:0000040!2.00e-25!63;CL:0000559!2.00e-25!63;CL:0000839!2.74e-25!70;CL:0000860!5.22e-25!45;CL:0002057!1.39e-23!42;CL:0000037!9.83e-22!172;CL:0000566!9.83e-22!172;CL:0000738!1.00e-20!140;CL:0000988!4.55e-20!182;CL:0002032!7.79e-20!165;CL:0000837!7.79e-20!165;CL:0002031!2.24e-16!124;CL:0002087!5.51e-16!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.15e-29;33!CL:0002057;1.15e-29;33!CL:0000473;1.59e-28;39!CL:0000234;1.59e-28;39!CL:0000576;9.73e-16;48!CL:0000766;7.32e-14;69!CL:0000763;8.69e-10;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.33e-34,48;CL:0000234,1.33e-34,48;CL:0000766,1.33e-30,72;CL:0000860,2.60e-30,42;CL:0002057,2.60e-30,42;CL:0000557,1.26e-28,67;CL:0000763,1.08e-27,108;CL:0000049,1.08e-27,108;CL:0002009,4.29e-27,61;CL:0002194,4.94e-26,59;CL:0000576,4.94e-26,59;CL:0000040,4.94e-26,59;CL:0000559,4.94e-26,59;CL:0000839,1.52e-25,66;CL:0000037,7.43e-24,168;CL:0000738,1.20e-22,136;CL:0000988,3.39e-22,177;CL:0002032,2.88e-21,161;CL:0000837,2.88e-21,161;CL:0002087,5.84e-18,115;CL:0002031,6.28e-18,120 | |||
|ontology_enrichment_development_v019=CL:0002057;9.14e-23;42!CL:0000049;1.16e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.84e-22!102;UBERON:0003061!2.84e-22!102;UBERON:0007023!9.25e-22!115;UBERON:0002371!1.76e-21!80;UBERON:0002193!8.99e-21!112;UBERON:0002405!1.04e-19!115;UBERON:0001474!3.50e-19!86;UBERON:0004765!1.33e-13!101;UBERON:0001434!1.33e-13!101;UBERON:0001049!3.09e-09!57;UBERON:0005068!3.09e-09!57;UBERON:0006241!3.09e-09!57;UBERON:0007135!3.09e-09!57;UBERON:0003080!4.46e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.69e-23,76;UBERON:0001474,1.02e-21,82;UBERON:0002390,4.98e-21,98;UBERON:0003061,4.98e-21,98;UBERON:0002193,1.58e-19,108;UBERON:0002405,5.07e-19,93;UBERON:0004765,6.43e-18,90;UBERON:0001434,1.98e-15,100;UBERON:0007023,1.90e-13,114;UBERON:0001737,6.32e-07,9;UBERON:0001049,8.61e-07,56;UBERON:0005068,8.61e-07,56;UBERON:0006241,8.61e-07,56;UBERON:0007135,8.61e-07,56 | |||
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| |||
|short_description=p1@LONRF3 | |||
}} |
Revision as of 10:32, 14 September 2013
Short description: | p1@LONRF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LONRF3_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000304778, ENST00000365713, ENST00000481285_5end |
EntrezGene: | LONRF3 |
HGNC: | 21152 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.33e-34 | 48 |
phagocyte | 1.33e-34 | 48 |
myeloid leukocyte | 1.33e-30 | 72 |
classical monocyte | 2.60e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.60e-30 | 42 |
granulocyte monocyte progenitor cell | 1.26e-28 | 67 |
myeloid cell | 1.08e-27 | 108 |
common myeloid progenitor | 1.08e-27 | 108 |
macrophage dendritic cell progenitor | 4.29e-27 | 61 |
monopoietic cell | 4.94e-26 | 59 |
monocyte | 4.94e-26 | 59 |
monoblast | 4.94e-26 | 59 |
promonocyte | 4.94e-26 | 59 |
myeloid lineage restricted progenitor cell | 1.52e-25 | 66 |
hematopoietic stem cell | 7.43e-24 | 168 |
leukocyte | 1.20e-22 | 136 |
hematopoietic cell | 3.39e-22 | 177 |
hematopoietic oligopotent progenitor cell | 2.88e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.88e-21 | 161 |
nongranular leukocyte | 5.84e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 6.28e-18 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.69e-23 | 76 |
bone element | 1.02e-21 | 82 |
hematopoietic system | 4.98e-21 | 98 |
blood island | 4.98e-21 | 98 |
hemolymphoid system | 1.58e-19 | 108 |
immune system | 5.07e-19 | 93 |
skeletal element | 6.43e-18 | 90 |
skeletal system | 1.98e-15 | 100 |
adult organism | 1.90e-13 | 114 |
larynx | 6.32e-07 | 9 |
neural tube | 8.61e-07 | 56 |
neural rod | 8.61e-07 | 56 |
future spinal cord | 8.61e-07 | 56 |
neural keel | 8.61e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.