FFCP PHASE1:Hg19::chr1:2407723..2407740,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9651 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29037 | |||
|TSSclassifier=strong | |||
|UniProt=A6NGX9,O75038 | |||
|association_with_transcript=-13bp_to_ENST00000288766,ENST00000378486,ENST00000378488,NM_014638,uc001aji.1_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_3_at_PLCH2_5end | |||
|id=chr1:2407723..2407740,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.28e-53;3 | |||
|ontology_enrichment_disease=DOID:3093!6.54e-07!11 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!1.57e-37!2;UBERON:0002757!1.57e-37!2;UBERON:0010134!1.57e-37!2;UBERON:0002784!1.57e-37!2;UBERON:0005408!1.57e-37!2;UBERON:0001899!1.57e-37!2;UBERON:0003296!2.48e-19!4;UBERON:0010133!2.48e-19!4;UBERON:0000966!1.40e-15!5;UBERON:0005388!1.40e-15!5;UBERON:0001802!1.40e-15!5;UBERON:0000970!7.16e-15!20;UBERON:0002104!3.50e-14!21;UBERON:0000020!5.57e-13!23;UBERON:0001032!1.87e-12!24;UBERON:0004456!1.87e-12!24;UBERON:0001894!1.77e-11!7;UBERON:0006222!1.77e-11!7;UBERON:0002360!2.27e-10!2;UBERON:0000094!2.27e-10!2;UBERON:0007645!2.27e-10!2;UBERON:0000019!3.15e-09!19;UBERON:0000047!3.15e-09!19;UBERON:0004088!3.15e-09!19;UBERON:0003072!3.15e-09!19;UBERON:0003071!3.15e-09!19;UBERON:0004128!3.15e-09!19;UBERON:0001456!2.10e-08!21;UBERON:0003056!2.02e-07!61;UBERON:0003075!2.23e-07!86;UBERON:0007284!2.23e-07!86;UBERON:0005743!2.82e-07!86;UBERON:0002346!4.81e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.28e-79;2!UBERON:0002757;1.28e-79;2!UBERON:0010134;1.28e-79;2!UBERON:0005408;1.28e-79;2!UBERON:0001899;1.28e-79;2!UBERON:0003296;1.64e-40;4!UBERON:0010133;1.64e-40;4!UBERON:0002784;1.64e-40;4!UBERON:0000966;2.16e-32;5!UBERON:0005388;2.16e-32;5!UBERON:0001802;2.16e-32;5!UBERON:0001894;1.08e-23;7!UBERON:0000970;1.56e-18;20!UBERON:0002104;1.07e-17;21!UBERON:0000020;3.09e-16;23!UBERON:0001032;1.34e-15;24!UBERON:0004456;1.34e-15;24!UBERON:0000019;2.41e-09;19!UBERON:0000047;2.41e-09;19!UBERON:0004088;2.41e-09;19!UBERON:0010230;2.41e-09;19!UBERON:0001456;1.50e-08;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.56e-79,2;UBERON:0002757,1.56e-79,2;UBERON:0010134,1.56e-79,2;UBERON:0005408,1.56e-79,2;UBERON:0001899,1.56e-79,2;UBERON:0003296,1.81e-40,4;UBERON:0010133,1.81e-40,4;UBERON:0002784,1.81e-40,4;UBERON:0000966,3.11e-27,6;UBERON:0005388,3.11e-27,6;UBERON:0001802,3.11e-27,6;UBERON:0001894,1.14e-23,7;UBERON:0006222,1.14e-23,7;UBERON:0000970,1.04e-17,21;UBERON:0002104,1.04e-17,21;UBERON:0000020,1.31e-15,24;UBERON:0001032,1.31e-15,24;UBERON:0004456,1.31e-15,24;UBERON:0003056,6.50e-11,61;UBERON:0000019,6.17e-09,20;UBERON:0000047,6.17e-09,20;UBERON:0010312,6.17e-09,20;UBERON:0004088,6.17e-09,20;UBERON:0010230,6.17e-09,20;UBERON:0003072,6.17e-09,20;UBERON:0004128,6.17e-09,20;UBERON:0003071,6.17e-09,20;UBERON:0003075,2.59e-08,82;UBERON:0007284,2.59e-08,82;UBERON:0001456,3.27e-08,22;UBERON:0002346,5.87e-08,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.64951851951331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.0355275381743,21.8584419442236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.07684949196217,2.3702041759909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659643100472575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@PLCH2 | |||
}} |
Revision as of 15:55, 10 January 2014
Short description: | p3@PLCH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLCH2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -13bp_to_ENST00000288766, ENST00000378486, ENST00000378488, NM_014638, uc001aji.1_5end |
EntrezGene: | PLCH2 |
HGNC: | 29037 |
UniProt: | A6NGX9O75038 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.56e-79 | 2 |
regional part of epithalamus | 1.56e-79 | 2 |
secretory circumventricular organ | 1.56e-79 | 2 |
circumventricular organ | 1.56e-79 | 2 |
epithalamus | 1.56e-79 | 2 |
gland of diencephalon | 1.81e-40 | 4 |
neuroendocrine gland | 1.81e-40 | 4 |
regional part of diencephalon | 1.81e-40 | 4 |
retina | 3.11e-27 | 6 |
photoreceptor array | 3.11e-27 | 6 |
posterior segment of eyeball | 3.11e-27 | 6 |
diencephalon | 1.14e-23 | 7 |
future diencephalon | 1.14e-23 | 7 |
eye | 1.04e-17 | 21 |
visual system | 1.04e-17 | 21 |
sense organ | 1.31e-15 | 24 |
sensory system | 1.31e-15 | 24 |
entire sense organ system | 1.31e-15 | 24 |
pre-chordal neural plate | 6.50e-11 | 61 |
camera-type eye | 6.17e-09 | 20 |
simple eye | 6.17e-09 | 20 |
immature eye | 6.17e-09 | 20 |
ocular region | 6.17e-09 | 20 |
eyeball of camera-type eye | 6.17e-09 | 20 |
optic cup | 6.17e-09 | 20 |
optic vesicle | 6.17e-09 | 20 |
eye primordium | 6.17e-09 | 20 |
neural plate | 2.59e-08 | 82 |
presumptive neural plate | 2.59e-08 | 82 |
face | 3.27e-08 | 22 |
neurectoderm | 5.87e-08 | 86 |