FFCP PHASE1:Hg19::chr11:10326612..10326630,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=133 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=259 | |||
|TSSclassifier=strong | |||
|UniProt=E9PML4,E9PQE6,E9PL83,P35318 | |||
|association_with_transcript=0bp_to_ENST00000524948,ENST00000528655,ENST00000530439,ENST00000534464,uc001mik.1_5end | |||
|description=CAGE_peak_1_at_ADM_5end | |||
|id=chr11:10326612..10326630,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.02e-17!180;CL:0000057!7.19e-16!75;CL:0002371!2.13e-12!591;CL:0000548!8.44e-12!679;CL:0000004!8.44e-12!679;CL:0000255!8.44e-12!679;CL:0000012!4.68e-11!682;CL:0000144!1.56e-10!625;CL:0002620!3.49e-10!23;CL:0000136!3.20e-09!15;CL:0002057!5.14e-09!42;CL:0000680!5.75e-08!57;CL:0000056!5.75e-08!57;CL:0000355!5.75e-08!57;CL:0000860!5.85e-08!45;CL:0000222!5.98e-08!119;CL:0000048!6.73e-08!430;CL:0000183!1.69e-07!59;CL:0000723!1.80e-07!436;CL:0000187!3.30e-07!54;CL:0000034!5.70e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.06e-11;33!CL:0002057;9.06e-11;33!CL:0002620;3.38e-10;23!CL:0000136;2.31e-08;13!CL:0000473;1.16e-07;39!CL:0000234;1.16e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.66e-16,76;CL:0002620,3.45e-10,23;CL:0000136,3.17e-09,15;CL:0000860,5.08e-09,42;CL:0002057,5.08e-09,42;CL:0000048,3.35e-08,427;CL:0000680,4.09e-08,58;CL:0000056,4.09e-08,58;CL:0000355,4.09e-08,58;CL:0000222,5.39e-08,121;CL:0000473,6.57e-08,48;CL:0000234,6.57e-08,48;CL:0000723,9.19e-08,433;CL:0000187,2.36e-07,55;CL:0000034,2.93e-07,441;CL:0000393,8.32e-07,61;CL:0000211,8.32e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;4.11e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.58e-16!659;UBERON:0000480!6.01e-15!626;UBERON:0000467!8.41e-15!625;UBERON:0003102!1.78e-11!95;UBERON:0000914!7.31e-11!83;UBERON:0002329!7.31e-11!83;UBERON:0003077!7.31e-11!83;UBERON:0003059!7.31e-11!83;UBERON:0007282!7.31e-11!83;UBERON:0009618!7.31e-11!83;UBERON:0007285!7.31e-11!83;UBERON:0000926!7.47e-11!448;UBERON:0004120!7.47e-11!448;UBERON:0006603!7.47e-11!448;UBERON:0000486!2.73e-10!82;UBERON:0004290!7.33e-10!70;UBERON:0005256!9.66e-10!143;UBERON:0002199!1.57e-09!45;UBERON:0002416!1.57e-09!45;UBERON:0002204!2.53e-09!167;UBERON:0002100!3.67e-09!216;UBERON:0002097!2.79e-08!40;UBERON:0001134!1.23e-07!61;UBERON:0002036!1.23e-07!61;UBERON:0003082!1.23e-07!61;UBERON:0004923!2.55e-07!57;UBERON:0002385!2.86e-07!63;UBERON:0001015!2.86e-07!63;UBERON:0000383!2.86e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;5.81e-07;41!UBERON:0003102;8.69e-07;50!UBERON:0002199;8.73e-07;46!UBERON:0002416;8.73e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.81e-11,99;UBERON:0000926,3.54e-11,315;UBERON:0004120,3.54e-11,315;UBERON:0006603,3.54e-11,315;UBERON:0002204,8.47e-11,167;UBERON:0000486,1.91e-10,83;UBERON:0002199,4.62e-10,46;UBERON:0002416,4.62e-10,46;UBERON:0002329,5.15e-10,71;UBERON:0003059,5.15e-10,71;UBERON:0007282,5.15e-10,71;UBERON:0004290,5.15e-10,71;UBERON:0009618,5.15e-10,71;UBERON:0007503,1.28e-09,78;UBERON:0007524,1.41e-09,73;UBERON:0003077,1.42e-09,72;UBERON:0007285,1.42e-09,72;UBERON:0005256,2.68e-09,122;UBERON:0002097,8.44e-09,41;UBERON:0000490,2.59e-08,148;UBERON:0003104,3.06e-08,160;UBERON:0009142,3.06e-08,160;UBERON:0002100,6.27e-08,199;UBERON:0001134,8.76e-08,62;UBERON:0002036,8.76e-08,62;UBERON:0003082,8.76e-08,62;UBERON:0004923,8.92e-08,66;UBERON:0002385,2.05e-07,64;UBERON:0001015,2.05e-07,64;UBERON:0000383,2.05e-07,64 | |||
|phase1_expression=811.920676960118,513.627156814469,611.742113776515,694.508690570725,321.811987987647,678.679371750087,253.299878168311,147.190730508452,547.706262335061,156.28678361496,54.4284911018493,56.1394326374543,46.4229881682078,269.439350394022,246.228250165841,51.0967111303349,34.3535880973667,43.088295332855,33.1794303177545,136.171890232927,177.888602764989,37.6145665773705,8.5870796139317,11.2237028559765,14.0607756346179,8.17623441503079,3.69452652524756,4.80135766013443,88.5069622910034,53.7361157336098,106.049044471512,42.2933763260306,23.7952675834818,28.8408127930094,0,1.27952309238679,2.93600439334847,154.010723571862,140.180568781629,80.9450547770127,39.4091234662267,28.8265362756892,35.2878527658836,135.947353258893,177.223817590052,122.747534961035,291.466012279728,299.741390367911,336.031412421187,421.46935475195,348.890882292635,417.154653523464,491.952086411155,274.97647520671,427.94769763812,236.808863144597,249.982033452987,312.365643378668,595.027086769035,437.10533487764,469.273450336496,217.701858123233,226.391251400552,168.358776460414,612.341493506312,424.404148068973,499.503443694451,301.498398308092,272.214083415345,336.642709292931,606.610301638636,429.043445925513,538.618983424385,12.8865724650284,18.4965740969588,16.9823502861784,25.6109279014009,25.8304255687391,17.5190889499817,20.8059302931111,27.0526680990763,27.2169589109305,0,2.18455444504853,0,8.96133467389665,0.800791974072025,1.72425731986345,0,0.954053754535364,1.1384259382189,3.52342313622563,1.14681968437569,0,21.2993253932984,1.31692042387539,0.590129310341499,0.786021525498329,1.02800749499755,0.167186495390678,0,0,1.94826728407911,0,0,0,0,0,0,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0.34362744548263,0,0.637130828648193,0.651083453856419,0.950452044448374,1.20460095262218,0.255973222308837,2.49861453104692,1.4206635122641,0,1.20964045934839,1.33720097891754,0.868946423296794,56.0755792522112,138.164377098949,430.768970850854,163.009057725439,332.888372662231,411.943499924583,38.1737254584528,175.675188179252,29.5893977723532,23.2815867335692,29.248983635811,38.6388272718252,142.803753010677,93.8084640244606,11.3591587779139,5.92041106817509,10.1048049994338,2.62339686735876,2.85997455390064,0.371457501329565,98.5861540538857,69.6790022035961,89.9093899163669,56.530794192401,59.9884193780165,30.8132206972876,52.2487416342026,120.939043291246,102.104917391086,264.429284084089,139.378943719765,98.0751016376881,266.759828900149,64.7087021408729,61.5707880390137,49.3827497410961,31.8831709129161,26.6889208745474,59.7934886116945,89.2309719994041,54.2277162034006,366.349560472256,915.161423390048,149.144165832747,99.891362290759,71.7995001138167,429.535382558082,248.400513568473,56.0376043873404,56.0677600142307,45.9020681637731,14.8000529050296,98.9651092571257,64.3917012493109,54.1058899305548,436.212106472692,248.33182345088,273.921753813708,129.546431884583,128.926631669046,197.272258328377,86.0794875058797,126.260896607143,115.731464722653,144.33699907721,80.2108092045845,150.442337391914,477.577148627386,750.949664218977,377.716965204281,371.525579318995,87.0297709142522,66.5630525718849,199.209099033128,195.345041291973,539.112032810476,386.562525566674,56.0354984810504,757.741821149753,963.998053127013,1333.47552209596,638.293761371524,614.090021731857,1244.14616788034,821.333686991306,201.181388031589,297.572613762301,1102.88315967254,1637.65974674515,993.15337309478,973.08129308804,335.202230803359,376.085393744662,31.1149973592908,28.9110887826285,31.5485054927904,33.0548743611204,28.6264299574408,89.3531420666596,35.4520808152567,110.26421183265,28.4682340079147,1351.72395932961,1096.08255868068,672.71706698658,1633.6463708165,1180.99483201144,82.1049192276517,81.7635746878793,54.4684927536669,105.882213823098,118.962176474454,67.6221264466625,42.606693378612,38.0669642343171,35.3967384390679,33.9551509127338,148.656280231653,129.23423955806,136.718101588554,26.6185573125845,33.4161253670393,96.2987547890689,0,90.1505254521022,256.150740775699,66.0696718159926,43.8366837704716,30.8623945303707,33.0540749215951,461.34456031942,48.8769349081402,180.414177531592,71.1812686546972,53.4209558772989,186.232717611785,288.902959847805,290.708344614466,15.0138835612262,11.1603201072333,63.5239875705485,12.6362303175188,23.1864613170416,69.363037150215,27.2131047682152,23.9599914339633,38.8683988530362,28.1914920358543,46.7726868581558,0.492663237895943,2.0251139823042,13.4763275101502,29.1122305902262,5.30218220390796,5.58781469771088,17.9534560012391,9.37739577680376,88.9576719318067,13.984539007652,3.30377363628309,7.14566081576446,474.538748949567,526.203803081769,370.431681681619,6.33431407213111,1956.3807588098,79.458458740264,194.93263945671,190.3336095478,144.550544335324,52.484178848613,124.419157600518,199.454301153116,78.1375111763678,138.304376579169,66.1244454116282,192.62243621846,91.8664172602778,103.996585085557,88.0248793186297,16.5955165362215,51.0819878693,53.2392516918054,69.57520002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| |||
|short_description=p1@ADM | |||
}} |
Revision as of 06:33, 11 January 2014
Short description: | p1@ADM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ADM_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000524948, ENST00000528655, ENST00000530439, ENST00000534464, uc001mik.1_5end |
EntrezGene: | ADM |
HGNC: | 259 |
UniProt: | E9PML4E9PQE6E9PL83P35318 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.66e-16 | 76 |
skin fibroblast | 3.45e-10 | 23 |
fat cell | 3.17e-09 | 15 |
classical monocyte | 5.08e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.08e-09 | 42 |
multi fate stem cell | 3.35e-08 | 427 |
muscle precursor cell | 4.09e-08 | 58 |
myoblast | 4.09e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.09e-08 | 58 |
mesodermal cell | 5.39e-08 | 121 |
defensive cell | 6.57e-08 | 48 |
phagocyte | 6.57e-08 | 48 |
somatic stem cell | 9.19e-08 | 433 |
muscle cell | 2.36e-07 | 55 |
stem cell | 2.93e-07 | 441 |
electrically responsive cell | 8.32e-07 | 61 |
electrically active cell | 8.32e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.81e-11 | 99 |
mesoderm | 3.54e-11 | 315 |
mesoderm-derived structure | 3.54e-11 | 315 |
presumptive mesoderm | 3.54e-11 | 315 |
musculoskeletal system | 8.47e-11 | 167 |
multilaminar epithelium | 1.91e-10 | 83 |
integument | 4.62e-10 | 46 |
integumental system | 4.62e-10 | 46 |
somite | 5.15e-10 | 71 |
presomitic mesoderm | 5.15e-10 | 71 |
presumptive segmental plate | 5.15e-10 | 71 |
dermomyotome | 5.15e-10 | 71 |
trunk paraxial mesoderm | 5.15e-10 | 71 |
epithelial vesicle | 1.28e-09 | 78 |
dense mesenchyme tissue | 1.41e-09 | 73 |
paraxial mesoderm | 1.42e-09 | 72 |
presumptive paraxial mesoderm | 1.42e-09 | 72 |
trunk mesenchyme | 2.68e-09 | 122 |
skin of body | 8.44e-09 | 41 |
unilaminar epithelium | 2.59e-08 | 148 |
mesenchyme | 3.06e-08 | 160 |
entire embryonic mesenchyme | 3.06e-08 | 160 |
trunk | 6.27e-08 | 199 |
skeletal muscle tissue | 8.76e-08 | 62 |
striated muscle tissue | 8.76e-08 | 62 |
myotome | 8.76e-08 | 62 |
organ component layer | 8.92e-08 | 66 |
muscle tissue | 2.05e-07 | 64 |
musculature | 2.05e-07 | 64 |
musculature of body | 2.05e-07 | 64 |