FFCP PHASE1:Hg19::chr2:113587599..113587616,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr2:113587599..113587616,- | |||
|id=chr2:113587599..113587616,- | |||
|ontology_enrichment_celltype=CL:0002057!3.45e-35!42;CL:0000860!2.70e-32!45;CL:0002194!5.64e-24!63;CL:0000576!5.64e-24!63;CL:0000040!5.64e-24!63;CL:0000559!5.64e-24!63;CL:0002009!5.44e-23!65;CL:0000766!1.26e-21!76;CL:0000839!8.88e-21!70;CL:0000557!2.26e-20!71;CL:0000763!4.55e-15!112;CL:0000049!4.55e-15!112;CL:0002087!8.93e-12!119;CL:0000359!3.93e-11!32;CL:0000738!2.09e-10!140;CL:0002031!3.29e-09!124;CL:0000037!7.44e-09!172;CL:0000566!7.44e-09!172;CL:0002032!3.79e-08!165;CL:0000837!3.79e-08!165;CL:0002595!4.43e-08!5;CL:0000988!6.86e-08!182;CL:0000192!1.09e-07!42;CL:0000514!1.09e-07!42;CL:0000034!2.43e-07!444;CL:0000723!3.19e-07!436;CL:0002621!4.07e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.36e-70;33!CL:0002057;8.36e-70;33!CL:0000473;4.46e-48;39!CL:0000234;4.46e-48;39!CL:0000576;1.53e-40;48!CL:0000766;3.13e-24;69!CL:0000763;1.17e-12;100!CL:0002087;1.51e-12;104!CL:0002393;1.16e-10;6!CL:0002397;1.16e-10;6!CL:0000738;5.37e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.63e-81,42;CL:0002057,5.63e-81,42;CL:0000473,2.49e-70,48;CL:0000234,2.49e-70,48;CL:0002194,1.67e-60,59;CL:0000576,1.67e-60,59;CL:0000040,1.67e-60,59;CL:0000559,1.67e-60,59;CL:0002009,2.06e-58,61;CL:0000839,9.94e-54,66;CL:0000557,7.10e-53,67;CL:0000766,5.92e-49,72;CL:0000763,2.53e-31,108;CL:0000049,2.53e-31,108;CL:0002087,3.65e-29,115;CL:0002031,8.98e-28,120;CL:0000738,5.28e-24,136;CL:0002032,1.34e-19,161;CL:0000837,1.34e-19,161;CL:0000037,1.34e-18,168;CL:0000988,1.99e-17,177;CL:0000034,1.08e-08,441;CL:0000048,3.03e-08,427;CL:0000134,4.33e-08,354;CL:0000723,4.66e-08,433;CL:0002320,7.75e-08,361;CL:0002393,2.95e-07,9;CL:0002397,2.95e-07,9;CL:0000219,6.02e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;2.18e-57;42!CL:0000049;2.48e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;6.86e-08;1!DOID:3165;6.86e-08;1!DOID:0060121;6.86e-08;1!DOID:2438;6.86e-08;1!DOID:4418;6.86e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,7.10e-08,1;DOID:3165,7.10e-08,1;DOID:0060121,7.10e-08,1;DOID:2438,7.10e-08,1;DOID:4418,7.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003081!7.36e-18!216;UBERON:0002371!3.43e-17!80;UBERON:0002204!1.02e-16!167;UBERON:0002390!2.49e-16!102;UBERON:0003061!2.49e-16!102;UBERON:0001474!1.90e-15!86;UBERON:0002193!4.34e-14!112;UBERON:0004765!5.05e-13!101;UBERON:0001434!5.05e-13!101;UBERON:0002405!2.36e-11!115;UBERON:0001637!7.33e-09!42;UBERON:0003509!7.33e-09!42;UBERON:0004572!7.33e-09!42;UBERON:0003834!4.43e-08!5;UBERON:0001533!4.43e-08!5;UBERON:0004573!1.19e-07!33;UBERON:0004571!1.19e-07!33;UBERON:0001949!4.07e-07!3 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.49e-46,76;UBERON:0001474,1.58e-42,82;UBERON:0004765,2.12e-38,90;UBERON:0002405,4.94e-37,93;UBERON:0002390,6.14e-35,98;UBERON:0003061,6.14e-35,98;UBERON:0001434,3.70e-34,100;UBERON:0002193,2.53e-31,108;UBERON:0002204,1.74e-24,167;UBERON:0003081,4.94e-21,203;UBERON:0000926,5.39e-13,315;UBERON:0004120,5.39e-13,315;UBERON:0006603,5.39e-13,315;UBERON:0002384,1.71e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46062018077475,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.309632246632152,0,0.30120591877825,0,0,0,0,5.53995408531877,6.01633342410425,3.68918480216948,0,0,0,0,0,0,1.85943229524548,0.822335776043652,0.309706370895104,3.74000110018796,3.84241059793651,13.0065226438722,13.4450815487281,9.68227025375739,8.12558919566051,0,0.272906150057846,1.57306439111559,19.8954530041087,13.1580901101198,23.0161365287655,0,0,0,11.8985787837719,23.2627942123367,28.6498234537965,1.25624332628372,3.12889751052121,3.47502151528187,6.65939452896706,15.8359383474653,59.1784664514454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0.308033580176089,0,0,0.18532421910392,0.715624433709956,0,0,0,0,0,0.318203247925937,0,0,0,0,0.404364963146632,0,1.26377536871694,0,0.487426979262569,1.05650146756755,0,0,0,0,0.66343897524122,0.876901770507525,0,0,0.811641507850816,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0.332423363800313,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,2.18586072873289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0.573409195690071,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0.73927574994817,0.318593534327405,2.24901556081802,0.465788870628778,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.354996002191696,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:113587599..113587616,- | |||
}} |
Revision as of 04:58, 21 January 2014
Short description: | p@chr2:113587599..113587616, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:113587599..113587616, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.63e-81 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.63e-81 | 42 |
defensive cell | 2.49e-70 | 48 |
phagocyte | 2.49e-70 | 48 |
monopoietic cell | 1.67e-60 | 59 |
monocyte | 1.67e-60 | 59 |
monoblast | 1.67e-60 | 59 |
promonocyte | 1.67e-60 | 59 |
macrophage dendritic cell progenitor | 2.06e-58 | 61 |
myeloid lineage restricted progenitor cell | 9.94e-54 | 66 |
granulocyte monocyte progenitor cell | 7.10e-53 | 67 |
myeloid leukocyte | 5.92e-49 | 72 |
myeloid cell | 2.53e-31 | 108 |
common myeloid progenitor | 2.53e-31 | 108 |
nongranular leukocyte | 3.65e-29 | 115 |
hematopoietic lineage restricted progenitor cell | 8.98e-28 | 120 |
leukocyte | 5.28e-24 | 136 |
hematopoietic oligopotent progenitor cell | 1.34e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.34e-19 | 161 |
hematopoietic stem cell | 1.34e-18 | 168 |
hematopoietic cell | 1.99e-17 | 177 |
stem cell | 1.08e-08 | 441 |
multi fate stem cell | 3.03e-08 | 427 |
mesenchymal cell | 4.33e-08 | 354 |
somatic stem cell | 4.66e-08 | 433 |
connective tissue cell | 7.75e-08 | 361 |
intermediate monocyte | 2.95e-07 | 9 |
CD14-positive, CD16-positive monocyte | 2.95e-07 | 9 |
motile cell | 6.02e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.49e-46 | 76 |
bone element | 1.58e-42 | 82 |
skeletal element | 2.12e-38 | 90 |
immune system | 4.94e-37 | 93 |
hematopoietic system | 6.14e-35 | 98 |
blood island | 6.14e-35 | 98 |
skeletal system | 3.70e-34 | 100 |
hemolymphoid system | 2.53e-31 | 108 |
musculoskeletal system | 1.74e-24 | 167 |
lateral plate mesoderm | 4.94e-21 | 203 |
mesoderm | 5.39e-13 | 315 |
mesoderm-derived structure | 5.39e-13 | 315 |
presumptive mesoderm | 5.39e-13 | 315 |
connective tissue | 1.71e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 7.10e-08 | 1 |
skin benign neoplasm | 7.10e-08 | 1 |
integumentary system benign neoplasm | 7.10e-08 | 1 |
dermis tumor | 7.10e-08 | 1 |
cutaneous fibrous histiocytoma | 7.10e-08 | 1 |