FFCP PHASE1:Hg19::chr3:15469168..15469179,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85403 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20907 | |||
|TSSclassifier=strong | |||
|UniProt=B4E3F5,F8WFA5 | |||
|association_with_transcript=63bp_to_ENST00000432764,ENST00000449565_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_2_at_EAF1_5end | |||
|id=chr3:15469168..15469179,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.31e-36!42;CL:0000860!4.87e-34!45;CL:0002009!1.71e-25!65;CL:0000766!3.69e-25!76;CL:0002194!3.43e-24!63;CL:0000576!3.43e-24!63;CL:0000040!3.43e-24!63;CL:0000559!3.43e-24!63;CL:0000557!4.80e-24!71;CL:0000839!3.61e-22!70;CL:0000738!2.76e-15!140;CL:0000763!1.09e-13!112;CL:0000049!1.09e-13!112;CL:0002087!5.73e-13!119;CL:0002031!4.10e-12!124;CL:0000037!6.40e-10!172;CL:0000566!6.40e-10!172;CL:0000988!1.59e-08!182;CL:0002032!4.77e-08!165;CL:0000837!4.77e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.88e-110;33!CL:0002057;4.88e-110;33!CL:0000473;7.44e-82;39!CL:0000234;7.44e-82;39!CL:0000576;4.29e-61;48!CL:0000766;5.62e-39;69!CL:0000763;3.56e-17;100!CL:0002087;1.83e-15;104!CL:0000767;6.28e-13;3!CL:0000738;1.67e-10;136!CL:0002393;4.32e-07;6!CL:0002397;4.32e-07;6!CL:0000988;9.62e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.98e-114,42;CL:0002057,3.98e-114,42;CL:0000473,1.46e-104,48;CL:0000234,1.46e-104,48;CL:0002194,5.51e-82,59;CL:0000576,5.51e-82,59;CL:0000040,5.51e-82,59;CL:0000559,5.51e-82,59;CL:0002009,4.51e-79,61;CL:0000766,2.65e-78,72;CL:0000839,1.51e-72,66;CL:0000557,2.33e-71,67;CL:0000763,1.49e-49,108;CL:0000049,1.49e-49,108;CL:0002087,3.30e-43,115;CL:0000738,4.28e-42,136;CL:0002031,1.97e-36,120;CL:0000037,2.05e-32,168;CL:0002032,1.84e-30,161;CL:0000837,1.84e-30,161;CL:0000988,2.56e-30,177;CL:0000134,3.70e-14,354;CL:0002320,1.06e-13,361;CL:0000767,6.03e-13,3;CL:0000219,4.40e-12,386;CL:0000034,4.97e-11,441;CL:0000048,7.03e-11,427;CL:0000723,1.36e-10,433 | |||
|ontology_enrichment_development_v019=CL:0002057;3.74e-82;42!CL:0000049;1.16e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!1.45e-23!86;UBERON:0002371!3.04e-23!80;UBERON:0004765!4.11e-21!101;UBERON:0001434!4.11e-21!101;UBERON:0002390!3.46e-19!102;UBERON:0003061!3.46e-19!102;UBERON:0002193!6.44e-17!112;UBERON:0002405!2.27e-14!115;UBERON:0002204!2.89e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.06e-65,76;UBERON:0001474,2.45e-60,82;UBERON:0002390,4.20e-55,98;UBERON:0003061,4.20e-55,98;UBERON:0004765,2.77e-54,90;UBERON:0002405,2.79e-52,93;UBERON:0002193,3.03e-49,108;UBERON:0001434,4.57e-48,100;UBERON:0002204,3.93e-27,167;UBERON:0003081,1.24e-23,203;UBERON:0002384,4.50e-13,371;UBERON:0000926,5.35e-13,315;UBERON:0004120,5.35e-13,315;UBERON:0006603,5.35e-13,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,3.14691421479123,4.98978217526377,7.7408061658038,0,0,0,0,0,0.293600439334847,14.9578760303607,18.8511780621933,11.5015761479401,0,0,0,2.4717700592526,4.91238726795452,2.18325655069035,6.27558399645349,6.57868620834921,6.81354015969228,22.7276989934499,30.2269633704339,22.9387762991928,9.65287906062532,5.16387746867061,2.70852973188684,6.40023954444856,5.45812300115692,1.12361742222542,4.89734227793444,8.66508373105453,3.19668562899521,13.1940520074686,16.1565562673522,12.3605177654481,6.96502172708602,5.6738522469114,4.9825779919646,21.8586338773367,28.1600775946909,20.415751402281,6.65939452896706,9.57521853567668,5.37986058649504,0.633765858935825,0.850417199860174,0.209658645508376,0.786300418025466,1.35159203557356,2.08943262706204,0,0.19891667719909,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,2.80254281490768,0,0.196709770113833,0.786021525498329,0.411202997999018,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0.795285947051099,0,0.0945348171640679,0,0,0,0,0,0.324547393654683,0,0.26591592103773,0.476981248610684,0.571994910780128,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662045904066094,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0.113432183160021,0.89694817844431,0,0,0,0.103052529238439,0,0,0.506328996723799,0.0974370051611986,0,0.0920498986422993,0,0,0,0,0,0,0.286804595389004,0,0.132529768321485,0,0.10366105501537,0.252320850875628,0,0,0,0,0.928735856063958,0,0.236613600079688,0.168584690078102,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0.790204397959275,0.858486162094873,0.246217006087397,1.40402559083543,0,0,0.16798212819886,0,0,0,0,0.985326475791887,0,0,0.288239906833923,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,0,0,0.325736184293735,0,0,0.602878754119172,0.871533458600294,0.899756920638513,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0,0.513372145118994,0,0,0.773288812777695,0,0,0.749007023947182,0,0.414415513436035,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0.82707210449155,1.72571360654893,2.02782359826544,0,0,0,0,0,0,0,0,0,0,0,0.532685175939381,0,0,0.116210378459959,0,0.40101294060657,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.082509499920588,0.574265537996172,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.255225424989168,0,0,0,1.3940745403212,0,0,0.869932992075073,0,0.143124886741991,0,0,0,0,0,0.318203247925937,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.71623345421307,0.296964680832639,0.307160702099232,0,0.140669416410513,0.111308705022906,0,0.63337622438398,0,0,0,0.511343412510774,0.369254416383208,0.622079175323615,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0.291604613383254,0.173624994933292,0,0.361789315876224,0,0,0,0.438770794307945,0,0,0.0769502585037971,0.569710279235006,0,0.448788222048861,0,1.27600463892768,0,0,0,0,0,0,0,0.167821586975843,0,0.158936578980379,0.421996129056054,0,0.141353071433941,0,0,0,0,0,0,0.104421949505455,0,0,0.468528891450678,0,0.19566461893209,0.485560759068186,0,0,0,0.442306057399416,0.150323419414493,0,0,0,0.627865836814451,0,0,0,0,0,0.174118413160805,0,0,0,0,0.0821154570532092,0,0.176512253383001,0,0,0,0.633107959558787,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0.407712618220842,0.313808538937,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0.795229689809303,0,0.160753148465019,0.137539436597234,0.415440338029185,0.449947783103001,0.77380195455795,0.121499113316049,0,0.0788057072991982,0.0524545881349981,0.211200673038813,0,0.191915197319445,0,0,0.25426853765475,0,1.72844298240254,0.326587360109409,0,0,0.170388021785422,0,0.146552233678082,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0.197611631897944,0,0,0,0.2506898940227,0.306345576763462,0,0,0.886068179966986,0.122026264901963,0,0,0.332787154610557,0.558867626472451,0,0.124980407962107,0.151649117541648,0.285465333544967,0,0,0,0,0,1.10961172300523,0.189403005275089,0.50313580350515,1.77962244319307,0.457680136793847,0.453692771289717,0.15543720058278,0,0.159296767163702,0,0.155262956876259,0.829412415681711,0.265841714557995,0,0.450772826991655,1.90402606084398,0,0.545545977607678,0.537052785212442,0.928067519756987,0,0,0,0,0,0,0.21444159137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| |||
|short_description=p2@EAF1 | |||
}} |
Revision as of 17:37, 21 January 2014
Short description: | p2@EAF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_EAF1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 63bp_to_ENST00000432764, ENST00000449565_5end |
EntrezGene: | EAF1 |
HGNC: | 20907 |
UniProt: | B4E3F5F8WFA5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.98e-114 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.98e-114 | 42 |
defensive cell | 1.46e-104 | 48 |
phagocyte | 1.46e-104 | 48 |
monopoietic cell | 5.51e-82 | 59 |
monocyte | 5.51e-82 | 59 |
monoblast | 5.51e-82 | 59 |
promonocyte | 5.51e-82 | 59 |
macrophage dendritic cell progenitor | 4.51e-79 | 61 |
myeloid leukocyte | 2.65e-78 | 72 |
myeloid lineage restricted progenitor cell | 1.51e-72 | 66 |
granulocyte monocyte progenitor cell | 2.33e-71 | 67 |
myeloid cell | 1.49e-49 | 108 |
common myeloid progenitor | 1.49e-49 | 108 |
nongranular leukocyte | 3.30e-43 | 115 |
leukocyte | 4.28e-42 | 136 |
hematopoietic lineage restricted progenitor cell | 1.97e-36 | 120 |
hematopoietic stem cell | 2.05e-32 | 168 |
hematopoietic oligopotent progenitor cell | 1.84e-30 | 161 |
hematopoietic multipotent progenitor cell | 1.84e-30 | 161 |
hematopoietic cell | 2.56e-30 | 177 |
mesenchymal cell | 3.70e-14 | 354 |
connective tissue cell | 1.06e-13 | 361 |
basophil | 6.03e-13 | 3 |
motile cell | 4.40e-12 | 386 |
stem cell | 4.97e-11 | 441 |
multi fate stem cell | 7.03e-11 | 427 |
somatic stem cell | 1.36e-10 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.06e-65 | 76 |
bone element | 2.45e-60 | 82 |
hematopoietic system | 4.20e-55 | 98 |
blood island | 4.20e-55 | 98 |
skeletal element | 2.77e-54 | 90 |
immune system | 2.79e-52 | 93 |
hemolymphoid system | 3.03e-49 | 108 |
skeletal system | 4.57e-48 | 100 |
musculoskeletal system | 3.93e-27 | 167 |
lateral plate mesoderm | 1.24e-23 | 203 |
connective tissue | 4.50e-13 | 371 |
mesoderm | 5.35e-13 | 315 |
mesoderm-derived structure | 5.35e-13 | 315 |
presumptive mesoderm | 5.35e-13 | 315 |