FFCP PHASE1:Hg19::chr3:49377405..49377416,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7375 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12627 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=45bp_to_ENST00000486549_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_6_at_USP4_5end | |||
|id=chr3:49377405..49377416,- | |||
|ontology_enrichment_celltype=CL:0000766!1.86e-35!76;CL:0000763!1.47e-33!112;CL:0000049!1.47e-33!112;CL:0002057!5.89e-32!42;CL:0000037!4.41e-31!172;CL:0000566!4.41e-31!172;CL:0000988!6.99e-31!182;CL:0000839!2.06e-30!70;CL:0002032!1.15e-29!165;CL:0000837!1.15e-29!165;CL:0000860!2.06e-28!45;CL:0000738!5.58e-28!140;CL:0002194!3.52e-27!63;CL:0000576!3.52e-27!63;CL:0000040!3.52e-27!63;CL:0000559!3.52e-27!63;CL:0000557!3.63e-27!71;CL:0002009!1.30e-25!65;CL:0002031!1.52e-22!124;CL:0002087!2.07e-22!119;CL:0000134!6.29e-11!358;CL:0002320!6.68e-10!365;CL:0000048!1.97e-09!430;CL:0000723!6.74e-09!436;CL:0000219!1.48e-08!390;CL:0000034!2.68e-08!444;CL:0000094!2.05e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.19e-90;33!CL:0002057;2.19e-90;33!CL:0000473;1.73e-66;39!CL:0000234;1.73e-66;39!CL:0000576;3.30e-45;48!CL:0000766;2.37e-33;69!CL:0000763;3.19e-20;100!CL:0000094;6.94e-16;8!CL:0000775;6.23e-12;3!CL:0000081;2.32e-11;11!CL:0002087;4.24e-11;104!CL:0000738;2.04e-10;136!CL:0000771;2.93e-08;2!CL:0000988;5.47e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.13e-81,42;CL:0002057,8.13e-81,42;CL:0000473,3.12e-74,48;CL:0000234,3.12e-74,48;CL:0000766,2.30e-70,72;CL:0002194,1.15e-57,59;CL:0000576,1.15e-57,59;CL:0000040,1.15e-57,59;CL:0000559,1.15e-57,59;CL:0002009,1.58e-55,61;CL:0000839,2.72e-54,66;CL:0000763,3.65e-54,108;CL:0000049,3.65e-54,108;CL:0000557,2.30e-53,67;CL:0000738,8.69e-35,136;CL:0002032,5.01e-33,161;CL:0000837,5.01e-33,161;CL:0000037,6.26e-33,168;CL:0000988,2.09e-32,177;CL:0002087,1.63e-27,115;CL:0002031,3.62e-26,120;CL:0000094,5.96e-16,8;CL:0000775,4.67e-12,3;CL:0000134,1.05e-11,354;CL:0000081,2.08e-11,11;CL:0002320,2.85e-11,361;CL:0000219,9.47e-10,386;CL:0000048,1.63e-08,427;CL:0000771,2.68e-08,2;CL:0000723,3.00e-08,433;CL:0000034,6.62e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.18e-61;42!CL:0000049;1.61e-16;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.93e-34!112;UBERON:0002390!8.44e-33!102;UBERON:0003061!8.44e-33!102;UBERON:0002371!5.16e-24!80;UBERON:0001474!6.09e-23!86;UBERON:0002405!1.32e-20!115;UBERON:0004765!1.10e-18!101;UBERON:0001434!1.10e-18!101;UBERON:0003081!1.06e-16!216;UBERON:0002204!6.10e-10!167;UBERON:0000178!3.32e-09!15;UBERON:0000179!3.32e-09!15;UBERON:0000463!3.32e-09!15;UBERON:0002384!3.38e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.12e-51,98;UBERON:0003061,3.12e-51,98;UBERON:0002193,4.91e-48,108;UBERON:0002371,4.23e-46,76;UBERON:0002405,1.81e-43,93;UBERON:0001474,3.92e-42,82;UBERON:0004765,1.17e-37,90;UBERON:0001434,4.56e-33,100;UBERON:0003081,5.15e-25,203;UBERON:0002204,1.83e-16,167;UBERON:0000926,1.88e-12,315;UBERON:0004120,1.88e-12,315;UBERON:0006603,1.88e-12,315;UBERON:0002384,1.11e-10,371 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0,0,0,0.872338524100369,0,0.631719873426831,0,0.245733936501509,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0,0.286235987131057,0,0,0.382067028739756,0.246301768349837,0.393553906568396,0.393364276848904,1.15148819429164,0.464448369948228,0,0,0,0.542270404062111,0.426507697462265,0.293600439334847,0.553995408531877,0.601633342410425,1.51907609501096,0,0.647787332037959,0.77272670290256,3.34415949192999,3.02300754951048,1.21292030593908,6.27558399645349,4.93401465626191,4.33588919253145,5.75384784644301,1.2808035326455,4.02019790810595,6.55016793399575,1.93645405075148,2.70852973188684,4.70605848856512,2.18324920046277,3.37085226667627,4.59125838556354,4.17207735198922,2.55734850319616,2.30895910130701,2.79249120670285,1.70489900213078,3.19230162491442,2.26954089876456,3.11411124497787,6.02996796616184,1.0429658368404,3.25783267057675,4.84319602106695,2.20966581592539,2.84816148696796,0.845021145247767,0.637812899895131,0.838634582033504,1.01095768031846,0.600707571366025,0.64290234678832,0.285012743741249,0,0.365328307529268,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0.535081656179426,0,0.453237370790265,0,0.34362744548263,0,0.318565414324097,0,0,0,0,0,0.473554504088034,0,0,0.534880391567015,0.144824403882799,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0.522389211897802,0.132957960518865,0,0,0.371457501329565,1.19257444420023,0.860234595106124,0,1.69592382577203,0,0.825354125820202,0.417989933073621,0.258416759169329,0.71153252537342,0,0.402829317109147,0,0.488124115096339,0.735326160691737,0.81014194788176,0.357198913136319,0.22452937262617,0.225222960966644,0,0,1.28241220751285,1.31780417436063,7.75560528296651,0,0.496971951695318,0,0.264818361626438,0.286836620748814,0,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0.292311015483596,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0.269662616320329,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,1.44331342025273,0,0,1.01056513432752,0.462985512576611,0.380508304469197,0,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0,0.141775097242386,0.179117045405697,0.290633938513962,0,4.43396914106349,0.528290604079356,0.414656231081544,0.288239906833923,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,1.04007436911366,0,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,1.50677127429638,0,0,0,0,0,0.410952645100767,0,0.224170287987055,0.985153801009636,0.215627574859517,0.385029108839245,0.254094624222463,0,0,0,0,3.74503511973591,8.97484377612075,2.90090859405225,0,0,0,0,0.178428988797162,0,0,0,0,0,0.664225598535437,0.184369168541703,0.0868836144680828,0,0,1.24060815673732,0.647142602455851,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0.116210378459959,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0.850468526382578,0.431831832204279,0,0,0,0,0,0,0.219259876645935,0.784306353074702,0,0,0,0,0.0915694648183434,0.247528499761764,0,0,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0,0.255679882248303,0.0890320356467374,0.330569830721956,0.192190067365106,0,0,0,0,0,0.924100740528266,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0.608731130888112,0,0.281695602532241,0.143411352204052,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0.443430153536676,0,1.01489521846434,1.52927441428475,0.569647187174163,0.714695326373367,2.05681136543097,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0.557409525377156,0,0,0,0.199579371432817,1.53204296105893,1.05836791361941,0,0.561594356226918,0.684704037099577,0.156679895773023,0,1.01575066680962,0.481764225311099,0.403599414382095,0,0.343505344755765,0.921722292925374,0.223676107892416,0.333698283423817,0,0,0,3.2454681417118,0.33307196799782,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0.398495976502139,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,0,0.784901281975124,0.498635045700469,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0,0,0,0,0.593042257361244,1.35920332841153,0.835375596043643,0,0.802577647298789,0,0.182454789215666,0,0,0,0,0,0.252746318513952,0.300646838828985,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0.264768380074501,0.225980740780532,0,0.19871461170299,0.0633107959558787,0,0,0,0,0,0,0.171594997861965,0,0.124252535565433,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0.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| |||
|short_description=p6@USP4 | |||
}} |
Revision as of 18:54, 21 January 2014
Short description: | p6@USP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_USP4_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 45bp_to_ENST00000486549_5end |
EntrezGene: | USP4 |
HGNC: | 12627 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.13e-81 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.13e-81 | 42 |
defensive cell | 3.12e-74 | 48 |
phagocyte | 3.12e-74 | 48 |
myeloid leukocyte | 2.30e-70 | 72 |
monopoietic cell | 1.15e-57 | 59 |
monocyte | 1.15e-57 | 59 |
monoblast | 1.15e-57 | 59 |
promonocyte | 1.15e-57 | 59 |
macrophage dendritic cell progenitor | 1.58e-55 | 61 |
myeloid lineage restricted progenitor cell | 2.72e-54 | 66 |
myeloid cell | 3.65e-54 | 108 |
common myeloid progenitor | 3.65e-54 | 108 |
granulocyte monocyte progenitor cell | 2.30e-53 | 67 |
leukocyte | 8.69e-35 | 136 |
hematopoietic oligopotent progenitor cell | 5.01e-33 | 161 |
hematopoietic multipotent progenitor cell | 5.01e-33 | 161 |
hematopoietic stem cell | 6.26e-33 | 168 |
hematopoietic cell | 2.09e-32 | 177 |
nongranular leukocyte | 1.63e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 3.62e-26 | 120 |
granulocyte | 5.96e-16 | 8 |
neutrophil | 4.67e-12 | 3 |
mesenchymal cell | 1.05e-11 | 354 |
blood cell | 2.08e-11 | 11 |
connective tissue cell | 2.85e-11 | 361 |
motile cell | 9.47e-10 | 386 |
multi fate stem cell | 1.63e-08 | 427 |
eosinophil | 2.68e-08 | 2 |
somatic stem cell | 3.00e-08 | 433 |
stem cell | 6.62e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.12e-51 | 98 |
blood island | 3.12e-51 | 98 |
hemolymphoid system | 4.91e-48 | 108 |
bone marrow | 4.23e-46 | 76 |
immune system | 1.81e-43 | 93 |
bone element | 3.92e-42 | 82 |
skeletal element | 1.17e-37 | 90 |
skeletal system | 4.56e-33 | 100 |
lateral plate mesoderm | 5.15e-25 | 203 |
musculoskeletal system | 1.83e-16 | 167 |
mesoderm | 1.88e-12 | 315 |
mesoderm-derived structure | 1.88e-12 | 315 |
presumptive mesoderm | 1.88e-12 | 315 |
connective tissue | 1.11e-10 | 371 |