FFCP PHASE1:Hg19::chr10:106006616..106006632,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:106006616..106006632,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr10:106006616..106006632,- | |description=CAGE_peak_at_chr10:106006616..106006632,- | ||
|id=chr10:106006616..106006632,- | |id=chr10:106006616..106006632,- | ||
|ontology_enrichment_celltype=CL:0002057!6.41e-125!42;CL:0000860!5.06e-116!45;CL:0002194!3.95e-88!63;CL:0000576!3.95e-88!63;CL:0000040!3.95e-88!63;CL:0000559!3.95e-88!63;CL:0002009!3.43e-85!65;CL:0000766!3.25e-84!76;CL:0000839!1.44e-78!70;CL:0000557!2.35e-77!71;CL:0000763!1.85e-54!112;CL:0000049!1.85e-54!112;CL:0002087!5.48e-48!119;CL:0000738!1.55e-46!140;CL:0002031!8.65e-41!124;CL:0000037!3.51e-36!172;CL:0000566!3.51e-36!172;CL:0002032!4.08e-34!165;CL:0000837!4.08e-34!165;CL:0000988!1.10e-33!182;CL:0002393!2.19e-26!9;CL:0002397!2.19e-26!9;CL:0000134!2.97e-15!358;CL:0002320!9.00e-15!365;CL:0000219!4.48e-13!390;CL:0000767!1.18e-12!3;CL:0000034!3.50e-11!444;CL:0000048!4.83e-11!430;CL:0000723!9.39e-11!436 | |ontology_enrichment_celltype=CL:0002057!6.41e-125!42;CL:0000860!5.06e-116!45;CL:0002194!3.95e-88!63;CL:0000576!3.95e-88!63;CL:0000040!3.95e-88!63;CL:0000559!3.95e-88!63;CL:0002009!3.43e-85!65;CL:0000766!3.25e-84!76;CL:0000839!1.44e-78!70;CL:0000557!2.35e-77!71;CL:0000763!1.85e-54!112;CL:0000049!1.85e-54!112;CL:0002087!5.48e-48!119;CL:0000738!1.55e-46!140;CL:0002031!8.65e-41!124;CL:0000037!3.51e-36!172;CL:0000566!3.51e-36!172;CL:0002032!4.08e-34!165;CL:0000837!4.08e-34!165;CL:0000988!1.10e-33!182;CL:0002393!2.19e-26!9;CL:0002397!2.19e-26!9;CL:0000134!2.97e-15!358;CL:0002320!9.00e-15!365;CL:0000219!4.48e-13!390;CL:0000767!1.18e-12!3;CL:0000034!3.50e-11!444;CL:0000048!4.83e-11!430;CL:0000723!9.39e-11!436 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.91e-99;33!CL:0002057;1.91e-99;33!CL:0000473;1.41e-73;39!CL:0000234;1.41e-73;39!CL:0000576;1.52e-54;48!CL:0000766;2.49e-41;69!CL:0000767;1.00e-17;3!CL:0000763;3.18e-17;100!CL:0002087;5.04e-16;104!CL:0000738;8.11e-10;136!CL:0002393;2.96e-09;6!CL:0002397;2.96e-09;6!CL:0000094;5.81e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.95e-106,42;CL:0002057,2.95e-106,42;CL:0000473,4.53e-99,48;CL:0000234,4.53e-99,48;CL:0002194,3.38e-78,59;CL:0000576,3.38e-78,59;CL:0000040,3.38e-78,59;CL:0000559,3.38e-78,59;CL:0000766,9.85e-78,72;CL:0002009,1.67e-75,61;CL:0000839,1.80e-69,66;CL:0000557,2.27e-68,67;CL:0000763,3.12e-50,108;CL:0000049,3.12e-50,108;CL:0000738,1.49e-41,136;CL:0002087,9.88e-41,115;CL:0002031,4.79e-36,120;CL:0000037,1.32e-32,168;CL:0002032,5.94e-32,161;CL:0000837,5.94e-32,161;CL:0000988,1.14e-30,177;CL:0000767,9.20e-18,3;CL:0000134,1.93e-12,354;CL:0002320,4.39e-12,361;CL:0000219,7.98e-11,386;CL:0000034,1.16e-09,441;CL:0000048,2.80e-09,427;CL:0000723,4.57e-09,433;CL:0000094,5.63e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.60e-79;42!CL:0000049;1.60e-12;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.91e-68!80;UBERON:0001474!1.72e-62!86;UBERON:0002390!2.06e-57!102;UBERON:0003061!2.06e-57!102;UBERON:0004765!5.39e-52!101;UBERON:0001434!5.39e-52!101;UBERON:0002193!1.59e-51!112;UBERON:0002405!1.21e-44!115;UBERON:0002204!9.31e-30!167;UBERON:0003081!1.95e-22!216;UBERON:0002384!4.08e-14!375;UBERON:0000926!1.23e-08!448;UBERON:0004120!1.23e-08!448;UBERON:0006603!1.23e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.44e-60,76;UBERON:0001474,4.83e-55,82;UBERON:0004765,9.96e-50,90;UBERON:0002390,1.13e-48,98;UBERON:0003061,1.13e-48,98;UBERON:0002405,5.74e-48,93;UBERON:0001434,2.88e-44,100;UBERON:0002193,1.06e-43,108;UBERON:0002204,2.05e-24,167;UBERON:0003081,9.77e-21,203;UBERON:0002384,1.35e-11,371;UBERON:0000926,2.43e-11,315;UBERON:0004120,2.43e-11,315;UBERON:0006603,2.43e-11,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32700704533794,1.91914699048606,1.85779347979291,0,0,0,0,0,0,2.21598163412751,4.61252229181326,2.17010870715852,0,0,0,0.726991193897824,1.13362783106643,0,4.64858073811369,3.70051099219643,8.3620720141678,4.60307827715441,6.14785695669842,11.1146648047635,15.8583013138845,17.4280864567633,25.7310324529249,2.82363509313907,3.27487380069415,4.26974620445661,27.8536342057521,17.6510964891852,26.8521592835597,0.329851300186716,0.398927315243264,0,10.447532590629,4.53908179752912,3.11411124497787,3.76872997885115,2.60741459210101,12.1625753034865,6.65939452896706,6.2607198117886,9.17740923578565,0.845021145247767,0.425208599930087,0.838634582033504,0.22465726229299,0,0,0.570025487482497,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.5885704098234,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32700704533794,1.91914699048606,1.85779347979291,0,0,0,0,0,0,2.21598163412751,4.61252229181326,2.17010870715852,0,0,0,0.726991193897824,1.13362783106643,0,4.64858073811369,3.70051099219643,8.3620720141678,4.60307827715441,6.14785695669842,11.1146648047635,15.8583013138845,17.4280864567633,25.7310324529249,2.82363509313907,3.27487380069415,4.26974620445661,27.8536342057521,17.6510964891852,26.8521592835597,0.329851300186716,0.398927315243264,0,10.447532590629,4.53908179752912,3.11411124497787,3.76872997885115,2.60741459210101,12.1625753034865,6.65939452896706,6.2607198117886,9.17740923578565,0.845021145247767,0.425208599930087,0.838634582033504,0.22465726229299,0,0,0.570025487482497,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.5885704098234,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:106006616..106006632,- | |short_description=p@chr10:106006616..106006632,- | ||
}} | }} |
Latest revision as of 10:07, 23 July 2015
Short description: | p@chr10:106006616..106006632, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:106006616..106006632, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.95e-106 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.95e-106 | 42 |
defensive cell | 4.53e-99 | 48 |
phagocyte | 4.53e-99 | 48 |
monopoietic cell | 3.38e-78 | 59 |
monocyte | 3.38e-78 | 59 |
monoblast | 3.38e-78 | 59 |
promonocyte | 3.38e-78 | 59 |
myeloid leukocyte | 9.85e-78 | 72 |
macrophage dendritic cell progenitor | 1.67e-75 | 61 |
myeloid lineage restricted progenitor cell | 1.80e-69 | 66 |
granulocyte monocyte progenitor cell | 2.27e-68 | 67 |
myeloid cell | 3.12e-50 | 108 |
common myeloid progenitor | 3.12e-50 | 108 |
leukocyte | 1.49e-41 | 136 |
nongranular leukocyte | 9.88e-41 | 115 |
hematopoietic lineage restricted progenitor cell | 4.79e-36 | 120 |
hematopoietic stem cell | 1.32e-32 | 168 |
hematopoietic oligopotent progenitor cell | 5.94e-32 | 161 |
hematopoietic multipotent progenitor cell | 5.94e-32 | 161 |
hematopoietic cell | 1.14e-30 | 177 |
basophil | 9.20e-18 | 3 |
mesenchymal cell | 1.93e-12 | 354 |
connective tissue cell | 4.39e-12 | 361 |
motile cell | 7.98e-11 | 386 |
stem cell | 1.16e-09 | 441 |
multi fate stem cell | 2.80e-09 | 427 |
somatic stem cell | 4.57e-09 | 433 |
granulocyte | 5.63e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.44e-60 | 76 |
bone element | 4.83e-55 | 82 |
skeletal element | 9.96e-50 | 90 |
hematopoietic system | 1.13e-48 | 98 |
blood island | 1.13e-48 | 98 |
immune system | 5.74e-48 | 93 |
skeletal system | 2.88e-44 | 100 |
hemolymphoid system | 1.06e-43 | 108 |
musculoskeletal system | 2.05e-24 | 167 |
lateral plate mesoderm | 9.77e-21 | 203 |
connective tissue | 1.35e-11 | 371 |
mesoderm | 2.43e-11 | 315 |
mesoderm-derived structure | 2.43e-11 | 315 |
presumptive mesoderm | 2.43e-11 | 315 |