FFCP PHASE1:Hg19::chr12:28186158..28186183,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:28186158..28186183,- | |||
|coexpression_cluster_id=C195 | |coexpression_cluster_id=C195 | ||
|description=CAGE_peak_at_chr12:28186158..28186183,- | |description=CAGE_peak_at_chr12:28186158..28186183,- | ||
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|ontology_enrichment_celltype=CL:0002076!5.29e-46!43;CL:0002368!1.15e-36!13;CL:0000223!1.94e-32!59;CL:0002202!2.13e-24!9;CL:0002632!2.13e-24!9;CL:0002251!3.41e-21!21;CL:0002328!1.99e-19!3;CL:0000068!3.25e-19!3;CL:0000069!3.25e-19!3;CL:0000307!3.25e-19!3;CL:0000377!3.25e-19!3;CL:0002621!2.37e-18!3;CL:0000066!1.64e-15!254;CL:0000244!2.17e-14!4;CL:0000731!2.17e-14!4;CL:0002327!7.91e-14!4;CL:0002336!1.97e-07!1;CL:0002261!1.97e-07!1;CL:0002170!1.97e-07!1;CL:0000220!4.46e-07!246;CL:0002321!5.52e-07!248 | |ontology_enrichment_celltype=CL:0002076!5.29e-46!43;CL:0002368!1.15e-36!13;CL:0000223!1.94e-32!59;CL:0002202!2.13e-24!9;CL:0002632!2.13e-24!9;CL:0002251!3.41e-21!21;CL:0002328!1.99e-19!3;CL:0000068!3.25e-19!3;CL:0000069!3.25e-19!3;CL:0000307!3.25e-19!3;CL:0000377!3.25e-19!3;CL:0002621!2.37e-18!3;CL:0000066!1.64e-15!254;CL:0000244!2.17e-14!4;CL:0000731!2.17e-14!4;CL:0002327!7.91e-14!4;CL:0002336!1.97e-07!1;CL:0002261!1.97e-07!1;CL:0002170!1.97e-07!1;CL:0000220!4.46e-07!246;CL:0002321!5.52e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0000307;3.75e-53;3!CL:0002368;5.57e-49;13!CL:0002202;5.31e-40;9!CL:0002632;5.31e-40;9!CL:0002328;1.71e-14;3!CL:0000244;3.26e-11;4!CL:0000731;3.26e-11;4!CL:0002076;1.66e-09;42 | |ontology_enrichment_celltype_v019=CL:0000307;3.75e-53;3!CL:0002368;5.57e-49;13!CL:0002202;5.31e-40;9!CL:0002632;5.31e-40;9!CL:0002328;1.71e-14;3!CL:0000244;3.26e-11;4!CL:0000731;3.26e-11;4!CL:0002076;1.66e-09;42 | ||
|ontology_enrichment_celltype_v019_2=CL:0000068,6.39e-53,3;CL:0000069,6.39e-53,3;CL:0000307,6.39e-53,3;CL:0000377,6.39e-53,3;CL:0002368,6.71e-49,13;CL:0002202,6.49e-40,9;CL:0002632,6.49e-40,9;CL:0002076,9.75e-16,42;CL:0002328,1.60e-14,3;CL:0000223,1.35e-11,58;CL:0000244,2.80e-11,4;CL:0000731,2.80e-11,4 | |||
|ontology_enrichment_development_v019=CL:0000377;3.75e-53;3!CL:0000223;8.66e-11;58 | |ontology_enrichment_development_v019=CL:0000377;3.75e-53;3!CL:0000223;8.66e-11;58 | ||
|ontology_enrichment_disease=DOID:1749!2.56e-14!14 | |ontology_enrichment_disease=DOID:1749!2.56e-14!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p@chr12:28186158..28186183,- | |short_description=p@chr12:28186158..28186183,- | ||
}} | }} |
Latest revision as of 07:56, 24 July 2015
Short description: | p@chr12:28186158..28186183, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:28186158..28186183, - |
Coexpression cluster: | C195_Small_Gingival_Bronchial_Smooth_mesenchymal_Urothelial_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 6.39e-53 | 3 |
branched duct epithelial cell | 6.39e-53 | 3 |
tracheal epithelial cell | 6.39e-53 | 3 |
tracheoblast | 6.39e-53 | 3 |
respiratory epithelial cell | 6.71e-49 | 13 |
epithelial cell of tracheobronchial tree | 6.49e-40 | 9 |
epithelial cell of lower respiratory tract | 6.49e-40 | 9 |
endo-epithelial cell | 9.75e-16 | 42 |
bronchial epithelial cell | 1.60e-14 | 3 |
endodermal cell | 1.35e-11 | 58 |
transitional epithelial cell | 2.80e-11 | 4 |
urothelial cell | 2.80e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 2.27e-24 | 15 |
lower respiratory tract | 2.27e-24 | 15 |
trachea | 2.02e-23 | 7 |
respiratory airway | 2.02e-23 | 7 |
lower respiratory tract epithelium | 1.60e-14 | 3 |
epithelium of bronchus | 1.60e-14 | 3 |
respiratory tract | 2.11e-12 | 54 |
thoracic cavity element | 2.96e-11 | 34 |
thoracic cavity | 2.96e-11 | 34 |
thoracic segment organ | 5.87e-11 | 35 |
respiratory primordium | 3.72e-10 | 38 |
endoderm of foregut | 3.72e-10 | 38 |
urothelium | 2.74e-09 | 5 |
bronchus | 2.97e-09 | 5 |
respiratory system | 3.13e-09 | 74 |
segment of respiratory tract | 2.33e-08 | 47 |
transitional epithelium | 5.92e-08 | 6 |
thoracic segment of trunk | 1.26e-07 | 52 |
endoderm-derived structure | 9.48e-07 | 160 |
endoderm | 9.48e-07 | 160 |
presumptive endoderm | 9.48e-07 | 160 |