FFCP PHASE1:Hg19::chr12:65362955..65362961,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:65362955..65362961,- | |||
|coexpression_cluster_id=C186 | |coexpression_cluster_id=C186 | ||
|description=CAGE_peak_at_chr12:65362955..65362961,- | |description=CAGE_peak_at_chr12:65362955..65362961,- | ||
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|ontology_enrichment_celltype=CL:0000066!7.19e-18!254;CL:0002368!1.05e-12!13;CL:0000076!1.71e-11!62;CL:0000223!7.38e-10!59;CL:0002076!1.45e-09!43;CL:0000220!3.27e-09!246;CL:0002321!5.33e-09!248;CL:0002202!1.28e-08!9;CL:0002632!1.28e-08!9;CL:0000548!1.96e-07!679;CL:0000004!1.96e-07!679;CL:0000255!1.96e-07!679;CL:0000012!3.03e-07!682 | |ontology_enrichment_celltype=CL:0000066!7.19e-18!254;CL:0002368!1.05e-12!13;CL:0000076!1.71e-11!62;CL:0000223!7.38e-10!59;CL:0002076!1.45e-09!43;CL:0000220!3.27e-09!246;CL:0002321!5.33e-09!248;CL:0002202!1.28e-08!9;CL:0002632!1.28e-08!9;CL:0000548!1.96e-07!679;CL:0000004!1.96e-07!679;CL:0000255!1.96e-07!679;CL:0000012!3.03e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0002202;1.30e-23;9!CL:0002632;1.30e-23;9!CL:0002368;5.46e-22;13!CL:0000307;6.50e-19;3!CL:0000317;4.66e-13;2!CL:1000448;4.66e-13;2!CL:0002308;4.66e-13;2!CL:0002140;4.66e-13;2!CL:0002076;4.71e-09;42!CL:0002328;4.88e-09;3!CL:0002336;3.96e-07;1!CL:0002261;3.96e-07;1!CL:0002170;3.96e-07;1 | |ontology_enrichment_celltype_v019=CL:0002202;1.30e-23;9!CL:0002632;1.30e-23;9!CL:0002368;5.46e-22;13!CL:0000307;6.50e-19;3!CL:0000317;4.66e-13;2!CL:1000448;4.66e-13;2!CL:0002308;4.66e-13;2!CL:0002140;4.66e-13;2!CL:0002076;4.71e-09;42!CL:0002328;4.88e-09;3!CL:0002336;3.96e-07;1!CL:0002261;3.96e-07;1!CL:0002170;3.96e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.62e-23,9;CL:0002632,1.62e-23,9;CL:0002368,6.23e-22,13;CL:0000068,5.29e-19,3;CL:0000069,5.29e-19,3;CL:0000307,5.29e-19,3;CL:0000377,5.29e-19,3;CL:0000317,4.97e-13,2;CL:1000448,4.97e-13,2;CL:0002308,4.97e-13,2;CL:0002140,4.97e-13,2;CL:0002076,2.18e-12,42;CL:0002328,4.60e-09,3;CL:0000066,1.44e-08,253;CL:0000223,1.73e-08,58;CL:0000076,1.14e-07,63;CL:0002336,6.97e-07,1;CL:0002261,6.97e-07,1;CL:0002170,6.97e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;6.50e-19;3 | |ontology_enrichment_development_v019=CL:0000377;6.50e-19;3 | ||
|ontology_enrichment_disease=DOID:14566!3.20e-17!239;DOID:0050687!4.14e-17!143;DOID:162!5.40e-16!235;DOID:305!1.69e-14!106;DOID:1749!2.33e-11!14 | |ontology_enrichment_disease=DOID:14566!3.20e-17!239;DOID:0050687!4.14e-17!143;DOID:162!5.40e-16!235;DOID:305!1.69e-14!106;DOID:1749!2.33e-11!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;6.24e-15;14 | |ontology_enrichment_disease_v019=DOID:1749;6.24e-15;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,4.83e-15,14 | |||
|ontology_enrichment_uberon=UBERON:0000065!3.13e-07!53 | |ontology_enrichment_uberon=UBERON:0000065!3.13e-07!53 | ||
|ontology_enrichment_uberon_v019=UBERON:0007196;5.85e-14;15!UBERON:0001558;5.85e-14;15!UBERON:0002419;4.66e-13;2!UBERON:0007771;4.66e-13;2!UBERON:0003297;4.66e-13;2!UBERON:0001821;4.66e-13;2!UBERON:0003487;4.66e-13;2!UBERON:0001820;4.66e-13;2!UBERON:0004815;4.88e-09;3!UBERON:0002031;4.88e-09;3!UBERON:0003126;2.18e-08;7!UBERON:0001005;2.18e-08;7!UBERON:0005178;1.44e-07;34!UBERON:0002224;1.44e-07;34!UBERON:0007195;3.96e-07;1!UBERON:0004913;3.96e-07;1!UBERON:0003703;3.96e-07;1!UBERON:0001174;3.96e-07;1!UBERON:0004914;3.96e-07;1!UBERON:0003343;6.88e-07;4!UBERON:0004785;6.88e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0007196;5.85e-14;15!UBERON:0001558;5.85e-14;15!UBERON:0002419;4.66e-13;2!UBERON:0007771;4.66e-13;2!UBERON:0003297;4.66e-13;2!UBERON:0001821;4.66e-13;2!UBERON:0003487;4.66e-13;2!UBERON:0001820;4.66e-13;2!UBERON:0004815;4.88e-09;3!UBERON:0002031;4.88e-09;3!UBERON:0003126;2.18e-08;7!UBERON:0001005;2.18e-08;7!UBERON:0005178;1.44e-07;34!UBERON:0002224;1.44e-07;34!UBERON:0007195;3.96e-07;1!UBERON:0004913;3.96e-07;1!UBERON:0003703;3.96e-07;1!UBERON:0001174;3.96e-07;1!UBERON:0004914;3.96e-07;1!UBERON:0003343;6.88e-07;4!UBERON:0004785;6.88e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007196,6.66e-14,15;UBERON:0001558,6.66e-14,15;UBERON:0002419,4.97e-13,2;UBERON:0007771,4.97e-13,2;UBERON:0003297,4.97e-13,2;UBERON:0001821,4.97e-13,2;UBERON:0003487,4.97e-13,2;UBERON:0001820,4.97e-13,2;UBERON:0005089,4.97e-13,2;UBERON:0005088,4.97e-13,2;UBERON:0004815,4.60e-09,3;UBERON:0002031,4.60e-09,3;UBERON:0003126,2.00e-08,7;UBERON:0001005,2.00e-08,7;UBERON:0005178,9.28e-08,34;UBERON:0002224,9.28e-08,34;UBERON:0005181,1.64e-07,35;UBERON:0000065,1.80e-07,54;UBERON:0007195,5.19e-07,1;UBERON:0004913,6.57e-07,1;UBERON:0003703,6.57e-07,1;UBERON:0001174,6.57e-07,1;UBERON:0004914,6.57e-07,1;UBERON:0000072,6.59e-07,47;UBERON:0008947,7.52e-07,38;UBERON:0003258,7.52e-07,38;UBERON:0003343,8.34e-07,4;UBERON:0004785,8.34e-07,4 | |||
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| ||
|short_description=p@chr12:65362955..65362961,- | |short_description=p@chr12:65362955..65362961,- | ||
}} | }} |
Latest revision as of 11:21, 24 July 2015
Short description: | p@chr12:65362955..65362961, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:65362955..65362961, - |
Coexpression cluster: | C186_squamous_papillotubular_large_Tracheal_oral_Small_epidermoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.62e-23 | 9 |
epithelial cell of lower respiratory tract | 1.62e-23 | 9 |
respiratory epithelial cell | 6.23e-22 | 13 |
duct epithelial cell | 5.29e-19 | 3 |
branched duct epithelial cell | 5.29e-19 | 3 |
tracheal epithelial cell | 5.29e-19 | 3 |
tracheoblast | 5.29e-19 | 3 |
sebum secreting cell | 4.97e-13 | 2 |
epithelial cell of sweat gland | 4.97e-13 | 2 |
epithelial cell of skin gland | 4.97e-13 | 2 |
acinar cell of sebaceous gland | 4.97e-13 | 2 |
endo-epithelial cell | 2.18e-12 | 42 |
bronchial epithelial cell | 4.60e-09 | 3 |
epithelial cell | 1.44e-08 | 253 |
endodermal cell | 1.73e-08 | 58 |
squamous epithelial cell | 1.14e-07 | 63 |
buccal mucosa cell | 6.97e-07 | 1 |
endothelial cell of viscerocranial mucosa | 6.97e-07 | 1 |
keratinized cell of the oral mucosa | 6.97e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 6.66e-14 | 15 |
lower respiratory tract | 6.66e-14 | 15 |
skin gland | 4.97e-13 | 2 |
epidermis gland | 4.97e-13 | 2 |
gland of integumental system | 4.97e-13 | 2 |
sebaceous gland | 4.97e-13 | 2 |
skin sebaceous gland | 4.97e-13 | 2 |
sweat gland | 4.97e-13 | 2 |
sweat gland placode | 4.97e-13 | 2 |
sebaceous gland placode | 4.97e-13 | 2 |
lower respiratory tract epithelium | 4.60e-09 | 3 |
epithelium of bronchus | 4.60e-09 | 3 |
trachea | 2.00e-08 | 7 |
respiratory airway | 2.00e-08 | 7 |
thoracic cavity element | 9.28e-08 | 34 |
thoracic cavity | 9.28e-08 | 34 |
thoracic segment organ | 1.64e-07 | 35 |
respiratory tract | 1.80e-07 | 54 |
stroma of bone marrow | 5.19e-07 | 1 |
hepatopancreatic ampulla | 6.57e-07 | 1 |
extrahepatic bile duct | 6.57e-07 | 1 |
common bile duct | 6.57e-07 | 1 |
duodenal papilla | 6.57e-07 | 1 |
segment of respiratory tract | 6.59e-07 | 47 |
respiratory primordium | 7.52e-07 | 38 |
endoderm of foregut | 7.52e-07 | 38 |
mucosa of oral region | 8.34e-07 | 4 |
respiratory system mucosa | 8.34e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.83e-15 | 14 |