FFCP PHASE1:Hg19::chr13:23500789..23500796,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr13:23500789..23500796,+
|short_description=p@chr13:23500789..23500796,+
|description=CAGE_peak_at_chr13:23500789..23500796,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:23500789..23500796,+ | |||
|coexpression_cluster_id=C262 | |||
|description=CAGE_peak_at_chr13:23500789..23500796,+ | |||
|id=chr13:23500789..23500796,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.16e-10!5;CL:0001014!9.24e-08!2;CL:0001016!9.24e-08!2;CL:0000242!1.33e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0001014;2.19e-12;2!CL:0001016;2.19e-12;2!CL:0000123;3.06e-12;2!CL:0000650;3.06e-12;2!CL:1000500;3.06e-12;2!CL:1000618;3.06e-12;2!CL:1001318;3.06e-12;2!CL:0002173;3.06e-12;2!CL:0000242;3.06e-12;2!CL:0000322;1.08e-08;3!CL:0000669;9.36e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,2.07e-12,2;CL:0001016,2.07e-12,2;CL:0000242,2.59e-12,2;CL:0000650,3.62e-12,2;CL:1000500,3.62e-12,2;CL:1000618,3.62e-12,2;CL:1001318,3.62e-12,2;CL:0002173,3.62e-12,2;CL:0000322,1.12e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5093!8.18e-09!4;DOID:1612!8.18e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.59e-50;4!DOID:1612;1.59e-50;4!DOID:3910;2.19e-12;2!DOID:299;1.06e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.59e-50,4;DOID:1612,1.59e-50,4;DOID:3910,2.32e-12,2;DOID:299,1.06e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0003135!3.37e-07!11;UBERON:0000058!5.97e-07!26;UBERON:0003887!8.60e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000310;9.82e-21;10!UBERON:0001443;6.40e-19;11!UBERON:0004903;2.19e-12;2!UBERON:0002173;2.19e-12;2!UBERON:0002186;2.19e-12;2!UBERON:0003567;3.06e-12;2!UBERON:0003838;3.06e-12;2!UBERON:0003586;3.06e-12;2!UBERON:0005169;3.06e-12;2!UBERON:0002321;3.06e-12;2!UBERON:0005215;3.06e-12;2!UBERON:0002303;3.06e-12;2!UBERON:0002319;3.06e-12;2!UBERON:0004821;1.08e-08;3!UBERON:0007499;1.08e-08;3!UBERON:0003215;1.08e-08;3!UBERON:0010368;1.08e-08;3!UBERON:0009911;1.08e-08;3!UBERON:0002299;1.08e-08;3!UBERON:0006524;1.08e-08;3!UBERON:0008874;1.08e-08;3!UBERON:0002169;1.08e-08;3!UBERON:0004894;1.08e-08;3!UBERON:0009856;7.91e-07;4!UBERON:0003891;9.36e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,9.82e-21,10;UBERON:0001443,6.40e-19,11;UBERON:0004903,2.32e-12,2;UBERON:0002173,2.32e-12,2;UBERON:0002186,2.32e-12,2;UBERON:0003567,3.62e-12,2;UBERON:0003838,3.62e-12,2;UBERON:0003586,3.62e-12,2;UBERON:0005169,3.62e-12,2;UBERON:0002321,3.62e-12,2;UBERON:0005215,3.62e-12,2;UBERON:0002303,3.62e-12,2;UBERON:0002319,3.62e-12,2;UBERON:0004821,1.12e-08,3;UBERON:0003215,1.12e-08,3;UBERON:0010368,1.12e-08,3;UBERON:0009911,1.12e-08,3;UBERON:0002299,1.12e-08,3;UBERON:0006524,1.12e-08,3;UBERON:0008874,1.12e-08,3;UBERON:0002169,1.12e-08,3;UBERON:0004894,1.12e-08,3;UBERON:0000915,3.12e-07,52 | |||
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| ||
|short_description=p@chr13:23500789..23500796,+ | |||
}} | }} |
Latest revision as of 15:06, 24 July 2015
Short description: | p@chr13:23500789..23500796, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:23500789..23500796, + |
Coexpression cluster: | C262_breast_MCF7_skeletal_Reticulocytes_mucinous_hepatoblastoma_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 2.07e-12 | 2 |
immature CD1a-positive Langerhans cell | 2.07e-12 | 2 |
Merkel cell | 2.59e-12 | 2 |
mesangial cell | 3.62e-12 | 2 |
kidney interstitial cell | 3.62e-12 | 2 |
juxtaglomerular complex cell | 3.62e-12 | 2 |
renal interstitial pericyte | 3.62e-12 | 2 |
extraglomerular mesangial cell | 3.62e-12 | 2 |
pneumocyte | 1.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
breast | 9.82e-21 | 10 |
chest | 6.40e-19 | 11 |
bronchoalveolar duct junction | 2.32e-12 | 2 |
alveolar duct | 2.32e-12 | 2 |
bronchiole | 2.32e-12 | 2 |
abdomen connective tissue | 3.62e-12 | 2 |
abdominal segment connective tissue | 3.62e-12 | 2 |
trunk connective tissue | 3.62e-12 | 2 |
interstitial tissue | 3.62e-12 | 2 |
extraglomerular mesangium | 3.62e-12 | 2 |
kidney interstitium | 3.62e-12 | 2 |
juxtaglomerular apparatus | 3.62e-12 | 2 |
mesangium | 3.62e-12 | 2 |
pulmonary alveolus epithelium | 1.12e-08 | 3 |
alveolus | 1.12e-08 | 3 |
pulmonary lobule | 1.12e-08 | 3 |
lobule | 1.12e-08 | 3 |
alveolus of lung | 1.12e-08 | 3 |
alveolar system | 1.12e-08 | 3 |
pulmonary acinus | 1.12e-08 | 3 |
alveolar sac | 1.12e-08 | 3 |
alveolar wall | 1.12e-08 | 3 |
thoracic segment of trunk | 3.12e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.59e-50 | 4 |
breast cancer | 1.59e-50 | 4 |
lung adenocarcinoma | 2.32e-12 | 2 |
adenocarcinoma | 1.06e-08 | 25 |