FFCP PHASE1:Hg19::chr14:22958227..22958292,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001wek.2_5end | |association_with_transcript=0bp_to_uc001wek.2_5end | ||
|cluster_id=chr14:22958227..22958292,+ | |||
|description=CAGE_peak_1_at_uc001wek.2_5end | |description=CAGE_peak_1_at_uc001wek.2_5end | ||
|id=chr14:22958227..22958292,+ | |id=chr14:22958227..22958292,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.77e-24!53;CL:0000051!1.77e-24!53;CL:0000838!2.00e-23!52;CL:0000791!3.88e-14!18;CL:0000789!3.88e-14!18;CL:0002420!3.88e-14!18;CL:0002419!3.88e-14!18;CL:0000790!3.88e-14!18;CL:0000945!1.87e-11!24;CL:0000826!1.87e-11!24;CL:0002087!2.14e-10!119;CL:0000084!3.02e-10!25;CL:0000827!3.02e-10!25;CL:0000738!1.14e-09!140;CL:0000625!1.60e-08!11;CL:0002031!1.14e-07!124 | |ontology_enrichment_celltype=CL:0000542!1.77e-24!53;CL:0000051!1.77e-24!53;CL:0000838!2.00e-23!52;CL:0000791!3.88e-14!18;CL:0000789!3.88e-14!18;CL:0002420!3.88e-14!18;CL:0002419!3.88e-14!18;CL:0000790!3.88e-14!18;CL:0000945!1.87e-11!24;CL:0000826!1.87e-11!24;CL:0002087!2.14e-10!119;CL:0000084!3.02e-10!25;CL:0000827!3.02e-10!25;CL:0000738!1.14e-09!140;CL:0000625!1.60e-08!11;CL:0002031!1.14e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.24e-16;18!CL:0000789;2.24e-16;18!CL:0002419;2.24e-16;18!CL:0000542;6.33e-16;53!CL:0000945;9.20e-13;24!CL:0000624;2.90e-11;6!CL:0000084;3.90e-11;25!CL:0000623;4.79e-09;3!CL:0000898;6.43e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.65e-29,53;CL:0000051,1.65e-29,53;CL:0000838,1.11e-27,52;CL:0000791,4.60e-16,18;CL:0000789,4.60e-16,18;CL:0002420,4.60e-16,18;CL:0002419,4.60e-16,18;CL:0000790,4.60e-16,18;CL:0000945,6.75e-13,24;CL:0000826,6.75e-13,24;CL:0000624,4.14e-11,6;CL:0000084,6.39e-11,25;CL:0000827,6.39e-11,25;CL:0002087,7.64e-10,115;CL:0000623,5.38e-09,3;CL:0000825,5.38e-09,3;CL:0000898,5.53e-09,3;CL:0002031,2.76e-08,120;CL:0000738,2.07e-07,136;CL:0000893,5.90e-07,2;CL:0002489,5.90e-07,2;CL:0000809,5.90e-07,2;CL:0000808,5.90e-07,2;CL:0000894,5.90e-07,2;CL:0000806,5.90e-07,2;CL:0000807,5.90e-07,2;CL:0000805,5.90e-07,2;CL:0002425,5.90e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;2.24e-16;18!CL:0000051;6.33e-16;53!CL:0002425;6.62e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.47e-16!115;UBERON:0004177!5.26e-09!7;UBERON:0000178!2.21e-08!15;UBERON:0000179!2.21e-08!15;UBERON:0000463!2.21e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.75e-07;2!UBERON:0002757;1.75e-07;2!UBERON:0010134;1.75e-07;2!UBERON:0005408;1.75e-07;2!UBERON:0001899;1.75e-07;2!UBERON:0002370;5.80e-07;2!UBERON:0005058;5.80e-07;2!UBERON:0009113;5.80e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.05e-12,4;UBERON:0005058,3.05e-12,4;UBERON:0009113,3.05e-12,4;UBERON:0003295,3.05e-12,4;UBERON:0005562,3.05e-12,4;UBERON:0003351,3.71e-08,6;UBERON:0001905,1.76e-07,2;UBERON:0002757,1.76e-07,2;UBERON:0010134,1.76e-07,2;UBERON:0005408,1.76e-07,2;UBERON:0001899,1.76e-07,2;UBERON:0001042,4.78e-07,10;UBERON:0009145,4.78e-07,10;UBERON:0004177,5.50e-07,7;UBERON:0005057,5.50e-07,7 | |||
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| ||
|short_description=p1@uc001wek.2 | |short_description=p1@uc001wek.2 | ||
}} | }} |
Latest revision as of 19:13, 24 July 2015
Short description: | p1@uc001wek.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001wek.2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001wek.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.65e-29 | 53 |
common lymphoid progenitor | 1.65e-29 | 53 |
lymphoid lineage restricted progenitor cell | 1.11e-27 | 52 |
mature alpha-beta T cell | 4.60e-16 | 18 |
alpha-beta T cell | 4.60e-16 | 18 |
immature T cell | 4.60e-16 | 18 |
mature T cell | 4.60e-16 | 18 |
immature alpha-beta T cell | 4.60e-16 | 18 |
lymphocyte of B lineage | 6.75e-13 | 24 |
pro-B cell | 6.75e-13 | 24 |
CD4-positive, alpha-beta T cell | 4.14e-11 | 6 |
T cell | 6.39e-11 | 25 |
pro-T cell | 6.39e-11 | 25 |
nongranular leukocyte | 7.64e-10 | 115 |
natural killer cell | 5.38e-09 | 3 |
pro-NK cell | 5.38e-09 | 3 |
naive T cell | 5.53e-09 | 3 |
hematopoietic lineage restricted progenitor cell | 2.76e-08 | 120 |
leukocyte | 2.07e-07 | 136 |
thymocyte | 5.90e-07 | 2 |
double negative thymocyte | 5.90e-07 | 2 |
double-positive, alpha-beta thymocyte | 5.90e-07 | 2 |
DN4 thymocyte | 5.90e-07 | 2 |
DN1 thymic pro-T cell | 5.90e-07 | 2 |
DN2 thymocyte | 5.90e-07 | 2 |
DN3 thymocyte | 5.90e-07 | 2 |
immature single positive thymocyte | 5.90e-07 | 2 |
early T lineage precursor | 5.90e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.05e-12 | 4 |
hemolymphoid system gland | 3.05e-12 | 4 |
thymic region | 3.05e-12 | 4 |
pharyngeal gland | 3.05e-12 | 4 |
thymus primordium | 3.05e-12 | 4 |
pharyngeal epithelium | 3.71e-08 | 6 |
pineal body | 1.76e-07 | 2 |
regional part of epithalamus | 1.76e-07 | 2 |
secretory circumventricular organ | 1.76e-07 | 2 |
circumventricular organ | 1.76e-07 | 2 |
epithalamus | 1.76e-07 | 2 |
chordate pharynx | 4.78e-07 | 10 |
pharyngeal region of foregut | 4.78e-07 | 10 |
hemopoietic organ | 5.50e-07 | 7 |
immune organ | 5.50e-07 | 7 |