FFCP PHASE1:Hg19::chr17:37949241..37949253,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:37949241..37949253,- | |||
|coexpression_cluster_id=C144 | |||
|description=CAGE_peak_at_chr17:37949241..37949253,- | |description=CAGE_peak_at_chr17:37949241..37949253,- | ||
|id=chr17:37949241..37949253,- | |id=chr17:37949241..37949253,- | ||
|ontology_enrichment_celltype=CL:0000791!1.44e-29!18;CL:0000789!1.44e-29!18;CL:0002420!1.44e-29!18;CL:0002419!1.44e-29!18;CL:0000790!1.44e-29!18;CL:0000542!1.94e-27!53;CL:0000051!1.94e-27!53;CL:0000838!2.40e-25!52;CL:0000084!1.56e-20!25;CL:0000827!1.56e-20!25;CL:0000624!5.66e-17!6;CL:0000625!8.38e-17!11;CL:0000898!3.64e-13!3;CL:0002087!8.99e-13!119;CL:0000842!1.06e-11!3;CL:0000738!4.86e-10!140;CL:0000815!1.54e-09!2;CL:0000792!1.54e-09!2;CL:0002677!1.54e-09!2;CL:0000945!5.28e-09!24;CL:0000826!5.28e-09!24;CL:0000224!6.77e-09!4;CL:0002031!8.71e-08!124;CL:0000037!3.41e-07!172;CL:0000566!3.41e-07!172 | |ontology_enrichment_celltype=CL:0000791!1.44e-29!18;CL:0000789!1.44e-29!18;CL:0002420!1.44e-29!18;CL:0002419!1.44e-29!18;CL:0000790!1.44e-29!18;CL:0000542!1.94e-27!53;CL:0000051!1.94e-27!53;CL:0000838!2.40e-25!52;CL:0000084!1.56e-20!25;CL:0000827!1.56e-20!25;CL:0000624!5.66e-17!6;CL:0000625!8.38e-17!11;CL:0000898!3.64e-13!3;CL:0002087!8.99e-13!119;CL:0000842!1.06e-11!3;CL:0000738!4.86e-10!140;CL:0000815!1.54e-09!2;CL:0000792!1.54e-09!2;CL:0002677!1.54e-09!2;CL:0000945!5.28e-09!24;CL:0000826!5.28e-09!24;CL:0000224!6.77e-09!4;CL:0002031!8.71e-08!124;CL:0000037!3.41e-07!172;CL:0000566!3.41e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000815;1.29e-24;2!CL:0000792;1.29e-24;2!CL:0002677;1.29e-24;2!CL:0000624;3.52e-18;6!CL:0000898;9.26e-17;3!CL:0000791;4.31e-16;18!CL:0000789;4.31e-16;18!CL:0002419;4.31e-16;18!CL:0000785;4.23e-13;1!CL:0000819;4.23e-13;1!CL:0000084;1.41e-11;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,1.45e-24,2;CL:0000792,1.45e-24,2;CL:0002677,1.45e-24,2;CL:0000624,4.45e-18,6;CL:0000898,1.00e-16,3;CL:0000791,5.22e-16,18;CL:0000789,5.22e-16,18;CL:0002420,5.22e-16,18;CL:0002419,5.22e-16,18;CL:0000790,5.22e-16,18;CL:0000819,3.76e-13,1;CL:0000084,1.61e-11,25;CL:0000827,1.61e-11,25;CL:0000838,1.10e-07,52;CL:0000542,1.56e-07,53;CL:0000051,1.56e-07,53;CL:0000785,3.28e-07,2;CL:0000955,3.28e-07,2;CL:0000818,3.28e-07,2;CL:0000954,3.28e-07,2;CL:0000816,3.28e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;4.31e-16;18!CL:0000954;3.48e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060073;4.23e-13;1!DOID:8675;4.23e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,3.76e-13,1;DOID:8675,3.76e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!2.95e-15!15;UBERON:0000179!2.95e-15!15;UBERON:0000463!2.95e-15!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;7.68e-13;1!UBERON:0001961;7.68e-13;1!UBERON:0001744;7.68e-13;1!UBERON:0001042;7.68e-13;1!UBERON:0001735;7.68e-13;1!UBERON:0006562;4.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,6.82e-13,1;UBERON:0001961,6.82e-13,1;UBERON:0001744,6.82e-13,1;UBERON:0001735,6.82e-13,1 | |||
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| ||
|short_description=p@chr17:37949241..37949253,- | |short_description=p@chr17:37949241..37949253,- | ||
}} | }} |
Latest revision as of 16:14, 25 July 2015
Short description: | p@chr17:37949241..37949253, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:37949241..37949253, - |
Coexpression cluster: | C144_CD4_tonsil_NK_appendix_CD8_splenic_mycosis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 1.45e-24 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.45e-24 | 2 |
naive regulatory T cell | 1.45e-24 | 2 |
CD4-positive, alpha-beta T cell | 4.45e-18 | 6 |
naive T cell | 1.00e-16 | 3 |
mature alpha-beta T cell | 5.22e-16 | 18 |
alpha-beta T cell | 5.22e-16 | 18 |
immature T cell | 5.22e-16 | 18 |
mature T cell | 5.22e-16 | 18 |
immature alpha-beta T cell | 5.22e-16 | 18 |
B-1 B cell | 3.76e-13 | 1 |
T cell | 1.61e-11 | 25 |
pro-T cell | 1.61e-11 | 25 |
lymphoid lineage restricted progenitor cell | 1.10e-07 | 52 |
lymphocyte | 1.56e-07 | 53 |
common lymphoid progenitor | 1.56e-07 | 53 |
mature B cell | 3.28e-07 | 2 |
pre-B-II cell | 3.28e-07 | 2 |
transitional stage B cell | 3.28e-07 | 2 |
small pre-B-II cell | 3.28e-07 | 2 |
immature B cell | 3.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
tonsil | 6.82e-13 | 1 |
mucosa-associated lymphoid tissue | 6.82e-13 | 1 |
lymphoid tissue | 6.82e-13 | 1 |
tonsillar ring | 6.82e-13 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 3.76e-13 | 1 |
lymphosarcoma | 3.76e-13 | 1 |