FFCP PHASE1:Hg19::chr17:39777946..39777977,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:39777946..39777977,+ | |||
|coexpression_cluster_id=C1170 | |||
|description=CAGE_peak_at_chr17:39777946..39777977,+ | |description=CAGE_peak_at_chr17:39777946..39777977,+ | ||
|id=chr17:39777946..39777977,+ | |id=chr17:39777946..39777977,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.62e-32!254;CL:0002076!2.68e-29!43;CL:0000223!1.33e-22!59;CL:0002368!9.20e-21!13;CL:0002159!1.53e-13!13;CL:0002202!8.09e-13!9;CL:0002632!8.09e-13!9;CL:0002251!1.48e-12!21;CL:0000244!2.52e-10!4;CL:0000731!2.52e-10!4;CL:0002328!1.68e-08!3;CL:0000349!1.72e-08!3;CL:0002577!1.72e-08!3;CL:0000068!2.90e-08!3;CL:0000069!2.90e-08!3;CL:0000307!2.90e-08!3;CL:0000377!2.90e-08!3;CL:0002166!1.19e-07!3;CL:0002621!1.63e-07!3;CL:0000063!1.92e-07!578 | |ontology_enrichment_celltype=CL:0000066!2.62e-32!254;CL:0002076!2.68e-29!43;CL:0000223!1.33e-22!59;CL:0002368!9.20e-21!13;CL:0002159!1.53e-13!13;CL:0002202!8.09e-13!9;CL:0002632!8.09e-13!9;CL:0002251!1.48e-12!21;CL:0000244!2.52e-10!4;CL:0000731!2.52e-10!4;CL:0002328!1.68e-08!3;CL:0000349!1.72e-08!3;CL:0002577!1.72e-08!3;CL:0000068!2.90e-08!3;CL:0000069!2.90e-08!3;CL:0000307!2.90e-08!3;CL:0000377!2.90e-08!3;CL:0002166!1.19e-07!3;CL:0002621!1.63e-07!3;CL:0000063!1.92e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0002368;4.59e-31;13!CL:0002159;3.36e-22;14!CL:0002076;4.33e-20;42!CL:0000244;1.57e-17;4!CL:0000731;1.57e-17;4!CL:0002202;3.91e-17;9!CL:0002632;3.91e-17;9!CL:0002328;4.59e-14;3!CL:0002577;5.58e-14;3!CL:0000307;9.94e-14;3!CL:0002166;2.31e-12;3!CL:0000240;2.89e-11;6!CL:0000311;2.89e-11;6!CL:0000079;2.89e-11;6!CL:0000237;2.89e-11;6!CL:0002077;9.28e-11;34!CL:0002327;2.40e-10;4!CL:0000575;1.92e-09;2!CL:0000312;3.69e-08;5!CL:0000362;1.21e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,6.77e-31,13;CL:0002076,7.84e-25,42;CL:0000066,2.46e-24,253;CL:0002159,2.20e-22,14;CL:0000244,2.40e-17,4;CL:0000731,2.40e-17,4;CL:0002202,4.50e-17,9;CL:0002632,4.50e-17,9;CL:0000223,7.39e-17,58;CL:0002328,4.60e-14,3;CL:0002577,4.81e-14,3;CL:0000068,1.23e-13,3;CL:0000069,1.23e-13,3;CL:0000307,1.23e-13,3;CL:0000377,1.23e-13,3;CL:0002077,1.46e-12,34;CL:0002166,1.55e-12,3;CL:0000240,2.15e-11,6;CL:0000311,2.15e-11,6;CL:0000079,2.15e-11,6;CL:0000237,2.15e-11,6;CL:0000036,2.15e-11,6;CL:0000357,2.15e-11,6;CL:0000114,2.15e-11,6;CL:0002327,2.15e-10,4;CL:0000575,1.73e-09,2;CL:0000312,3.52e-08,5;CL:0000362,1.13e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;9.94e-14;3!CL:0000357;2.89e-11;6!CL:0000114;2.89e-11;6!CL:0000223;3.00e-10;58 | |||
|ontology_enrichment_disease=DOID:1749!2.33e-10!14;DOID:305!2.53e-10!106 | |ontology_enrichment_disease=DOID:1749!2.33e-10!14;DOID:305!2.53e-10!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!2.97e-23!72;UBERON:0000065!4.51e-20!53;UBERON:0004119!7.42e-19!169;UBERON:0000925!7.42e-19!169;UBERON:0006595!7.42e-19!169;UBERON:0001737!1.67e-18!9;UBERON:0000072!4.09e-16!46;UBERON:0008947!6.19e-15!38;UBERON:0003258!6.19e-15!38;UBERON:0001557!6.43e-14!19;UBERON:0000365!5.66e-12!5;UBERON:0000077!9.56e-11!130;UBERON:0001007!3.27e-10!155;UBERON:0001555!3.27e-10!155;UBERON:0007026!3.27e-10!155;UBERON:0005910!6.80e-10!6;UBERON:0007196!8.83e-10!14;UBERON:0001558!8.83e-10!14;UBERON:0001041!2.46e-09!98;UBERON:0005631!2.59e-09!14;UBERON:0000158!2.59e-09!14;UBERON:0000064!1.22e-08!219;UBERON:0004815!1.68e-08!3;UBERON:0002031!1.68e-08!3;UBERON:0000166!2.42e-08!21;UBERON:0004921!3.81e-08!129;UBERON:0004185!3.81e-08!129;UBERON:0000161!1.40e-07!35;UBERON:0001949!1.63e-07!3;UBERON:0000165!4.11e-07!28;UBERON:0000930!4.11e-07!28;UBERON:0003729!4.86e-07!5;UBERON:0001723!6.41e-07!3;UBERON:0001033!6.41e-07!3;UBERON:0010056!6.41e-07!3 | |ontology_enrichment_uberon=UBERON:0001004!2.97e-23!72;UBERON:0000065!4.51e-20!53;UBERON:0004119!7.42e-19!169;UBERON:0000925!7.42e-19!169;UBERON:0006595!7.42e-19!169;UBERON:0001737!1.67e-18!9;UBERON:0000072!4.09e-16!46;UBERON:0008947!6.19e-15!38;UBERON:0003258!6.19e-15!38;UBERON:0001557!6.43e-14!19;UBERON:0000365!5.66e-12!5;UBERON:0000077!9.56e-11!130;UBERON:0001007!3.27e-10!155;UBERON:0001555!3.27e-10!155;UBERON:0007026!3.27e-10!155;UBERON:0005910!6.80e-10!6;UBERON:0007196!8.83e-10!14;UBERON:0001558!8.83e-10!14;UBERON:0001041!2.46e-09!98;UBERON:0005631!2.59e-09!14;UBERON:0000158!2.59e-09!14;UBERON:0000064!1.22e-08!219;UBERON:0004815!1.68e-08!3;UBERON:0002031!1.68e-08!3;UBERON:0000166!2.42e-08!21;UBERON:0004921!3.81e-08!129;UBERON:0004185!3.81e-08!129;UBERON:0000161!1.40e-07!35;UBERON:0001949!1.63e-07!3;UBERON:0000165!4.11e-07!28;UBERON:0000930!4.11e-07!28;UBERON:0003729!4.86e-07!5;UBERON:0001723!6.41e-07!3;UBERON:0001033!6.41e-07!3;UBERON:0010056!6.41e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000065;4.97e-16;44!UBERON:0004815;4.59e-14;3!UBERON:0002031;4.59e-14;3!UBERON:0000365;4.81e-14;5!UBERON:0000072;1.52e-12;37!UBERON:0000486;4.06e-12;12!UBERON:0005910;1.03e-11;6!UBERON:0001737;1.03e-10;9!UBERON:0001557;1.03e-10;9!UBERON:0001987;1.36e-10;4!UBERON:0001911;2.40e-10;4!UBERON:0007196;5.28e-10;15!UBERON:0001558;5.28e-10;15!UBERON:0001708;2.15e-09;4!UBERON:0008895;2.15e-09;4!UBERON:0001004;2.22e-09;65!UBERON:0002185;1.33e-08;5!UBERON:0005911;2.20e-08;36!UBERON:0011159;1.32e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.01e-16,160;UBERON:0000925,4.01e-16,160;UBERON:0006595,4.01e-16,160;UBERON:0000065,1.12e-15,54;UBERON:0001004,2.29e-15,74;UBERON:0004815,4.60e-14,3;UBERON:0002031,4.60e-14,3;UBERON:0000365,6.72e-14,5;UBERON:0008947,4.87e-13,38;UBERON:0003258,4.87e-13,38;UBERON:0005910,1.35e-11,6;UBERON:0001987,1.22e-10,4;UBERON:0004340,1.22e-10,4;UBERON:0001737,1.77e-10,9;UBERON:0001911,2.15e-10,4;UBERON:0005333,2.15e-10,4;UBERON:0008425,2.15e-10,4;UBERON:0005311,2.15e-10,4;UBERON:0000072,4.58e-10,47;UBERON:0007196,5.73e-10,15;UBERON:0001558,5.73e-10,15;UBERON:0001708,1.59e-09,4;UBERON:0008895,1.59e-09,4;UBERON:0005157,9.02e-09,47;UBERON:0002185,1.33e-08,5;UBERON:0005153,8.49e-08,37;UBERON:0011159,1.04e-07,5;UBERON:0005631,2.05e-07,14;UBERON:0000158,2.05e-07,14;UBERON:0003102,5.28e-07,99;UBERON:0005178,6.79e-07,34;UBERON:0002224,6.79e-07,34 | |||
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| ||
|short_description=p@chr17:39777946..39777977,+ | |short_description=p@chr17:39777946..39777977,+ | ||
}} | }} |
Latest revision as of 16:46, 25 July 2015
Short description: | p@chr17:39777946..39777977, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39777946..39777977, + |
Coexpression cluster: | C1170_Placental_Bronchial_nasal_Esophageal_Urothelial_Corneal_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 6.77e-31 | 13 |
endo-epithelial cell | 7.84e-25 | 42 |
epithelial cell | 2.46e-24 | 253 |
general ecto-epithelial cell | 2.20e-22 | 14 |
transitional epithelial cell | 2.40e-17 | 4 |
urothelial cell | 2.40e-17 | 4 |
epithelial cell of tracheobronchial tree | 4.50e-17 | 9 |
epithelial cell of lower respiratory tract | 4.50e-17 | 9 |
endodermal cell | 7.39e-17 | 58 |
bronchial epithelial cell | 4.60e-14 | 3 |
placental epithelial cell | 4.81e-14 | 3 |
duct epithelial cell | 1.23e-13 | 3 |
branched duct epithelial cell | 1.23e-13 | 3 |
tracheal epithelial cell | 1.23e-13 | 3 |
tracheoblast | 1.23e-13 | 3 |
ecto-epithelial cell | 1.46e-12 | 34 |
epithelial cell of Malassez | 1.55e-12 | 3 |
stratified squamous epithelial cell | 2.15e-11 | 6 |
keratin accumulating cell | 2.15e-11 | 6 |
stratified epithelial cell | 2.15e-11 | 6 |
keratinizing barrier epithelial cell | 2.15e-11 | 6 |
epithelial fate stem cell | 2.15e-11 | 6 |
stratified epithelial stem cell | 2.15e-11 | 6 |
surface ectodermal cell | 2.15e-11 | 6 |
mammary gland epithelial cell | 2.15e-10 | 4 |
corneal epithelial cell | 1.73e-09 | 2 |
keratinocyte | 3.52e-08 | 5 |
epidermal cell | 1.13e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.01e-16 | 160 |
endoderm | 4.01e-16 | 160 |
presumptive endoderm | 4.01e-16 | 160 |
respiratory tract | 1.12e-15 | 54 |
respiratory system | 2.29e-15 | 74 |
lower respiratory tract epithelium | 4.60e-14 | 3 |
epithelium of bronchus | 4.60e-14 | 3 |
urothelium | 6.72e-14 | 5 |
respiratory primordium | 4.87e-13 | 38 |
endoderm of foregut | 4.87e-13 | 38 |
transitional epithelium | 1.35e-11 | 6 |
placenta | 1.22e-10 | 4 |
allantois | 1.22e-10 | 4 |
larynx | 1.77e-10 | 9 |
mammary gland | 2.15e-10 | 4 |
mammary bud | 2.15e-10 | 4 |
mammary ridge | 2.15e-10 | 4 |
mammary placode | 2.15e-10 | 4 |
segment of respiratory tract | 4.58e-10 | 47 |
tracheobronchial tree | 5.73e-10 | 15 |
lower respiratory tract | 5.73e-10 | 15 |
jaw skeleton | 1.59e-09 | 4 |
splanchnocranium | 1.59e-09 | 4 |
epithelial fold | 9.02e-09 | 47 |
bronchus | 1.33e-08 | 5 |
epithelial bud | 8.49e-08 | 37 |
primary subdivision of cranial skeletal system | 1.04e-07 | 5 |
extraembryonic membrane | 2.05e-07 | 14 |
membranous layer | 2.05e-07 | 14 |
surface structure | 5.28e-07 | 99 |
thoracic cavity element | 6.79e-07 | 34 |
thoracic cavity | 6.79e-07 | 34 |