FFCP PHASE1:Hg19::chr19:48343979..48343982,+: Difference between revisions
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|id=chr19:48343979..48343982,+
|short_description=p@chr19:48343979..48343982,+
|description=CAGE_peak_at_chr19:48343979..48343982,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:48343979..48343982,+ | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_at_chr19:48343979..48343982,+ | |||
|id=chr19:48343979..48343982,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000243;1.23e-07;15!CL:0000125;1.23e-07;15!CL:0000095;6.29e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.25e-07,15;CL:0000125,1.25e-07,15;CL:0000030,1.25e-07,15;CL:0000339,1.25e-07,15;CL:0000095,6.38e-07,17;CL:0000123,6.38e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.23e-38;3!UBERON:0006238;2.76e-11;10!CL:0000339;1.23e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;1.99e-10;11!DOID:5409;2.52e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,2.03e-10,11;DOID:5409,2.43e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!7.33e-32!2;UBERON:0002757!7.33e-32!2;UBERON:0010134!7.33e-32!2;UBERON:0002784!7.33e-32!2;UBERON:0005408!7.33e-32!2;UBERON:0001899!7.33e-32!2;UBERON:0000966!3.04e-28!5;UBERON:0005388!3.04e-28!5;UBERON:0001802!3.04e-28!5;UBERON:0000970!2.79e-19!20;UBERON:0002104!2.28e-18!21;UBERON:0000020!8.85e-17!23;UBERON:0003296!1.79e-16!4;UBERON:0010133!1.79e-16!4;UBERON:0001032!4.39e-16!24;UBERON:0004456!4.39e-16!24;UBERON:0000019!3.07e-13!19;UBERON:0000047!3.07e-13!19;UBERON:0004088!3.07e-13!19;UBERON:0003072!3.07e-13!19;UBERON:0003071!3.07e-13!19;UBERON:0004128!3.07e-13!19;UBERON:0001456!5.22e-12!21;UBERON:0003056!1.15e-11!61;UBERON:0003075!1.28e-10!86;UBERON:0007284!1.28e-10!86;UBERON:0005743!1.69e-10!86;UBERON:0002346!4.01e-10!90;UBERON:0001894!7.99e-10!7;UBERON:0006222!7.99e-10!7;UBERON:0000073!1.84e-09!94;UBERON:0001016!1.84e-09!94;UBERON:0002360!6.42e-09!2;UBERON:0000094!6.42e-09!2;UBERON:0007645!6.42e-09!2;UBERON:0005085!9.02e-09!29;UBERON:0000033!3.48e-07!123;UBERON:0000153!8.03e-07!129;UBERON:0007811!8.03e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.77e-57;2!UBERON:0002757;4.77e-57;2!UBERON:0010134;4.77e-57;2!UBERON:0005408;4.77e-57;2!UBERON:0001899;4.77e-57;2!UBERON:0003296;3.65e-29;4!UBERON:0010133;3.65e-29;4!UBERON:0002784;3.65e-29;4!UBERON:0000966;1.14e-23;5!UBERON:0005388;1.14e-23;5!UBERON:0001802;1.14e-23;5!UBERON:0001894;3.71e-17;7!UBERON:0000970;1.49e-13;20!UBERON:0002104;6.06e-13;21!UBERON:0000020;6.98e-12;23!UBERON:0001032;2.04e-11;24!UBERON:0004456;2.04e-11;24!UBERON:0000019;5.84e-07;19!UBERON:0000047;5.84e-07;19!UBERON:0004088;5.84e-07;19!UBERON:0010230;5.84e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.77e-57,2;UBERON:0002757,4.77e-57,2;UBERON:0010134,4.77e-57,2;UBERON:0005408,4.77e-57,2;UBERON:0001899,4.77e-57,2;UBERON:0003296,3.65e-29,4;UBERON:0010133,3.65e-29,4;UBERON:0002784,3.65e-29,4;UBERON:0000966,6.48e-20,6;UBERON:0005388,6.48e-20,6;UBERON:0001802,6.48e-20,6;UBERON:0001894,3.71e-17,7;UBERON:0006222,3.71e-17,7;UBERON:0000970,6.06e-13,21;UBERON:0002104,6.06e-13,21;UBERON:0000020,2.04e-11,24;UBERON:0001032,2.04e-11,24;UBERON:0004456,2.04e-11,24;UBERON:0003056,8.30e-08,61;UBERON:0000955,6.13e-07,68;UBERON:0006238,6.13e-07,68 | |||
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|short_description=p@chr19:48343979..48343982,+ | |||
}} | }} |
Latest revision as of 15:36, 27 July 2015
Short description: | p@chr19:48343979..48343982, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:48343979..48343982, + |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.25e-07 | 15 |
glial cell | 1.25e-07 | 15 |
glioblast | 1.25e-07 | 15 |
glioblast (sensu Vertebrata) | 1.25e-07 | 15 |
neuron associated cell | 6.38e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.38e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 4.77e-57 | 2 |
regional part of epithalamus | 4.77e-57 | 2 |
secretory circumventricular organ | 4.77e-57 | 2 |
circumventricular organ | 4.77e-57 | 2 |
epithalamus | 4.77e-57 | 2 |
gland of diencephalon | 3.65e-29 | 4 |
neuroendocrine gland | 3.65e-29 | 4 |
regional part of diencephalon | 3.65e-29 | 4 |
retina | 6.48e-20 | 6 |
photoreceptor array | 6.48e-20 | 6 |
posterior segment of eyeball | 6.48e-20 | 6 |
diencephalon | 3.71e-17 | 7 |
future diencephalon | 3.71e-17 | 7 |
eye | 6.06e-13 | 21 |
visual system | 6.06e-13 | 21 |
sense organ | 2.04e-11 | 24 |
sensory system | 2.04e-11 | 24 |
entire sense organ system | 2.04e-11 | 24 |
pre-chordal neural plate | 8.30e-08 | 61 |
brain | 6.13e-07 | 68 |
future brain | 6.13e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.03e-10 | 11 |
lung small cell carcinoma | 2.43e-08 | 4 |