FFCP PHASE1:Hg19::chr19:54063216..54063233,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:54063216..54063233,+ | |||
|coexpression_cluster_id=C437 | |||
|description=CAGE_peak_at_chr19:54063216..54063233,+ | |||
|id=chr19:54063216..54063233,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.29e-08!140;CL:0002031!2.68e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000624;2.91e-20;6!CL:0000791;3.75e-16;18!CL:0000789;3.75e-16;18!CL:0002419;3.75e-16;18!CL:0000623;1.20e-15;3!CL:0000226;1.11e-14;3!CL:0000842;1.11e-14;3!CL:0000084;2.90e-11;25!CL:0000815;3.82e-10;2!CL:0000792;3.82e-10;2!CL:0002677;3.82e-10;2!CL:0000542;7.05e-09;53!CL:0000097;8.24e-09;5!CL:0002087;4.22e-07;104!CL:0000898;4.90e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.72e-21,136;CL:0000624,2.09e-20,6;CL:0002087,3.26e-20,115;CL:0002031,4.53e-19,120;CL:0000791,2.67e-16,18;CL:0000789,2.67e-16,18;CL:0002420,2.67e-16,18;CL:0002419,2.67e-16,18;CL:0000790,2.67e-16,18;CL:0000037,6.06e-16,168;CL:0000623,1.17e-15,3;CL:0000825,1.17e-15,3;CL:0000838,1.52e-15,52;CL:0000542,3.42e-15,53;CL:0000051,3.42e-15,53;CL:0000226,6.63e-15,3;CL:0000842,6.63e-15,3;CL:0000988,8.10e-15,177;CL:0002032,8.60e-13,161;CL:0000837,8.60e-13,161;CL:0000084,2.29e-11,25;CL:0000827,2.29e-11,25;CL:0000815,2.40e-10,2;CL:0000792,2.40e-10,2;CL:0002677,2.40e-10,2;CL:0000097,6.28e-09,5;CL:0002028,6.28e-09,5;CL:0000898,3.60e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.75e-16;18!CL:0000051;7.05e-09;53!UBERON:0006215;4.90e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.77e-14!115;UBERON:0001049!4.41e-10!57;UBERON:0005068!4.41e-10!57;UBERON:0006241!4.41e-10!57;UBERON:0007135!4.41e-10!57;UBERON:0003075!2.92e-09!86;UBERON:0007284!2.92e-09!86;UBERON:0002346!7.26e-09!90;UBERON:0002780!1.95e-08!41;UBERON:0001890!1.95e-08!41;UBERON:0006240!1.95e-08!41;UBERON:0003080!4.48e-08!42;UBERON:0002616!8.85e-08!59;UBERON:0001017!1.19e-07!82;UBERON:0005743!1.89e-07!86;UBERON:0000955!2.08e-07!69;UBERON:0006238!2.08e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;3.82e-10;2!UBERON:0003978;4.90e-07;3!UBERON:0000946;4.90e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,8.06e-10,2;UBERON:0003978,8.00e-07,3;UBERON:0009751,8.00e-07,3;UBERON:0000946,8.00e-07,3;UBERON:0002523,8.00e-07,3;UBERON:0005983,8.00e-07,3;UBERON:0002165,8.00e-07,3;UBERON:0002062,8.00e-07,3;UBERON:0007280,8.00e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284338464974843,0,0.553995408531877,2.00544447470142,1.73608696572681,0,0,0,0.290796477559129,0,0,0.232429036905685,1.23350366406548,0.929119112685311,0.863077176966451,0.768482119587302,0,1.72372840368309,2.5819387343353,0,0.376484679085209,1.09162460023138,0,0,0.641858054152187,0,0,0.797854630486527,0.426224750532694,0.290209238628584,0,0,2.76373531782418,1.5644487552606,0,0,0,0,0,0,0,0.561643155732475,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,6.83055562931338,4.11066032559657,6.88091810625412,0,0,0.263384084775077,5.11445402295966,8.25322601773246,8.22405995998037,0,1.95553359980154,1.89379122293893,0,0,1.47302953737419,0.221533894583621,1.35401931882508,0,0.390178042679635,0,0,0,1.18629250529648,0,1.04535523804977,0,0,0.68725489096526,1.26509846009751,0,0,0,0,0,0,0,0,1.81446068902259,5.61624411145365,7.82051780967114,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,0.715471872916026,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.088048434013226,1.86595303986695,1.58531948758658,1.51490920111656,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,2.95546140302891,5.60631694634745,6.67383788654692,0.254094624222463,0,0,0.167516265334349,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,2.06768026122887,1.72571360654893,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0.241718899183244,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.470719003883896,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0.121360521749513,0,0.284136146806413,0,0,0,0.994147647766298,0.140669416410513,0,0,0.211125408127993,0.597743964753209,0,0,0,0,0,0,0,0,0.690503839458535,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0.844175070377856,0,1.3269511191747,1.47773809476774,0.438770794307945,0,0,0.384751292518985,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0,0,0.394584402849391,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.34945333648406,0.343972064943233,0,0,0,0,0,0.677942222341597,0,0,0.253243183823515,0.195551382734803,0,0.85381197895741,0,0,0,0.343189995723929,0.14405479798815,0.124252535565433,0,0,0,0,0.288950589901519,0,0.136905378891993,0,0,0,1.11712960508902,0.916641696046735,1.43574604915363,0.199679000498991,0.429226048136571,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0.77380195455795,0.0607495566580247,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0.246277562248017,0,0,0,0,0.387848869084652,0.39669780522807,0.171086837884329,0,0.213574825135389,0.157204305099666,0.828478110694391,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0,0.122026264901963,0.500763722825999,0,0.443716206147409,0,0.138348634936231,0.124980407962107,0,0,0.470531639396343,0,0,0,0.233713309847224,0,0.947015026375446,0,0,0,0.151230923763239,0,0,0,0,0,1.65882483136342,0,0,0,0.380805212168795,0,0,0.322231671127465,0,0.796191777397232,0,0,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0.478901577171454,0.205116364240755,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0.752103283492572,0,0,0,0.163771917510097,0,0.0675375846183947,0.781078098613847,0.620060389503552,0.19024743058172,0.546974809018219,0.548257766857182,0.496211178389294,0,0,0.535701835878287,0.672567444437648,1.82089681270989,0.227662191351298,0,0,0,0.203909198930495,0,0.472775363535873,0.111231401892069,0,0.314231179832004,0,0,0,0,0.500335809236594,0.158013611732727,0.116241425368125,0.347716544605159,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0.335566295393377,0,0,0,0,0,1.45713297917742,0,0.397901550322736,0,0,0.109940516745429,0,0,0.218559560503957,0.940634592723046,0.735444965261716,0,0.588925401344836,0.594092800654172,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0.430018749454354,0.157771562193185,0,0.872701380680755,0.5290268405154,0,0,0,0,0,0,0,0,0.091894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| |||
|short_description=p@chr19:54063216..54063233,+ | |||
}} |
Latest revision as of 17:00, 27 July 2015
Short description: | p@chr19:54063216..54063233, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54063216..54063233, + |
Coexpression cluster: | C437_CD4_CD8_Natural_CD19_thyroid_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.72e-21 | 136 |
CD4-positive, alpha-beta T cell | 2.09e-20 | 6 |
nongranular leukocyte | 3.26e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 4.53e-19 | 120 |
mature alpha-beta T cell | 2.67e-16 | 18 |
alpha-beta T cell | 2.67e-16 | 18 |
immature T cell | 2.67e-16 | 18 |
mature T cell | 2.67e-16 | 18 |
immature alpha-beta T cell | 2.67e-16 | 18 |
hematopoietic stem cell | 6.06e-16 | 168 |
natural killer cell | 1.17e-15 | 3 |
pro-NK cell | 1.17e-15 | 3 |
lymphoid lineage restricted progenitor cell | 1.52e-15 | 52 |
lymphocyte | 3.42e-15 | 53 |
common lymphoid progenitor | 3.42e-15 | 53 |
single nucleate cell | 6.63e-15 | 3 |
mononuclear cell | 6.63e-15 | 3 |
hematopoietic cell | 8.10e-15 | 177 |
hematopoietic oligopotent progenitor cell | 8.60e-13 | 161 |
hematopoietic multipotent progenitor cell | 8.60e-13 | 161 |
T cell | 2.29e-11 | 25 |
pro-T cell | 2.29e-11 | 25 |
regulatory T cell | 2.40e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.40e-10 | 2 |
naive regulatory T cell | 2.40e-10 | 2 |
mast cell | 6.28e-09 | 5 |
basophil mast progenitor cell | 6.28e-09 | 5 |
naive T cell | 3.60e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
atrioventricular valve | 8.06e-10 | 2 |
valve | 8.00e-07 | 3 |
cardiac mesenchyme | 8.00e-07 | 3 |
cardial valve | 8.00e-07 | 3 |
tunica intima | 8.00e-07 | 3 |
heart layer | 8.00e-07 | 3 |
endocardium | 8.00e-07 | 3 |
endocardial cushion | 8.00e-07 | 3 |
presumptive endocardium | 8.00e-07 | 3 |