FFCP PHASE1:Hg19::chr1:12678643..12678655,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:12678643..12678655,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_at_chr1:12678643..12678655,- | |description=CAGE_peak_at_chr1:12678643..12678655,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.14e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0009143;6.23e-07;1 | |ontology_enrichment_development_v019=UBERON:0009143;6.23e-07;1 | ||
|ontology_enrichment_disease=DOID:305!6.68e-09!106 | |ontology_enrichment_disease=DOID:305!6.68e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:4929;7.07e-12;2 | |ontology_enrichment_disease_v019=DOID:4929;7.07e-12;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4929,1.01e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!2.85e-14!129;UBERON:0004185!2.85e-14!129;UBERON:0001007!5.03e-14!155;UBERON:0001555!5.03e-14!155;UBERON:0007026!5.03e-14!155;UBERON:0004119!5.57e-13!169;UBERON:0000925!5.57e-13!169;UBERON:0006595!5.57e-13!169;UBERON:0003929!1.38e-12!54;UBERON:0005911!2.15e-12!82;UBERON:0000077!5.63e-11!130;UBERON:0009497!2.85e-08!25;UBERON:0000015!2.85e-08!25;UBERON:0002423!2.85e-08!25;UBERON:0006235!2.85e-08!25;UBERON:0004161!2.85e-08!25;UBERON:0000466!3.50e-08!126;UBERON:0007499!1.30e-07!25;UBERON:0000481!1.95e-07!347;UBERON:0005156!2.90e-07!59;UBERON:0000990!2.90e-07!59;UBERON:0009856!3.79e-07!26;UBERON:0001041!7.03e-07!98;UBERON:0005177!8.18e-07!107;UBERON:0008835!9.37e-07!22;UBERON:0003894!9.37e-07!22 | |ontology_enrichment_uberon=UBERON:0004921!2.85e-14!129;UBERON:0004185!2.85e-14!129;UBERON:0001007!5.03e-14!155;UBERON:0001555!5.03e-14!155;UBERON:0007026!5.03e-14!155;UBERON:0004119!5.57e-13!169;UBERON:0000925!5.57e-13!169;UBERON:0006595!5.57e-13!169;UBERON:0003929!1.38e-12!54;UBERON:0005911!2.15e-12!82;UBERON:0000077!5.63e-11!130;UBERON:0009497!2.85e-08!25;UBERON:0000015!2.85e-08!25;UBERON:0002423!2.85e-08!25;UBERON:0006235!2.85e-08!25;UBERON:0004161!2.85e-08!25;UBERON:0000466!3.50e-08!126;UBERON:0007499!1.30e-07!25;UBERON:0000481!1.95e-07!347;UBERON:0005156!2.90e-07!59;UBERON:0000990!2.90e-07!59;UBERON:0009856!3.79e-07!26;UBERON:0001041!7.03e-07!98;UBERON:0005177!8.18e-07!107;UBERON:0008835!9.37e-07!22;UBERON:0003894!9.37e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0002108;3.69e-18;4!UBERON:0000160;3.42e-14;17!UBERON:0005409;6.54e-11;22!UBERON:0002368;8.85e-11;33!UBERON:0002423;2.18e-10;25!UBERON:0000949;1.61e-09;43!UBERON:0004921;1.56e-08;33!UBERON:0002114;3.34e-08;2!UBERON:0002107;2.07e-07;19!UBERON:0006925;2.07e-07;19!UBERON:0004913;6.23e-07;1!UBERON:0003703;6.23e-07;1!UBERON:0001174;6.23e-07;1!UBERON:0004914;6.23e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0002108;3.69e-18;4!UBERON:0000160;3.42e-14;17!UBERON:0005409;6.54e-11;22!UBERON:0002368;8.85e-11;33!UBERON:0002423;2.18e-10;25!UBERON:0000949;1.61e-09;43!UBERON:0004921;1.56e-08;33!UBERON:0002114;3.34e-08;2!UBERON:0002107;2.07e-07;19!UBERON:0006925;2.07e-07;19!UBERON:0004913;6.23e-07;1!UBERON:0003703;6.23e-07;1!UBERON:0001174;6.23e-07;1!UBERON:0004914;6.23e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,2.78e-18,4;UBERON:0000160,2.14e-14,17;UBERON:0007499,2.24e-13,25;UBERON:0000949,5.85e-13,45;UBERON:0009856,8.19e-13,26;UBERON:0003929,9.75e-13,54;UBERON:0004921,1.04e-12,118;UBERON:0001007,2.92e-12,145;UBERON:0001555,2.92e-12,145;UBERON:0007026,2.92e-12,145;UBERON:0008835,6.05e-12,22;UBERON:0003894,6.05e-12,22;UBERON:0002368,1.21e-11,35;UBERON:0009854,2.20e-11,23;UBERON:0004119,1.08e-10,160;UBERON:0000925,1.08e-10,160;UBERON:0006595,1.08e-10,160;UBERON:0005911,1.63e-10,82;UBERON:0009497,2.14e-10,25;UBERON:0000015,2.14e-10,25;UBERON:0002423,2.14e-10,25;UBERON:0006235,2.14e-10,25;UBERON:0004161,2.14e-10,25;UBERON:0005409,1.11e-09,25;UBERON:0002114,2.64e-08,2;UBERON:0002530,8.54e-08,59;UBERON:0002107,2.07e-07,19;UBERON:0006925,2.07e-07,19;UBERON:0008836,2.07e-07,19;UBERON:0011216,4.84e-07,223;UBERON:0004913,5.89e-07,1;UBERON:0003703,5.89e-07,1;UBERON:0001174,5.89e-07,1;UBERON:0004914,5.89e-07,1;UBERON:0001041,7.85e-07,87 | |||
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| ||
|short_description=p@chr1:12678643..12678655,- | |short_description=p@chr1:12678643..12678655,- | ||
}} | }} |
Latest revision as of 20:31, 27 July 2015
Short description: | p@chr1:12678643..12678655, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:12678643..12678655, - |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.14e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
small intestine | 2.78e-18 | 4 |
intestine | 2.14e-14 | 17 |
epithelial sac | 2.24e-13 | 25 |
endocrine system | 5.85e-13 | 45 |
sac | 8.19e-13 | 26 |
gut epithelium | 9.75e-13 | 54 |
subdivision of digestive tract | 1.04e-12 | 118 |
digestive system | 2.92e-12 | 145 |
digestive tract | 2.92e-12 | 145 |
primitive gut | 2.92e-12 | 145 |
hepatic diverticulum | 6.05e-12 | 22 |
liver primordium | 6.05e-12 | 22 |
endocrine gland | 1.21e-11 | 35 |
digestive tract diverticulum | 2.20e-11 | 23 |
endoderm-derived structure | 1.08e-10 | 160 |
endoderm | 1.08e-10 | 160 |
presumptive endoderm | 1.08e-10 | 160 |
endo-epithelium | 1.63e-10 | 82 |
epithelium of foregut-midgut junction | 2.14e-10 | 25 |
anatomical boundary | 2.14e-10 | 25 |
hepatobiliary system | 2.14e-10 | 25 |
foregut-midgut junction | 2.14e-10 | 25 |
septum transversum | 2.14e-10 | 25 |
gastrointestinal system | 1.11e-09 | 25 |
duodenum | 2.64e-08 | 2 |
gland | 8.54e-08 | 59 |
liver | 2.07e-07 | 19 |
digestive gland | 2.07e-07 | 19 |
liver bud | 2.07e-07 | 19 |
organ system subdivision | 4.84e-07 | 223 |
hepatopancreatic ampulla | 5.89e-07 | 1 |
extrahepatic bile duct | 5.89e-07 | 1 |
common bile duct | 5.89e-07 | 1 |
duodenal papilla | 5.89e-07 | 1 |
foregut | 7.85e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 1.01e-11 | 2 |