FFCP PHASE1:Hg19::chr1:59041865..59041894,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:59041865..59041894,+ | |||
|description=CAGE_peak_at_chr1:59041865..59041894,+ | |description=CAGE_peak_at_chr1:59041865..59041894,+ | ||
|id=chr1:59041865..59041894,+ | |id=chr1:59041865..59041894,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.85e-22!254;CL:0002076!1.47e-12!43;CL:0002368!1.77e-09!13;CL:0000223!1.53e-08!59;CL:0000860!6.01e-08!45;CL:0000115!2.37e-07!35;CL:0002543!2.63e-07!6;CL:0000076!3.65e-07!62;CL:0002139!5.04e-07!24;CL:0002057!5.68e-07!42 | |ontology_enrichment_celltype=CL:0000066!2.85e-22!254;CL:0002076!1.47e-12!43;CL:0002368!1.77e-09!13;CL:0000223!1.53e-08!59;CL:0000860!6.01e-08!45;CL:0000115!2.37e-07!35;CL:0002543!2.63e-07!6;CL:0000076!3.65e-07!62;CL:0002139!5.04e-07!24;CL:0002057!5.68e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002368;5.32e-13;13!CL:0002543;2.13e-12;6!CL:0002076;4.11e-10;42!CL:0002188;1.59e-09;5!CL:0000860;1.63e-09;33!CL:0002057;1.63e-09;33!CL:0000115;1.29e-08;36!CL:0002202;2.26e-07;9!CL:0002632;2.26e-07;9!CL:0002618;3.56e-07;3 | |ontology_enrichment_celltype_v019=CL:0002368;5.32e-13;13!CL:0002543;2.13e-12;6!CL:0002076;4.11e-10;42!CL:0002188;1.59e-09;5!CL:0000860;1.63e-09;33!CL:0002057;1.63e-09;33!CL:0000115;1.29e-08;36!CL:0002202;2.26e-07;9!CL:0002632;2.26e-07;9!CL:0002618;3.56e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.78e-21,253;CL:0002076,1.13e-13,42;CL:0002368,7.07e-13,13;CL:0002543,1.85e-12,6;CL:0000115,3.04e-10,36;CL:0000223,1.67e-09,58;CL:0002188,3.65e-09,5;CL:0002078,1.81e-08,45;CL:0000860,2.65e-08,42;CL:0002057,2.65e-08,42;CL:0002009,1.29e-07,61;CL:0002202,2.57e-07,9;CL:0002632,2.57e-07,9;CL:0002618,3.38e-07,3;CL:0000473,9.26e-07,48;CL:0000234,9.26e-07,48;CL:0000076,9.42e-07,63;CL:0002328,9.98e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!1.63e-08!14;DOID:305!7.47e-08!106 | |ontology_enrichment_disease=DOID:1749!1.63e-08!14;DOID:305!7.47e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;7.40e-07;14 | |ontology_enrichment_disease_v019=DOID:1749;7.40e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,8.24e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.69e-11!169;UBERON:0000925!4.69e-11!169;UBERON:0006595!4.69e-11!169;UBERON:0001004!6.23e-11!72;UBERON:0000467!1.89e-09!625;UBERON:0000480!2.40e-09!626;UBERON:0000464!7.21e-09!104;UBERON:0000468!4.13e-08!659;UBERON:0000065!5.13e-08!53;UBERON:0002050!5.63e-08!605;UBERON:0005423!5.63e-08!605;UBERON:0000926!6.18e-08!448;UBERON:0004120!6.18e-08!448;UBERON:0006603!6.18e-08!448;UBERON:0000923!1.06e-07!604;UBERON:0005291!1.06e-07!604;UBERON:0006598!1.06e-07!604;UBERON:0002532!1.06e-07!604;UBERON:0001007!1.41e-07!155;UBERON:0001555!1.41e-07!155;UBERON:0007026!1.41e-07!155;UBERON:0000161!1.46e-07!35;UBERON:0000922!2.54e-07!612;UBERON:0000058!6.15e-07!26;UBERON:0000466!6.73e-07!126;UBERON:0000062!6.90e-07!511 | |ontology_enrichment_uberon=UBERON:0004119!4.69e-11!169;UBERON:0000925!4.69e-11!169;UBERON:0006595!4.69e-11!169;UBERON:0001004!6.23e-11!72;UBERON:0000467!1.89e-09!625;UBERON:0000480!2.40e-09!626;UBERON:0000464!7.21e-09!104;UBERON:0000468!4.13e-08!659;UBERON:0000065!5.13e-08!53;UBERON:0002050!5.63e-08!605;UBERON:0005423!5.63e-08!605;UBERON:0000926!6.18e-08!448;UBERON:0004120!6.18e-08!448;UBERON:0006603!6.18e-08!448;UBERON:0000923!1.06e-07!604;UBERON:0005291!1.06e-07!604;UBERON:0006598!1.06e-07!604;UBERON:0002532!1.06e-07!604;UBERON:0001007!1.41e-07!155;UBERON:0001555!1.41e-07!155;UBERON:0007026!1.41e-07!155;UBERON:0000161!1.46e-07!35;UBERON:0000922!2.54e-07!612;UBERON:0000058!6.15e-07!26;UBERON:0000466!6.73e-07!126;UBERON:0000062!6.90e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0001638;2.50e-10;9!UBERON:0003920;2.50e-10;9!UBERON:0004582;2.50e-10;9!UBERON:0002294;2.69e-08;7!UBERON:0001173;2.69e-08;7 | |ontology_enrichment_uberon_v019=UBERON:0001638;2.50e-10;9!UBERON:0003920;2.50e-10;9!UBERON:0004582;2.50e-10;9!UBERON:0002294;2.69e-08;7!UBERON:0001173;2.69e-08;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001638,3.23e-10,9;UBERON:0003920,3.23e-10,9;UBERON:0004582,3.23e-10,9;UBERON:0000058,5.99e-09,19;UBERON:0000080,8.07e-09,9;UBERON:0002120,8.07e-09,9;UBERON:0004875,8.07e-09,9;UBERON:0005721,8.07e-09,9;UBERON:0005754,8.07e-09,9;UBERON:0007297,8.07e-09,9;UBERON:0002294,1.23e-08,9;UBERON:0001173,1.23e-08,9;UBERON:0004912,1.23e-08,9;UBERON:0005103,1.32e-07,8;UBERON:0000083,1.32e-07,8;UBERON:0009201,1.32e-07,8;UBERON:0006553,1.32e-07,8;UBERON:0003074,1.32e-07,8;UBERON:0003060,1.32e-07,8;UBERON:0004119,1.61e-07,160;UBERON:0000925,1.61e-07,160;UBERON:0006595,1.61e-07,160;UBERON:0005911,3.93e-07,82;UBERON:0004876,5.18e-07,11;UBERON:0004815,9.98e-07,3;UBERON:0002031,9.98e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,0,2.75826367343678,3.31326510656075,3.32778609150109,0,0,0,2.21598163412751,0,0,0,0,0,0.726991193897824,15.87078963493,3.63876091781724,0.232429036905685,8.63452564845834,0,0,5.63553554364021,0.236482229888585,0,8.39130088658974,1.35426486594342,0.941211697713023,13.0994952027766,1.57306439111559,0.306083892370903,8.66508373105453,1.27867425159808,0,9.3747919082167,0,0.290209238628584,2.8369261234557,0,0,5.21482918420201,0.217188844705117,0,4.78760926783834,0.632924774881769,0,0,0,0,2.85336096398862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.261958150995425,0,1.48313777113772,2.27183175558278,1.56716763569341,0.132957960518865,0,0,0.371457501329565,0,0,0.347140501607594,0.56530794192401,0,0,0.626984899610432,22.4822580477316,19.9229107104558,17.0707512509982,0.402829317109147,0,0.732186172644509,0,0,11.6089646769304,5.38870494302808,3.82879033643296,15.3316637465883,17.0867818722263,1.46561395144326,0,3.87780264148325,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0.117434498643765,0,0,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0,0,0,0,0,0,0,0.355009592516614,0,0,3.86521706326594,0.545492241181669,2.58124135850103,0,0,0,0,0,0,0,0,0,0,0,0.473227200159376,0.337169380156203,1.20505514941741,0.220587945464788,0,0,0.269662616320329,0.392442930250692,0.38474715694639,5.16708818237254,0,0,0,0,0,0,0,0,0,0.658501712451753,4.49607013030478,1.60846355858609,0.370353780634118,0,0,0,0,0,1.15493158208859,0,0.570762456703795,0,0,0,0.468008530278475,0,1.87467667973554,1.51183915378974,0.425325291727159,0.806026704325635,0.581267877027924,2.30029607499127,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,1.94142780736755,0.106727557803444,1.81876542867756,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80455823272956,2.11786274552562,0,0,0,0.902399225814824,0.308061348417659,0,0,0.422206515571503,1.13733384070897,4.76262374774244,1.0795795805107,6.16909010761157,0,0,0.254876273045038,2.49322802678617,0.447749509444357,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0,0,2.64455864577565,1.15314040419064,13.6545602369205,1.31505115112215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50177493086331,2.01090682660736,2.17781969722645,0.282431402330337,1.72202149068492,0,0.886860307073351,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,2.96343015813436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,1.61158997199083,0,0,0,1.67121139316383,0.296964680832639,1.22864280839693,0,0.140669416410513,0,0,0,0.996239941255349,0.828851746593443,0,0,0,0,1.70749867179921,1.07412704805365,0,0.295930216910801,0,0,0,0,0,0,0.174919999992391,0,0.682760689712998,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.461701551022782,0,0,0.0897576444097721,0.325942115766024,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0.632994193584081,0.163232808159148,0,0,0.995261931078505,0.265372693510018,0,0,0,0,0,0,0,0,0.978323094660449,0,0.789168805698781,0,0,0.63186579628488,0,0,0,0,0,0,0,0,1.38847790668105,1.56787835863004,1.39294730528644,1.22308667769421,0,0.387025325156341,0.219267951258557,0.656923656425674,0.581934098930517,0,0,0,0,0,1.17330829640882,2.16428814679141,1.49417096317547,0,0,0,0,0.288109595976299,4.34883874479014,1.64985824231757,0,0,0,0,0,0,0,0,0,0.837847203816763,1.14580212005842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.82455615637551,6.96421759102155,0,1.0063040627978,0.236417121897595,0.209818352539992,0,0,1.34340638123612,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0.314408610199332,2.07119527673598,0,0,0,5.10673006216145,0,0,0.306345576763462,0.327872630709804,0.157054096250234,0,0,0.1251909307065,0,0,0,0,0,0,0,2.82318983637806,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,1.59296767163702,0,0.310525913752519,0,0,0,0,0,0,0,0.644463342254931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23721566024525,0,0,3.03859956177382,0,0.194860308839388,0.132864840313363,0,0.655219697692825,0,4.6488667138898,0,0.426766918776564,0,0,0,2.51783113895,2.48830904013189,0,0,0,0,0,0,0.123935764259002,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,1.28400018965175,1.15525666150338,0,0,0,0.376051641746286,0,0,0,4.42184177277261,1.18284868973636,0,0,0,0,0,0,0.992422356778588,0,0.638812138197976,0,0.336283722218824,0,0,1.06442844195167,0,0,0.0679697329768317,0,1.06374456795571,2.11339663594931,0.470958557103084,0,0,1.82631744101899,0,0,0.0714765441766563,0,0,0,0,2.27937780579341,0.17071847709395,0.691259661814092,0.430227358820278,0.47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| ||
|short_description=p@chr1:59041865..59041894,+ | |short_description=p@chr1:59041865..59041894,+ | ||
}} | }} |
Latest revision as of 09:23, 28 July 2015
Short description: | p@chr1:59041865..59041894, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:59041865..59041894, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.78e-21 | 253 |
endo-epithelial cell | 1.13e-13 | 42 |
respiratory epithelial cell | 7.07e-13 | 13 |
vein endothelial cell | 1.85e-12 | 6 |
endothelial cell | 3.04e-10 | 36 |
endodermal cell | 1.67e-09 | 58 |
glomerular endothelial cell | 3.65e-09 | 5 |
meso-epithelial cell | 1.81e-08 | 45 |
classical monocyte | 2.65e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.65e-08 | 42 |
macrophage dendritic cell progenitor | 1.29e-07 | 61 |
epithelial cell of tracheobronchial tree | 2.57e-07 | 9 |
epithelial cell of lower respiratory tract | 2.57e-07 | 9 |
endothelial cell of umbilical vein | 3.38e-07 | 3 |
defensive cell | 9.26e-07 | 48 |
phagocyte | 9.26e-07 | 48 |
squamous epithelial cell | 9.42e-07 | 63 |
bronchial epithelial cell | 9.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vein | 3.23e-10 | 9 |
venous blood vessel | 3.23e-10 | 9 |
venous system | 3.23e-10 | 9 |
duct | 5.99e-09 | 19 |
mesonephros | 8.07e-09 | 9 |
pronephros | 8.07e-09 | 9 |
nephrogenic cord | 8.07e-09 | 9 |
pronephric mesoderm | 8.07e-09 | 9 |
rostral part of nephrogenic cord | 8.07e-09 | 9 |
presumptive pronephric mesoderm | 8.07e-09 | 9 |
biliary system | 1.23e-08 | 9 |
biliary tree | 1.23e-08 | 9 |
biliary bud | 1.23e-08 | 9 |
mesonephric epithelium | 1.32e-07 | 8 |
mesonephric tubule | 1.32e-07 | 8 |
nephric duct | 1.32e-07 | 8 |
renal duct | 1.32e-07 | 8 |
mesonephric duct | 1.32e-07 | 8 |
pronephric duct | 1.32e-07 | 8 |
endoderm-derived structure | 1.61e-07 | 160 |
endoderm | 1.61e-07 | 160 |
presumptive endoderm | 1.61e-07 | 160 |
endo-epithelium | 3.93e-07 | 82 |
urogenital ridge | 5.18e-07 | 11 |
lower respiratory tract epithelium | 9.98e-07 | 3 |
epithelium of bronchus | 9.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.24e-07 | 14 |