FFCP PHASE1:Hg19::chr20:23618279..23618323,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:23618279..23618323,+ | |||
|coexpression_cluster_id=C4017 | |coexpression_cluster_id=C4017 | ||
|description=CAGE_peak_at_chr20:23618279..23618323,+ | |description=CAGE_peak_at_chr20:23618279..23618323,+ | ||
|id=chr20:23618279..23618323,+ | |id=chr20:23618279..23618323,+ | ||
|ontology_enrichment_celltype=CL:0002009!4.50e-17!65;CL:0002194!3.35e-16!63;CL:0000576!3.35e-16!63;CL:0000040!3.35e-16!63;CL:0000559!3.35e-16!63;CL:0002057!1.60e-13!42;CL:0000557!2.39e-13!71;CL:0000839!4.14e-12!70;CL:0000860!8.93e-12!45;CL:0000766!1.22e-10!76 | |ontology_enrichment_celltype=CL:0002009!4.50e-17!65;CL:0002194!3.35e-16!63;CL:0000576!3.35e-16!63;CL:0000040!3.35e-16!63;CL:0000559!3.35e-16!63;CL:0002057!1.60e-13!42;CL:0000557!2.39e-13!71;CL:0000839!4.14e-12!70;CL:0000860!8.93e-12!45;CL:0000766!1.22e-10!76 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.12e-11;39!CL:0000234;2.12e-11;39!CL:0000576;6.32e-11;48!CL:0000860;1.89e-10;33!CL:0002057;1.89e-10;33!CL:0000766;7.50e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,7.18e-21,61;CL:0002194,8.05e-20,59;CL:0000576,8.05e-20,59;CL:0000040,8.05e-20,59;CL:0000559,8.05e-20,59;CL:0000473,5.53e-18,48;CL:0000234,5.53e-18,48;CL:0000557,7.61e-17,67;CL:0000839,2.68e-15,66;CL:0000860,7.78e-15,42;CL:0002057,7.78e-15,42;CL:0000766,5.15e-14,72 | |||
|ontology_enrichment_development_v019=CL:0002057;1.53e-11;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!4.20e-24!659;UBERON:0000480!1.81e-21!626;UBERON:0000467!1.82e-21!625;UBERON:0000923!1.12e-20!604;UBERON:0005291!1.12e-20!604;UBERON:0006598!1.12e-20!604;UBERON:0002532!1.12e-20!604;UBERON:0002050!2.64e-20!605;UBERON:0005423!2.64e-20!605;UBERON:0007023!6.27e-20!115;UBERON:0000922!6.45e-20!612;UBERON:0000062!5.74e-16!511;UBERON:0002204!1.35e-15!167;UBERON:0000926!3.25e-15!448;UBERON:0004120!3.25e-15!448;UBERON:0006603!3.25e-15!448;UBERON:0003081!2.00e-14!216;UBERON:0002371!7.42e-11!80;UBERON:0002405!1.48e-10!115;UBERON:0000025!5.76e-10!194;UBERON:0001474!8.29e-10!86;UBERON:0004765!1.02e-09!101;UBERON:0001434!1.02e-09!101;UBERON:0000477!1.28e-09!286;UBERON:0004111!3.59e-09!241;UBERON:0002193!8.26e-09!112;UBERON:0002390!1.19e-08!102;UBERON:0003061!1.19e-08!102;UBERON:0000481!2.10e-07!347;UBERON:0001049!2.77e-07!57;UBERON:0005068!2.77e-07!57;UBERON:0006241!2.77e-07!57;UBERON:0007135!2.77e-07!57;UBERON:0002616!3.68e-07!59;UBERON:0000483!4.47e-07!309;UBERON:0000475!8.87e-07!365;UBERON:0000119!9.90e-07!312 | |ontology_enrichment_uberon=UBERON:0000468!4.20e-24!659;UBERON:0000480!1.81e-21!626;UBERON:0000467!1.82e-21!625;UBERON:0000923!1.12e-20!604;UBERON:0005291!1.12e-20!604;UBERON:0006598!1.12e-20!604;UBERON:0002532!1.12e-20!604;UBERON:0002050!2.64e-20!605;UBERON:0005423!2.64e-20!605;UBERON:0007023!6.27e-20!115;UBERON:0000922!6.45e-20!612;UBERON:0000062!5.74e-16!511;UBERON:0002204!1.35e-15!167;UBERON:0000926!3.25e-15!448;UBERON:0004120!3.25e-15!448;UBERON:0006603!3.25e-15!448;UBERON:0003081!2.00e-14!216;UBERON:0002371!7.42e-11!80;UBERON:0002405!1.48e-10!115;UBERON:0000025!5.76e-10!194;UBERON:0001474!8.29e-10!86;UBERON:0004765!1.02e-09!101;UBERON:0001434!1.02e-09!101;UBERON:0000477!1.28e-09!286;UBERON:0004111!3.59e-09!241;UBERON:0002193!8.26e-09!112;UBERON:0002390!1.19e-08!102;UBERON:0003061!1.19e-08!102;UBERON:0000481!2.10e-07!347;UBERON:0001049!2.77e-07!57;UBERON:0005068!2.77e-07!57;UBERON:0006241!2.77e-07!57;UBERON:0007135!2.77e-07!57;UBERON:0002616!3.68e-07!59;UBERON:0000483!4.47e-07!309;UBERON:0000475!8.87e-07!365;UBERON:0000119!9.90e-07!312 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;7.53e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.30e-23,114;UBERON:0002204,1.28e-17,167;UBERON:0003081,1.31e-16,203;UBERON:0000923,4.29e-16,560;UBERON:0010316,4.29e-16,560;UBERON:0005291,4.29e-16,560;UBERON:0006598,4.29e-16,560;UBERON:0010317,4.29e-16,560;UBERON:0002532,4.29e-16,560;UBERON:0000926,5.01e-16,315;UBERON:0004120,5.01e-16,315;UBERON:0006603,5.01e-16,315;UBERON:0002050,1.00e-15,564;UBERON:0005423,8.36e-15,581;UBERON:0002371,2.43e-14,76;UBERON:0000922,4.71e-14,592;UBERON:0004765,1.72e-13,90;UBERON:0001434,4.69e-13,100;UBERON:0001474,1.61e-12,82;UBERON:0002390,4.51e-12,98;UBERON:0003061,4.51e-12,98;UBERON:0002405,6.30e-12,93;UBERON:0002193,8.07e-12,108;UBERON:0000025,8.16e-08,192;UBERON:0000479,2.19e-07,773 | |||
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| ||
|short_description=p@chr20:23618279..23618323,+ | |short_description=p@chr20:23618279..23618323,+ | ||
}} | }} |
Latest revision as of 12:34, 28 July 2015
Short description: | p@chr20:23618279..23618323, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:23618279..23618323, + |
Coexpression cluster: | C4017_Mesenchymal_Dendritic_salivary_submaxillary_brain_retina_CD14 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 7.18e-21 | 61 |
monopoietic cell | 8.05e-20 | 59 |
monocyte | 8.05e-20 | 59 |
monoblast | 8.05e-20 | 59 |
promonocyte | 8.05e-20 | 59 |
defensive cell | 5.53e-18 | 48 |
phagocyte | 5.53e-18 | 48 |
granulocyte monocyte progenitor cell | 7.61e-17 | 67 |
myeloid lineage restricted progenitor cell | 2.68e-15 | 66 |
classical monocyte | 7.78e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.78e-15 | 42 |
myeloid leukocyte | 5.15e-14 | 72 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.30e-23 | 114 |
musculoskeletal system | 1.28e-17 | 167 |
lateral plate mesoderm | 1.31e-16 | 203 |
germ layer | 4.29e-16 | 560 |
germ layer / neural crest | 4.29e-16 | 560 |
embryonic tissue | 4.29e-16 | 560 |
presumptive structure | 4.29e-16 | 560 |
germ layer / neural crest derived structure | 4.29e-16 | 560 |
epiblast (generic) | 4.29e-16 | 560 |
mesoderm | 5.01e-16 | 315 |
mesoderm-derived structure | 5.01e-16 | 315 |
presumptive mesoderm | 5.01e-16 | 315 |
embryonic structure | 1.00e-15 | 564 |
developing anatomical structure | 8.36e-15 | 581 |
bone marrow | 2.43e-14 | 76 |
embryo | 4.71e-14 | 592 |
skeletal element | 1.72e-13 | 90 |
skeletal system | 4.69e-13 | 100 |
bone element | 1.61e-12 | 82 |
hematopoietic system | 4.51e-12 | 98 |
blood island | 4.51e-12 | 98 |
immune system | 6.30e-12 | 93 |
hemolymphoid system | 8.07e-12 | 108 |
tube | 8.16e-08 | 192 |
tissue | 2.19e-07 | 773 |