FFCP PHASE1:Hg19::chr20:821883..821934,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:821883..821934,+ | |||
|coexpression_cluster_id=C543 | |coexpression_cluster_id=C543 | ||
|description=CAGE_peak_at_chr20:821883..821934,+ | |description=CAGE_peak_at_chr20:821883..821934,+ | ||
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|ontology_enrichment_celltype=CL:0000066!1.35e-19!254;CL:0002076!1.57e-14!43;CL:0000223!5.72e-13!59;CL:0002368!5.13e-08!13;CL:0002251!1.75e-07!21 | |ontology_enrichment_celltype=CL:0000066!1.35e-19!254;CL:0002076!1.57e-14!43;CL:0000223!5.72e-13!59;CL:0002368!5.13e-08!13;CL:0002251!1.75e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;6.16e-17;42!CL:0002251;2.72e-12;20!CL:0002368;3.54e-12;13!CL:0002202;1.76e-08;9!CL:0002632;1.76e-08;9!CL:0002159;2.26e-07;14!CL:0000349;2.92e-07;19 | |ontology_enrichment_celltype_v019=CL:0002076;6.16e-17;42!CL:0002251;2.72e-12;20!CL:0002368;3.54e-12;13!CL:0002202;1.76e-08;9!CL:0002632;1.76e-08;9!CL:0002159;2.26e-07;14!CL:0000349;2.92e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.24e-27,253;CL:0002076,4.49e-22,42;CL:0000223,7.07e-17,58;CL:0002251,2.41e-12,20;CL:0002368,3.10e-12,13;CL:0002202,1.51e-08,9;CL:0002632,1.51e-08,9;CL:0002159,2.05e-07,14;CL:0000349,3.23e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;6.25e-09;58 | |ontology_enrichment_development_v019=CL:0000223;6.25e-09;58 | ||
|ontology_enrichment_disease=DOID:305!1.57e-09!106;DOID:1749!5.53e-07!14 | |ontology_enrichment_disease=DOID:305!1.57e-09!106;DOID:1749!5.53e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.67e-09;14 | |ontology_enrichment_disease_v019=DOID:1749;1.67e-09;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,1.01e-09,14;DOID:305,2.36e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.94e-19!169;UBERON:0000925!5.94e-19!169;UBERON:0006595!5.94e-19!169;UBERON:0001007!3.16e-14!155;UBERON:0001555!3.16e-14!155;UBERON:0007026!3.16e-14!155;UBERON:0000481!6.41e-14!347;UBERON:0000077!3.79e-12!130;UBERON:0000161!6.47e-12!35;UBERON:0004921!6.91e-12!129;UBERON:0004185!6.91e-12!129;UBERON:0001004!5.18e-11!72;UBERON:0000475!6.68e-11!365;UBERON:0005911!7.69e-10!82;UBERON:0003104!2.66e-09!238;UBERON:0009142!2.66e-09!238;UBERON:0000466!6.76e-09!126;UBERON:0000464!8.52e-09!104;UBERON:0001008!1.05e-08!45;UBERON:0005157!1.28e-08!51;UBERON:0005631!2.23e-08!14;UBERON:0000158!2.23e-08!14;UBERON:0006554!2.38e-08!44;UBERON:0005153!2.43e-08!37;UBERON:0002530!3.29e-08!59;UBERON:0000064!3.68e-08!219;UBERON:0003102!8.54e-08!95;UBERON:0000468!1.69e-07!659;UBERON:0000062!2.39e-07!511;UBERON:0000065!2.68e-07!53;UBERON:0000166!2.82e-07!21;UBERON:0001444!3.32e-07!48;UBERON:0003064!3.93e-07!37;UBERON:0001041!6.01e-07!98 | |ontology_enrichment_uberon=UBERON:0004119!5.94e-19!169;UBERON:0000925!5.94e-19!169;UBERON:0006595!5.94e-19!169;UBERON:0001007!3.16e-14!155;UBERON:0001555!3.16e-14!155;UBERON:0007026!3.16e-14!155;UBERON:0000481!6.41e-14!347;UBERON:0000077!3.79e-12!130;UBERON:0000161!6.47e-12!35;UBERON:0004921!6.91e-12!129;UBERON:0004185!6.91e-12!129;UBERON:0001004!5.18e-11!72;UBERON:0000475!6.68e-11!365;UBERON:0005911!7.69e-10!82;UBERON:0003104!2.66e-09!238;UBERON:0009142!2.66e-09!238;UBERON:0000466!6.76e-09!126;UBERON:0000464!8.52e-09!104;UBERON:0001008!1.05e-08!45;UBERON:0005157!1.28e-08!51;UBERON:0005631!2.23e-08!14;UBERON:0000158!2.23e-08!14;UBERON:0006554!2.38e-08!44;UBERON:0005153!2.43e-08!37;UBERON:0002530!3.29e-08!59;UBERON:0000064!3.68e-08!219;UBERON:0003102!8.54e-08!95;UBERON:0000468!1.69e-07!659;UBERON:0000062!2.39e-07!511;UBERON:0000065!2.68e-07!53;UBERON:0000166!2.82e-07!21;UBERON:0001444!3.32e-07!48;UBERON:0003064!3.93e-07!37;UBERON:0001041!6.01e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0005178;4.59e-09;34!UBERON:0002224;4.59e-09;34!UBERON:0000161;5.89e-09;19!UBERON:0000166;5.89e-09;19!UBERON:0005181;3.25e-08;35!UBERON:0000165;1.15e-07;28!UBERON:0005631;1.22e-07;10!UBERON:0000158;1.22e-07;10!UBERON:0007196;1.64e-07;15!UBERON:0001558;1.64e-07;15!UBERON:0005911;2.25e-07;36!UBERON:0001041;4.06e-07;14!UBERON:0006554;4.24e-07;30!UBERON:0001008;4.24e-07;30!UBERON:0000478;4.39e-07;24!UBERON:0000365;5.04e-07;5!UBERON:0000344;8.36e-07;20!UBERON:0000915;9.34e-07;52 | |ontology_enrichment_uberon_v019=UBERON:0005178;4.59e-09;34!UBERON:0002224;4.59e-09;34!UBERON:0000161;5.89e-09;19!UBERON:0000166;5.89e-09;19!UBERON:0005181;3.25e-08;35!UBERON:0000165;1.15e-07;28!UBERON:0005631;1.22e-07;10!UBERON:0000158;1.22e-07;10!UBERON:0007196;1.64e-07;15!UBERON:0001558;1.64e-07;15!UBERON:0005911;2.25e-07;36!UBERON:0001041;4.06e-07;14!UBERON:0006554;4.24e-07;30!UBERON:0001008;4.24e-07;30!UBERON:0000478;4.39e-07;24!UBERON:0000365;5.04e-07;5!UBERON:0000344;8.36e-07;20!UBERON:0000915;9.34e-07;52 | ||
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|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0.872338524100369,0,0,0,3.93174298402414,27.9120467188971,10.0483031179879,11.078213085595,1.23766352960047,1.65698687863958,0.672325146451775,0,0,0,0.369363174230364,0,1.25381888591235,0,0.410623275218653,0.376627918784408,0,0,0.0787107813136792,9.04737836752479,0.383829398097213,0.464448369948228,11.9524759182261,12.3494426699083,14.4204063965047,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.205601498999509,0.334372990781356,0.977766799900771,0,0,0.334231370655521,0,0.221533894583621,0,0.768547918354051,0.130059347559878,0.164437904603676,0,1.44901542867526,0,0.267540828089713,0,0.566546713487831,0,0,0,0.637130828648193,0.651083453856419,0,0.301150238155546,0.383959833463255,0,0,0,0.403213486449465,0,0,0,0,0.511450247374121,0,1.00267582127178,1.73815822752988,0,0.973269740605272,0.472674085820339,0,0.351339142772504,0.851363990735132,29.5079183516959,19.2807910247903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,25.293455024267,0.496971951695318,0,0,0,0.709336764396714,0,0,0.49333509683432,0,0.269421344139376,0.490385709340376,0.756787138224657,0,0.70296429550139,0.312160076830321,0,0.149448680551801,0.23486899728753,0.161872944368132,0,0,0,0.619954687054593,0,0.247266929278557,0,1.43723628363248,0,0,0,0.438977620880838,0.30648779579902,0.300476117813194,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0.618315175430633,0.257640540045629,0,0,0.68205903612839,0.252433774244115,0.184099797284599,0.969876340912871,0.355009592516614,0.302256294682921,0.847802961552438,4.25173876959253,4.09119180886252,4.87567812161307,2.07355300420312,2.51806559810822,2.90484857173796,2.28054321033815,2.27088765788066,0.72995471815166,0,0,1.38134921352481,0.464367928031979,0,0.709840800239063,0.505754070234305,0,0.55146986366197,0.217879444092406,0,0.404493924480493,0,0.38474715694639,0,0,1.6462960453256,0,0,0.982827216677626,0,0,2.58275720940538,1.3725424823882,7.79227026401241,12.3641928583382,4.72486170334665,8.1477831739506,0.651616610620649,1.03993478527958,0,0.463721619900307,0.352226082707465,0,0,0.380508304469197,12.6432703673484,3.43394464837949,0,0,0,5.62403003920662,4.36753533317035,4.96212840348353,3.13454829459969,4.06887513919547,12.651628412452,0,0,0,0.432359860250884,0.25248486685276,0,0,0,1.71072446022705,0,0,0,0,0,0,0.517086863031111,0,0,0.797814349754612,0,1.02882949704857,0,0,0.428933980974443,0.542621605391443,0.823240336780769,0,0.355391948742546,0.791951872933429,0,1.74306691720059,0.799783929456456,0,0,0,0,2.29723871668228,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,1.71768088406796,1.00034104211935,1.89885516589815,0.623912584592421,0.178428988797162,0.315404830067869,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0.737476674166813,0.173767228936166,0.587403472388222,0.686286847621712,0.206768026122887,0.215714200818617,0,8.79069957194152,8.32177197552485,10.2812699732091,0.744323423456331,0,0.280660094433074,0,0.511707249066704,0.321707842287215,0,0,0.177561725313127,0,0,0,3.86750238693191,9.02279116364782,15.2854441633588,0.114814448164607,0.546273504020151,0.786746489756545,6.31679458070376,2.0794141018192,4.70609861506113,2.92278449306521,1.89992932007176,0,0,0.215915916102139,0,2.43851793789468,5.01689773854853,1.78413391131527,2.49322802678617,0.447749509444357,0,0,1.53870075069834,0.984043937099117,0.976135183992909,2.7821073144885,0,0,11.4853107599234,9.75090369054782,0,0,0,0.15350367472613,0,0.322260734604821,0.435050081742686,0.0852266274161009,0.178064071293475,6.94196644516108,6.72665235777872,3.1903178123646,13.4539848537881,0.464845549297286,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.572499546967965,0,0.632758849437452,0.38126038784765,0,0,0.95460974377781,0.78494864019923,0.179872457583315,1.37268514868027,0.471249609382746,0.404364963146632,0,0,1.95053495635836,0,1.05650146756755,0.545999645631943,0.848432591722276,1.13008116620243,0,0,1.31535265576129,1.15755106853338,0.655894752046633,0,0.30982349809975,0.845086807596724,0.143411352204052,1.27723753317057,0.35667105148125,1.06428319221179,1.05553817648832,0.329294892959902,0.75894634753143,1.39973888097993,5.67710465080521,12.73574323518,8.71127878890581,0.941438007767792,13.3456665528081,26.9554361068201,22.6149378303705,7.58087220682966,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18138918693974,0,0,0,0,8.35605696581915,7.12715233998333,6.75753544618311,0,0,0,0,0.422250816255987,1.19548792950642,0.276283915531148,2.01546198283421,0,0,0,3.95420745048238,0.895105873378046,0,2.66337195219721,0,0,0.969332746095218,0.463840490809256,0,2.86470537193757,23.1768999989919,6.52499617891314,17.0690172428249,11.94992156376,0,0,0,0,0.885741385813839,0,0,0,1.18219047581419,0.65815619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| ||
|short_description=p@chr20:821883..821934,+ | |short_description=p@chr20:821883..821934,+ | ||
}} | }} |
Latest revision as of 16:36, 28 July 2015
Short description: | p@chr20:821883..821934, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:821883..821934, + |
Coexpression cluster: | C543_Alveolar_Corneal_Urothelial_amniotic_Esophageal_Tracheal_esophagus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.24e-27 | 253 |
endo-epithelial cell | 4.49e-22 | 42 |
endodermal cell | 7.07e-17 | 58 |
epithelial cell of alimentary canal | 2.41e-12 | 20 |
respiratory epithelial cell | 3.10e-12 | 13 |
epithelial cell of tracheobronchial tree | 1.51e-08 | 9 |
epithelial cell of lower respiratory tract | 1.51e-08 | 9 |
general ecto-epithelial cell | 2.05e-07 | 14 |
extraembryonic cell | 3.23e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.35e-20 | 160 |
endoderm | 1.35e-20 | 160 |
presumptive endoderm | 1.35e-20 | 160 |
digestive system | 4.82e-14 | 145 |
digestive tract | 4.82e-14 | 145 |
primitive gut | 4.82e-14 | 145 |
renal system | 8.29e-14 | 48 |
respiratory system | 2.17e-13 | 74 |
urinary system structure | 3.05e-13 | 47 |
orifice | 4.48e-13 | 36 |
subdivision of digestive tract | 8.31e-12 | 118 |
extraembryonic membrane | 1.80e-11 | 14 |
membranous layer | 1.80e-11 | 14 |
epithelial bud | 3.62e-10 | 37 |
thoracic cavity element | 4.12e-10 | 34 |
thoracic cavity | 4.12e-10 | 34 |
epithelial fold | 6.17e-10 | 47 |
thoracic segment of trunk | 1.22e-09 | 52 |
oral opening | 1.24e-09 | 22 |
thoracic segment organ | 1.25e-09 | 35 |
endo-epithelium | 3.19e-09 | 82 |
trunk region element | 3.19e-09 | 101 |
chorion | 5.12e-09 | 7 |
subdivision of trunk | 3.37e-08 | 112 |
respiratory tract | 3.68e-08 | 54 |
foregut | 8.09e-08 | 87 |
tracheobronchial tree | 1.38e-07 | 15 |
lower respiratory tract | 1.38e-07 | 15 |
head | 2.22e-07 | 56 |
mouth | 3.05e-07 | 29 |
stomodeum | 3.05e-07 | 29 |
surface structure | 3.94e-07 | 99 |
urothelium | 4.76e-07 | 5 |
extraembryonic structure | 4.79e-07 | 24 |
mucosa | 8.14e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.01e-09 | 14 |
carcinoma | 2.36e-09 | 106 |