FFCP PHASE1:Hg19::chr20:8719953..8719966,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:8719953..8719966,+
|short_description=p@chr20:8719953..8719966,+
|description=CAGE_peak_at_chr20:8719953..8719966,+
|association_with_transcript=NA
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:8719953..8719966,+ | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_at_chr20:8719953..8719966,+ | |||
|id=chr20:8719953..8719966,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002582;1.53e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002582,1.81e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0005754;7.62e-26;1!UBERON:0007297;1.21e-13;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!2.12e-19!22;UBERON:0001893!1.09e-17!34;UBERON:0001869!1.11e-17!32;UBERON:0002780!1.19e-17!41;UBERON:0001890!1.19e-17!41;UBERON:0006240!1.19e-17!41;UBERON:0002020!1.47e-17!34;UBERON:0003528!1.47e-17!34;UBERON:0003080!4.98e-17!42;UBERON:0002791!7.93e-17!33;UBERON:0001950!8.76e-17!20;UBERON:0000956!2.11e-16!25;UBERON:0000203!2.11e-16!25;UBERON:0001049!3.19e-13!57;UBERON:0005068!3.19e-13!57;UBERON:0006241!3.19e-13!57;UBERON:0007135!3.19e-13!57;UBERON:0002616!1.78e-12!59;UBERON:0000955!1.06e-11!69;UBERON:0006238!1.06e-11!69;UBERON:0001017!1.52e-11!82;UBERON:0000073!1.18e-10!94;UBERON:0001016!1.18e-10!94;UBERON:0005743!1.53e-10!86;UBERON:0003056!3.04e-09!61;UBERON:0007023!5.39e-09!115;UBERON:0000200!6.93e-08!6;UBERON:0003075!7.51e-08!86;UBERON:0007284!7.51e-08!86;UBERON:0002346!3.92e-07!90;UBERON:0002021!6.42e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000998;7.62e-26;1!UBERON:0006868;7.62e-26;1!UBERON:0001950;2.32e-19;20!UBERON:0002619;1.00e-17;22!UBERON:0000200;1.50e-17;6!UBERON:0000956;9.69e-16;25!UBERON:0000203;9.69e-16;25!UBERON:0002771;6.85e-14;2!UBERON:0002702;1.21e-13;2!UBERON:0001869;3.78e-13;32!UBERON:0001893;1.34e-12;34!UBERON:0002791;4.85e-12;32!UBERON:0003528;4.96e-12;34!UBERON:0002020;4.96e-12;34!UBERON:0001870;1.53e-09;3!UBERON:0006947;1.53e-09;3!UBERON:0004054;1.53e-09;3!UBERON:0005904;1.80e-07;4!UBERON:0002780;4.78e-07;41!UBERON:0001890;4.78e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000998,5.93e-26,1;UBERON:0006868,5.93e-26,1;UBERON:0001950,2.11e-19,20;UBERON:0002619,9.21e-18,22;UBERON:0000200,1.22e-17,6;UBERON:0000956,8.97e-16,25;UBERON:0000203,8.97e-16,25;UBERON:0002771,6.43e-14,2;UBERON:0002702,9.40e-14,2;UBERON:0002791,1.57e-12,32;UBERON:0001869,1.57e-12,32;UBERON:0003528,7.69e-12,34;UBERON:0002020,7.69e-12,34;UBERON:0001893,7.69e-12,34;UBERON:0002780,6.13e-10,41;UBERON:0001890,6.13e-10,41;UBERON:0003080,6.13e-10,41;UBERON:0006240,6.13e-10,41;UBERON:0001870,1.30e-09,3;UBERON:0006947,1.41e-09,3;UBERON:0004054,1.41e-09,3;UBERON:0000073,8.16e-08,53;UBERON:0002616,8.16e-08,53;UBERON:0005904,1.69e-07,4;UBERON:0001049,2.02e-07,56;UBERON:0005068,2.02e-07,56;UBERON:0006241,2.02e-07,56;UBERON:0007135,2.02e-07,56;UBERON:0003056,7.52e-07,61 | |||
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| ||
|short_description=p@chr20:8719953..8719966,+ | |||
}} | }} |
Latest revision as of 16:36, 28 July 2015
Short description: | p@chr20:8719953..8719966, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:8719953..8719966, + |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
visceral preadipocyte | 1.81e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
seminal vesicle | 5.93e-26 | 1 |
seminal fluid secreting gland | 5.93e-26 | 1 |
neocortex | 2.11e-19 | 20 |
regional part of cerebral cortex | 9.21e-18 | 22 |
gyrus | 1.22e-17 | 6 |
cerebral cortex | 8.97e-16 | 25 |
pallium | 8.97e-16 | 25 |
middle temporal gyrus | 6.43e-14 | 2 |
middle frontal gyrus | 9.40e-14 | 2 |
regional part of telencephalon | 1.57e-12 | 32 |
cerebral hemisphere | 1.57e-12 | 32 |
brain grey matter | 7.69e-12 | 34 |
gray matter | 7.69e-12 | 34 |
telencephalon | 7.69e-12 | 34 |
regional part of forebrain | 6.13e-10 | 41 |
forebrain | 6.13e-10 | 41 |
anterior neural tube | 6.13e-10 | 41 |
future forebrain | 6.13e-10 | 41 |
frontal cortex | 1.30e-09 | 3 |
male genital duct | 1.41e-09 | 3 |
internal male genitalia | 1.41e-09 | 3 |
regional part of nervous system | 8.16e-08 | 53 |
regional part of brain | 8.16e-08 | 53 |
duct of male reproductive system | 1.69e-07 | 4 |
neural tube | 2.02e-07 | 56 |
neural rod | 2.02e-07 | 56 |
future spinal cord | 2.02e-07 | 56 |
neural keel | 2.02e-07 | 56 |
pre-chordal neural plate | 7.52e-07 | 61 |