FFCP PHASE1:Hg19::chr2:204816181..204816219,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:204816181..204816219,- | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_at_chr2:204816181..204816219,- | |description=CAGE_peak_at_chr2:204816181..204816219,- | ||
|id=chr2:204816181..204816219,- | |id=chr2:204816181..204816219,- | ||
|ontology_enrichment_celltype=CL:0000624!2.72e-41!6;CL:0000898!1.59e-21!3;CL:0000791!1.99e-21!18;CL:0000789!1.99e-21!18;CL:0002420!1.99e-21!18;CL:0002419!1.99e-21!18;CL:0000790!1.99e-21!18;CL:0000810!6.47e-17!1;CL:0000895!6.47e-17!1;CL:0002436!6.47e-17!1;CL:0002427!6.47e-17!1;CL:0002428!6.47e-17!1;CL:0002429!6.47e-17!1;CL:0002433!6.47e-17!1;CL:0002431!6.47e-17!1;CL:0002432!6.47e-17!1;CL:0000084!1.86e-15!25;CL:0000827!1.86e-15!25;CL:0000080!5.09e-11!6;CL:0000838!2.10e-10!52;CL:0000542!3.33e-10!53;CL:0000051!3.33e-10!53;CL:0000893!4.02e-09!2;CL:0002489!4.02e-09!2;CL:0000809!4.02e-09!2;CL:0000808!4.02e-09!2;CL:0000894!4.02e-09!2;CL:0000806!4.02e-09!2;CL:0000807!4.02e-09!2;CL:0000805!4.02e-09!2;CL:0002425!4.02e-09!2;CL:0000815!5.49e-09!2;CL:0000792!5.49e-09!2;CL:0002677!5.49e-09!2;CL:0002087!1.64e-07!119;CL:0000988!2.27e-07!182 | |ontology_enrichment_celltype=CL:0000624!2.72e-41!6;CL:0000898!1.59e-21!3;CL:0000791!1.99e-21!18;CL:0000789!1.99e-21!18;CL:0002420!1.99e-21!18;CL:0002419!1.99e-21!18;CL:0000790!1.99e-21!18;CL:0000810!6.47e-17!1;CL:0000895!6.47e-17!1;CL:0002436!6.47e-17!1;CL:0002427!6.47e-17!1;CL:0002428!6.47e-17!1;CL:0002429!6.47e-17!1;CL:0002433!6.47e-17!1;CL:0002431!6.47e-17!1;CL:0002432!6.47e-17!1;CL:0000084!1.86e-15!25;CL:0000827!1.86e-15!25;CL:0000080!5.09e-11!6;CL:0000838!2.10e-10!52;CL:0000542!3.33e-10!53;CL:0000051!3.33e-10!53;CL:0000893!4.02e-09!2;CL:0002489!4.02e-09!2;CL:0000809!4.02e-09!2;CL:0000808!4.02e-09!2;CL:0000894!4.02e-09!2;CL:0000806!4.02e-09!2;CL:0000807!4.02e-09!2;CL:0000805!4.02e-09!2;CL:0002425!4.02e-09!2;CL:0000815!5.49e-09!2;CL:0000792!5.49e-09!2;CL:0002677!5.49e-09!2;CL:0002087!1.64e-07!119;CL:0000988!2.27e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000895;3.34e-66;1!CL:0000898;3.66e-23;3!CL:0000624;2.59e-12;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000810,4.66e-66,1;CL:0000895,4.66e-66,1;CL:0002436,4.66e-66,1;CL:0002427,4.66e-66,1;CL:0002428,4.66e-66,1;CL:0002429,4.66e-66,1;CL:0002433,4.66e-66,1;CL:0002431,4.66e-66,1;CL:0002432,4.66e-66,1;CL:0000893,7.05e-34,2;CL:0002489,7.05e-34,2;CL:0000809,7.05e-34,2;CL:0000808,7.05e-34,2;CL:0000894,7.05e-34,2;CL:0000806,7.05e-34,2;CL:0000807,7.05e-34,2;CL:0000805,7.05e-34,2;CL:0002425,7.05e-34,2;CL:0000898,4.09e-23,3;CL:0000624,2.74e-12,6 | |||
|ontology_enrichment_development_v019=CL:0002427;3.34e-66;1!CL:0002425;5.96e-34;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;7.35e-18;4!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:3905;1.04e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,7.35e-18,4;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:3905,1.04e-08,9 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.03e-17,4;UBERON:0005058,1.03e-17,4;UBERON:0009113,1.03e-17,4;UBERON:0003295,1.03e-17,4;UBERON:0005562,1.03e-17,4;UBERON:0003351,2.74e-12,6;UBERON:0004177,9.89e-11,7;UBERON:0005057,9.89e-11,7;UBERON:0004807,1.47e-10,28;UBERON:0000974,6.56e-08,10;UBERON:0003408,6.56e-08,10;UBERON:0001042,6.56e-08,10;UBERON:0009145,6.56e-08,10;UBERON:0006562,2.63e-07,11;UBERON:0009722,2.63e-07,11;UBERON:0007690,2.63e-07,11;UBERON:0000072,1.00e-06,47 | |||
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|short_description=p@chr2:204816181..204816219,- | |short_description=p@chr2:204816181..204816219,- | ||
}} | }} |
Latest revision as of 05:18, 29 July 2015
Short description: | p@chr2:204816181..204816219, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:204816181..204816219, - |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 4.66e-66 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 4.66e-66 | 1 |
mature CD4 single-positive thymocyte | 4.66e-66 | 1 |
resting double-positive thymocyte | 4.66e-66 | 1 |
double-positive blast | 4.66e-66 | 1 |
CD69-positive double-positive thymocyte | 4.66e-66 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 4.66e-66 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 4.66e-66 | 1 |
CD24-positive, CD4 single-positive thymocyte | 4.66e-66 | 1 |
thymocyte | 7.05e-34 | 2 |
double negative thymocyte | 7.05e-34 | 2 |
double-positive, alpha-beta thymocyte | 7.05e-34 | 2 |
DN4 thymocyte | 7.05e-34 | 2 |
DN1 thymic pro-T cell | 7.05e-34 | 2 |
DN2 thymocyte | 7.05e-34 | 2 |
DN3 thymocyte | 7.05e-34 | 2 |
immature single positive thymocyte | 7.05e-34 | 2 |
early T lineage precursor | 7.05e-34 | 2 |
naive T cell | 4.09e-23 | 3 |
CD4-positive, alpha-beta T cell | 2.74e-12 | 6 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.03e-17 | 4 |
hemolymphoid system gland | 1.03e-17 | 4 |
thymic region | 1.03e-17 | 4 |
pharyngeal gland | 1.03e-17 | 4 |
thymus primordium | 1.03e-17 | 4 |
pharyngeal epithelium | 2.74e-12 | 6 |
hemopoietic organ | 9.89e-11 | 7 |
immune organ | 9.89e-11 | 7 |
respiratory system epithelium | 1.47e-10 | 28 |
neck | 6.56e-08 | 10 |
gland of gut | 6.56e-08 | 10 |
chordate pharynx | 6.56e-08 | 10 |
pharyngeal region of foregut | 6.56e-08 | 10 |
pharynx | 2.63e-07 | 11 |
entire pharyngeal arch endoderm | 2.63e-07 | 11 |
early pharyngeal endoderm | 2.63e-07 | 11 |
segment of respiratory tract | 1.00e-06 | 47 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 7.35e-18 | 4 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
lung carcinoma | 1.04e-08 | 9 |