FFCP PHASE1:Hg19::chr2:87036803..87036819,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:87036803..87036819,+ | |||
|coexpression_cluster_id=C476 | |||
|description=CAGE_peak_at_chr2:87036803..87036819,+ | |description=CAGE_peak_at_chr2:87036803..87036819,+ | ||
|id=chr2:87036803..87036819,+ | |id=chr2:87036803..87036819,+ | ||
|ontology_enrichment_celltype=CL:0000625!3.84e-50!11;CL:0000791!6.34e-30!18;CL:0000789!6.34e-30!18;CL:0002420!6.34e-30!18;CL:0002419!6.34e-30!18;CL:0000790!6.34e-30!18;CL:0000084!2.44e-25!25;CL:0000827!2.44e-25!25;CL:0000838!4.67e-11!52;CL:0000542!8.27e-11!53;CL:0000051!8.27e-11!53 | |ontology_enrichment_celltype=CL:0000625!3.84e-50!11;CL:0000791!6.34e-30!18;CL:0000789!6.34e-30!18;CL:0002420!6.34e-30!18;CL:0002419!6.34e-30!18;CL:0000790!6.34e-30!18;CL:0000084!2.44e-25!25;CL:0000827!2.44e-25!25;CL:0000838!4.67e-11!52;CL:0000542!8.27e-11!53;CL:0000051!8.27e-11!53 | ||
|ontology_enrichment_celltype_v019=CL:0000625;7.33e-97;11!CL:0000791;2.62e-59;18!CL:0000789;2.62e-59;18!CL:0002419;2.62e-59;18!CL:0000084;9.28e-43;25!CL:0000542;1.08e-13;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,7.88e-97,11;CL:0000791,2.74e-59,18;CL:0000789,2.74e-59,18;CL:0002420,2.74e-59,18;CL:0002419,2.74e-59,18;CL:0000790,2.74e-59,18;CL:0000084,9.58e-43,25;CL:0000827,9.58e-43,25;CL:0000838,1.37e-20,52;CL:0000542,3.35e-20,53;CL:0000051,3.35e-20,53;CL:0002087,3.61e-09,115;CL:0002031,8.82e-09,120;CL:0000738,9.95e-08,136 | |||
|ontology_enrichment_development_v019=CL:0000790;2.62e-59;18!CL:0000051;1.08e-13;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!8.50e-08!7;UBERON:0000989!5.89e-07!1;UBERON:0008811!5.89e-07!1;UBERON:0006258!5.89e-07!1;UBERON:0005876!5.89e-07!1;UBERON:0004874!5.89e-07!1;UBERON:0001154!9.25e-07!1;UBERON:0001153!9.25e-07!1;UBERON:0002370!9.54e-07!4;UBERON:0005058!9.54e-07!4;UBERON:0009113!9.54e-07!4;UBERON:0003295!9.54e-07!4;UBERON:0005562!9.54e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.99e-45;2!UBERON:0005058;6.99e-45;2!UBERON:0009113;6.99e-45;2!UBERON:0004177;1.18e-18;5!UBERON:0005057;1.18e-18;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.60e-23,4;UBERON:0005058,4.60e-23,4;UBERON:0009113,4.60e-23,4;UBERON:0003295,4.60e-23,4;UBERON:0005562,4.60e-23,4;UBERON:0003351,9.74e-16,6;UBERON:0004177,1.23e-13,7;UBERON:0005057,1.23e-13,7;UBERON:0000974,7.74e-10,10;UBERON:0003408,7.74e-10,10;UBERON:0001042,7.74e-10,10;UBERON:0009145,7.74e-10,10;UBERON:0006562,5.00e-09,11;UBERON:0009722,5.00e-09,11;UBERON:0007690,5.00e-09,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,2.22995790026868,1.95325036156926,2.85135613334512,0.301150238155546,2.8157054453972,3.74792179657038,1.4206635122641,0.821127996921047,0,1.33720097891754,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385870790539723,0.218559560503957,0,0,0,0,0.297046400327086,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,1.80848947540817,4.77975300078106,0,0.0636471582781649,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,2.22995790026868,1.95325036156926,2.85135613334512,0.301150238155546,2.8157054453972,3.74792179657038,1.4206635122641,0.821127996921047,0,1.33720097891754,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385870790539723,0.218559560503957,0,0,0,0,0.297046400327086,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,1.80848947540817,4.77975300078106,0,0.0636471582781649,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p@chr2:87036803..87036819,+ | |short_description=p@chr2:87036803..87036819,+ | ||
}} | }} |
Latest revision as of 12:55, 29 July 2015
Short description: | p@chr2:87036803..87036819, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:87036803..87036819, + |
Coexpression cluster: | C476_thymus_acute_Hodgkin_CD4_CD8_chronic_vein |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 7.88e-97 | 11 |
mature alpha-beta T cell | 2.74e-59 | 18 |
alpha-beta T cell | 2.74e-59 | 18 |
immature T cell | 2.74e-59 | 18 |
mature T cell | 2.74e-59 | 18 |
immature alpha-beta T cell | 2.74e-59 | 18 |
T cell | 9.58e-43 | 25 |
pro-T cell | 9.58e-43 | 25 |
lymphoid lineage restricted progenitor cell | 1.37e-20 | 52 |
lymphocyte | 3.35e-20 | 53 |
common lymphoid progenitor | 3.35e-20 | 53 |
nongranular leukocyte | 3.61e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 8.82e-09 | 120 |
leukocyte | 9.95e-08 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.60e-23 | 4 |
hemolymphoid system gland | 4.60e-23 | 4 |
thymic region | 4.60e-23 | 4 |
pharyngeal gland | 4.60e-23 | 4 |
thymus primordium | 4.60e-23 | 4 |
pharyngeal epithelium | 9.74e-16 | 6 |
hemopoietic organ | 1.23e-13 | 7 |
immune organ | 1.23e-13 | 7 |
neck | 7.74e-10 | 10 |
gland of gut | 7.74e-10 | 10 |
chordate pharynx | 7.74e-10 | 10 |
pharyngeal region of foregut | 7.74e-10 | 10 |
pharynx | 5.00e-09 | 11 |
entire pharyngeal arch endoderm | 5.00e-09 | 11 |
early pharyngeal endoderm | 5.00e-09 | 11 |