FFCP PHASE1:Hg19::chr3:193855009..193855029,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:193855009..193855029,+ | |||
|description=CAGE_peak_at_chr3:193855009..193855029,+ | |description=CAGE_peak_at_chr3:193855009..193855029,+ | ||
|id=chr3:193855009..193855029,+ | |id=chr3:193855009..193855029,+ | ||
|ontology_enrichment_celltype=CL:0000569!5.60e-07!4;CL:0000011!5.60e-07!4 | |ontology_enrichment_celltype=CL:0000569!5.60e-07!4;CL:0000011!5.60e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000569;5.91e-38;4!CL:0002494;5.21e-10;16!CL:0000723;1.56e-09;61!CL:0000134;7.25e-09;55!CL:0000048;5.28e-08;58!CL:0002573;8.14e-07;2!CL:0000632;8.14e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000569,5.23e-38,4;CL:0000011,5.23e-38,4;CL:0002494,5.06e-10,16;CL:0002573,6.14e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000011;5.91e-38;4 | |||
|ontology_enrichment_disease=DOID:2394!3.37e-11!14;DOID:120!6.36e-08!27;DOID:193!4.43e-07!29 | |ontology_enrichment_disease=DOID:2394!3.37e-11!14;DOID:120!6.36e-08!27;DOID:193!4.43e-07!29 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.84e-29;14!DOID:3571;7.36e-18;1!DOID:120;2.34e-15;27!DOID:193;2.64e-14;29!DOID:3350;1.33e-09;2!DOID:3193;1.33e-09;2!DOID:962;1.33e-09;2!DOID:1192;8.14e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.84e-29,14;DOID:3571,1.70e-17,1;DOID:120,2.34e-15,27;DOID:193,2.64e-14,29;DOID:3193,8.69e-10,2;DOID:962,8.69e-10,2;DOID:3350,2.02e-09,2;DOID:1192,6.14e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000992!1.33e-09!13;UBERON:0002118!6.54e-08!5;UBERON:0004532!6.54e-08!5 | |ontology_enrichment_uberon=UBERON:0000992!1.33e-09!13;UBERON:0002118!6.54e-08!5;UBERON:0004532!6.54e-08!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002118;3.36e-14;5!UBERON:0000992;4.42e-12;13!UBERON:0007100;5.62e-11;25!UBERON:0000991;1.07e-07;21!UBERON:0000948;1.98e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002118,3.84e-14,5;UBERON:0000992,4.60e-12,13;UBERON:0007100,3.74e-10,27;UBERON:0000991,1.09e-07,21;UBERON:0009196,1.09e-07,21;UBERON:0009117,1.09e-07,21;UBERON:0005564,1.09e-07,21;UBERON:0004176,2.31e-07,22;UBERON:0000948,7.32e-07,24;UBERON:0005498,7.32e-07,24;UBERON:0004140,7.32e-07,24;UBERON:0009881,7.32e-07,24;UBERON:0004141,7.32e-07,24;UBERON:0003084,7.32e-07,24;UBERON:0007005,7.32e-07,24;UBERON:0004139,7.32e-07,24;UBERON:0004291,7.32e-07,24 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.289693037921647,0,0.973269740605272,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0.275118041940067,0.208994966536811,0,0.35576626268671,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.926864265692532,0,0,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.680593098960126,0,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0.264145302039678,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.775630294546667,0,1.690605505112,0,0,0,0,0,0.57191197463259,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0.767309866440312,0,0.128139149255701,0,0.321707842287215,0,0,0.532685175939381,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0.356128142586949,0,0,0,0.10115778085555,0,0.62962469366128,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430234056612155,0.196498082026242,0.35667105148125,0,0.633322905892992,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.307801034015188,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0.311064574191741,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0.290268993867255,0.146178634172371,0.164230914106418,0.0969890164884194,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11585728720936,0.0671834724867263,1.08089965062721,0,0,0.164831716762333,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0.182248669974074,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0.0620964029413835,0,0,0,0,0.470531639396343,0,0,0.149254802886874,0.467426619694449,0,0.947015026375446,0.251567901752575,0,3.66144109435078,1.66354016139563,1.5543720058278,0.887130899937803,0.796483835818512,0,0.621051827505038,1.65882483136342,0.265841714557995,0,1.35231848097497,1.90402606084398,0.813741466409323,1.63663793282303,0.966695013382396,1.39210127963548,0.398095888698616,0,0.343395705182793,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0.245772908753719,0.422624246717254,0,0,0,0,0,0.279759015438889,0,0,0.107824811396682,0,0,0.848662649770126,0.425149840203366,0.371807292777007,0.558644917973244,1.90802610392051,0,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0.138314504928436,0.161475645631851,0,0,0,0,0.462102664601353,0.381382095467167,0,0,0.150420656698515,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0.342976018874837,0.0679697329768317,0.0657727735628491,0,0.222462803784138,0.156986185701028,0,0.280272163313789,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0.8453114551668,0.169927114687817,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0,0.436350690340377,0,0,0,0,0,0,0.126698501011437,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0.404234377916439,0,0.342233301085281,0,0.143444410785353,0,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | |phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.289693037921647,0,0.973269740605272,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0.275118041940067,0.208994966536811,0,0.35576626268671,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.926864265692532,0,0,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.680593098960126,0,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0.264145302039678,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.775630294546667,0,1.690605505112,0,0,0,0,0,0.57191197463259,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0.767309866440312,0,0.128139149255701,0,0.321707842287215,0,0,0.532685175939381,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0.356128142586949,0,0,0,0.10115778085555,0,0.62962469366128,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430234056612155,0.196498082026242,0.35667105148125,0,0.633322905892992,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.307801034015188,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0.311064574191741,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0.290268993867255,0.146178634172371,0.164230914106418,0.0969890164884194,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11585728720936,0.0671834724867263,1.08089965062721,0,0,0.164831716762333,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0.182248669974074,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0.0620964029413835,0,0,0,0,0.470531639396343,0,0,0.149254802886874,0.467426619694449,0,0.947015026375446,0.251567901752575,0,3.66144109435078,1.66354016139563,1.5543720058278,0.887130899937803,0.796483835818512,0,0.621051827505038,1.65882483136342,0.265841714557995,0,1.35231848097497,1.90402606084398,0.813741466409323,1.63663793282303,0.966695013382396,1.39210127963548,0.398095888698616,0,0.343395705182793,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0.245772908753719,0.422624246717254,0,0,0,0,0,0.279759015438889,0,0,0.107824811396682,0,0,0.848662649770126,0.425149840203366,0.371807292777007,0.558644917973244,1.90802610392051,0,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0.138314504928436,0.161475645631851,0,0,0,0,0.462102664601353,0.381382095467167,0,0,0.150420656698515,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0.342976018874837,0.0679697329768317,0.0657727735628491,0,0.222462803784138,0.156986185701028,0,0.280272163313789,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0.8453114551668,0.169927114687817,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0,0.436350690340377,0,0,0,0,0,0,0.126698501011437,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0.404234377916439,0,0.342233301085281,0,0.143444410785353,0,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr3:193855009..193855029,+ | |short_description=p@chr3:193855009..193855029,+ | ||
}} | }} |
Latest revision as of 19:35, 29 July 2015
Short description: | p@chr3:193855009..193855029, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:193855009..193855029, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 5.23e-38 | 4 |
migratory trunk neural crest cell | 5.23e-38 | 4 |
cardiocyte | 5.06e-10 | 16 |
Schwann cell | 6.14e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
right ovary | 3.84e-14 | 5 |
female gonad | 4.60e-12 | 13 |
primary circulatory organ | 3.74e-10 | 27 |
gonad | 1.09e-07 | 21 |
indifferent external genitalia | 1.09e-07 | 21 |
indifferent gonad | 1.09e-07 | 21 |
gonad primordium | 1.09e-07 | 21 |
external genitalia | 2.31e-07 | 22 |
heart | 7.32e-07 | 24 |
primitive heart tube | 7.32e-07 | 24 |
primary heart field | 7.32e-07 | 24 |
anterior lateral plate mesoderm | 7.32e-07 | 24 |
heart tube | 7.32e-07 | 24 |
heart primordium | 7.32e-07 | 24 |
cardiac mesoderm | 7.32e-07 | 24 |
cardiogenic plate | 7.32e-07 | 24 |
heart rudiment | 7.32e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.84e-29 | 14 |
liver cancer | 1.70e-17 | 1 |
female reproductive organ cancer | 2.34e-15 | 27 |
reproductive organ cancer | 2.64e-14 | 29 |
peripheral nerve sheath neoplasm | 8.69e-10 | 2 |
neurofibroma | 8.69e-10 | 2 |
mesenchymal cell neoplasm | 2.02e-09 | 2 |
peripheral nervous system neoplasm | 6.14e-07 | 3 |