FFCP PHASE1:Hg19::chr3:58034268..58034295,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:58034268..58034295,+ | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_at_chr3:58034268..58034295,+ | |||
|id=chr3:58034268..58034295,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.84e-28!24;CL:0000115!3.22e-26!35;CL:0000213!1.68e-23!57;CL:0000215!1.68e-23!57;CL:0002078!2.53e-23!44;CL:0000071!4.28e-21!18;CL:0002546!4.28e-21!18;CL:0000076!5.87e-15!62;CL:0000066!1.48e-13!254;CL:0000222!2.18e-12!119;CL:1000413!2.84e-10!9;CL:0005020!6.28e-09!6;CL:0002138!6.28e-09!6;CL:0005022!6.28e-09!6;CL:0002543!8.26e-09!6;CL:0000220!4.47e-08!246;CL:0002321!7.32e-08!248 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.85e-98;24!CL:0000071;6.17e-84;18!CL:0000115;1.09e-75;36!CL:0002078;1.90e-55;45!CL:1000413;1.28e-43;9!CL:0000213;1.53e-36;58!CL:0000215;1.53e-36;58!CL:0002544;1.32e-26;6!CL:0002543;6.03e-25;6!CL:0002618;7.35e-19;3!CL:0002144;9.68e-19;3!CL:0000076;3.43e-17;63!CL:0002138;5.65e-17;6!CL:0002188;2.75e-11;5!CL:1000746;3.36e-08;7!CL:1000612;3.36e-08;7!CL:0002174;1.38e-07;1!CL:0000501;1.38e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,5.71e-99,24;CL:0000115,1.30e-93,36;CL:0000071,1.82e-84,18;CL:0002546,1.82e-84,18;CL:0002078,1.54e-80,45;CL:0000213,2.37e-66,58;CL:0000215,2.37e-66,58;CL:1000413,6.27e-44,9;CL:0000222,8.61e-32,121;CL:0000076,8.93e-28,63;CL:0002544,1.05e-26,6;CL:0002543,6.06e-25,6;CL:0002144,5.43e-19,3;CL:0002618,1.84e-18,3;CL:0005020,5.56e-17,6;CL:0002138,5.56e-17,6;CL:0005022,5.56e-17,6;CL:0000066,5.68e-15,253;CL:0002321,1.59e-12,250;CL:0002188,3.30e-11,5;CL:1000746,3.81e-08,7;CL:1000612,3.81e-08,7;CL:0002174,1.51e-07,1;CL:0000501,1.51e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002546;6.17e-84;18!CL:0005022;5.65e-17;6!CL:0000222;5.29e-12;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!4.28e-21!18;UBERON:0004638!4.28e-21!18;UBERON:0004852!4.28e-21!18;UBERON:0000487!3.29e-18!22;UBERON:0006914!3.37e-15!25;UBERON:0003914!3.20e-14!118;UBERON:0000055!3.08e-13!69;UBERON:0002049!1.25e-12!79;UBERON:0007798!1.25e-12!79;UBERON:0003915!2.84e-10!9;UBERON:0004700!2.84e-10!9;UBERON:0001917!2.84e-10!9;UBERON:0001009!8.10e-10!113;UBERON:0004872!8.14e-10!84;UBERON:0001981!8.51e-10!60;UBERON:0007500!8.51e-10!60;UBERON:0004537!8.51e-10!60;UBERON:0006965!8.51e-10!60;UBERON:0004535!5.03e-09!110;UBERON:0004111!1.66e-08!241;UBERON:0000025!2.22e-07!194;UBERON:0000477!5.98e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.17e-84;18!UBERON:0001986;6.17e-84;18!UBERON:0004852;6.17e-84;18!UBERON:0000487;4.34e-68;22!UBERON:0006914;1.58e-59;25!UBERON:0003915;1.28e-43;9!UBERON:0004700;1.28e-43;9!UBERON:0001917;1.28e-43;9!UBERON:0000490;9.99e-40;33!UBERON:0000055;9.72e-22;65!UBERON:0010523;9.68e-19;3!UBERON:0001915;9.68e-19;3!UBERON:0001982;9.68e-19;3!UBERON:0007500;1.75e-17;56!UBERON:0001981;1.75e-17;56!UBERON:0004537;1.75e-17;56!UBERON:0001638;1.36e-16;9!UBERON:0003920;1.36e-16;9!UBERON:0004582;1.36e-16;9!UBERON:0002049;1.73e-14;75!UBERON:0007798;1.73e-14;75!UBERON:0003914;4.80e-14;74!UBERON:0001473;9.06e-13;8!UBERON:0004536;9.06e-13;8!UBERON:0006558;9.06e-13;8!UBERON:0002066;1.55e-11;5!UBERON:0002465;3.07e-10;10!UBERON:0000025;2.41e-09;93!UBERON:0004535;1.82e-08;109!UBERON:0001637;2.53e-08;42!UBERON:0003509;2.53e-08;42!UBERON:0004572;2.53e-08;42!UBERON:0000074;3.36e-08;7!UBERON:0001229;3.36e-08;7!UBERON:0001009;6.15e-08;112!UBERON:0000947;1.98e-07;21!UBERON:0010191;1.98e-07;21!UBERON:0000119;3.41e-07;139!UBERON:0004111;4.13e-07;130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.82e-84,18;UBERON:0001986,1.82e-84,18;UBERON:0004852,1.82e-84,18;UBERON:0000487,1.60e-68,22;UBERON:0006914,6.59e-60,25;UBERON:0003915,6.27e-44,9;UBERON:0004700,6.27e-44,9;UBERON:0001917,6.27e-44,9;UBERON:0000055,7.63e-36,68;UBERON:0002049,1.09e-30,78;UBERON:0007798,1.09e-30,78;UBERON:0007500,1.00e-26,59;UBERON:0001981,1.00e-26,59;UBERON:0004537,1.00e-26,59;UBERON:0006965,1.00e-26,59;UBERON:0004535,1.02e-20,109;UBERON:0001009,4.78e-20,112;UBERON:0010523,5.43e-19,3;UBERON:0001915,5.43e-19,3;UBERON:0001982,5.43e-19,3;UBERON:0003914,9.33e-19,117;UBERON:0004872,5.75e-18,83;UBERON:0001638,1.37e-16,9;UBERON:0003920,1.37e-16,9;UBERON:0004582,1.37e-16,9;UBERON:0001473,8.94e-13,8;UBERON:0004536,8.94e-13,8;UBERON:0006558,8.94e-13,8;UBERON:0002066,2.66e-11,5;UBERON:0004111,5.70e-11,240;UBERON:0002465,3.04e-10,10;UBERON:0000490,9.75e-10,148;UBERON:0000025,1.15e-09,192;UBERON:0001637,1.77e-08,42;UBERON:0003509,1.77e-08,42;UBERON:0004572,1.77e-08,42;UBERON:0010532,3.81e-08,7;UBERON:0000074,3.81e-08,7;UBERON:0001229,3.81e-08,7;UBERON:0001230,3.81e-08,7;UBERON:0003220,3.81e-08,7;UBERON:0005749,3.81e-08,7;UBERON:0004199,3.81e-08,7;UBERON:0004209,3.81e-08,7;UBERON:0004198,3.81e-08,7;UBERON:0003081,6.91e-08,203;UBERON:0000947,1.86e-07,21;UBERON:0010191,1.86e-07,21;UBERON:0005103,3.49e-07,8;UBERON:0000083,3.49e-07,8;UBERON:0009201,3.49e-07,8;UBERON:0006553,3.49e-07,8;UBERON:0003074,3.49e-07,8;UBERON:0003060,3.49e-07,8 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0.737201809504527,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.351339142772504,0.0654895377488563,0,0.741568885568859,0,0,0,0,0,0,4.77029777680092,5.16140757063675,3.12426451446835,3.39184765154406,1.67799774483962,1.37559020970034,5.01587919688345,4.13466814670926,2.49036383880697,4.35136796594071,2.81980521976403,1.52054421143703,1.46437234528902,3.67663080345869,0,3.03619076165871,1.12264686313085,1.0135033243499,1.53316637465883,0.949265659568129,1.83201743930407,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0.300091096084402,0,0,0.18611685633159,0,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,0,0.272746120590835,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,2.95262181849859,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0.866198686566443,1.38895653772983,0.761016608938393,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0.519254429183621,0,0,0,0,0,0,0,0,0.15403067420883,0,1.46139224653261,0.316654886678627,1.13733384070897,1.02056223165909,0.215915916102139,1.54227252690289,0,0,0,0,0.223874754722178,0,0,0,1.31205858279882,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0.0890320356467374,0,0.384380134730212,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.608731130888112,0.6196469961995,0.281695602532241,0,0,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0.23874448473769,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0.0897576444097721,1.08647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.843992258112108,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,3.00646838828985,0,0,0,0,1.19472429772959,0,0.138674673013139,0.347119476670262,0,0.34823682632161,0.17472666824203,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0.171594997861965,0.432164393964449,0.124252535565433,0,0.543616824294456,0.523014231561666,0,0,0,0,0,2.14882720709979,0,0.279282401272254,0.229160424011684,0,0,0.429226048136571,0.446342914883745,0,0,0,0.157566364614447,0.0824158583811665,0,0.0984274815147488,0.338693328263138,0,0,0,0.412618309791701,0.415440338029185,0,0,0.0607495566580247,0,0.157611414598396,0.104909176269996,0.211200673038813,0,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.171086837884329,0,0.106787412567695,0,0,0,0,0,0,0,0.5013797880454,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0.449803112163605,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0,0,0.192619830407303,0,0,0,1.15761237161917,0,1.07453304648892,0,0,0.176689145945881,0.192914038270915,0.844712203265363,0.512483037175893,0.345430341731199,0.303859956177382,0,0,0.398594520940089,0.163565394255844,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0.0981477185010256,0,0,0.462102664601353,0,0,0,0,0,0,0,0,0.295712172434091,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0.171488009437418,0,0,0.709163045303809,0,0.078493092850514,0,0.280272163313789,0,0.431855182437243,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0.111855431797792,0,0,0.647428837187895,0.307988420568741,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0.641930933513346,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0.126698501011437,0.305966489225945,0,0.0918948995348449,0.250707539292375,0.0757786982182394,0.267964130156178,0,0,0,0,0.0645889098360061,0,0,0.12729431655633,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0.179650404213174,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr3:58034268..58034295,+ | |||
}} |
Latest revision as of 22:52, 29 July 2015
Short description: | p@chr3:58034268..58034295, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:58034268..58034295, + |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 5.71e-99 | 24 |
endothelial cell | 1.30e-93 | 36 |
blood vessel endothelial cell | 1.82e-84 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.82e-84 | 18 |
meso-epithelial cell | 1.54e-80 | 45 |
lining cell | 2.37e-66 | 58 |
barrier cell | 2.37e-66 | 58 |
endothelial cell of artery | 6.27e-44 | 9 |
mesodermal cell | 8.61e-32 | 121 |
squamous epithelial cell | 8.93e-28 | 63 |
aortic endothelial cell | 1.05e-26 | 6 |
vein endothelial cell | 6.06e-25 | 6 |
capillary endothelial cell | 5.43e-19 | 3 |
endothelial cell of umbilical vein | 1.84e-18 | 3 |
lymphangioblast | 5.56e-17 | 6 |
endothelial cell of lymphatic vessel | 5.56e-17 | 6 |
vascular lymphangioblast | 5.56e-17 | 6 |
epithelial cell | 5.68e-15 | 253 |
embryonic cell | 1.59e-12 | 250 |
glomerular endothelial cell | 3.30e-11 | 5 |
glomerular cell | 3.81e-08 | 7 |
kidney corpuscule cell | 3.81e-08 | 7 |
follicular cell of ovary | 1.51e-07 | 1 |
granulosa cell | 1.51e-07 | 1 |