FFCP PHASE1:Hg19::chr3:87841949..87841976,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:87841949..87841976,+ | |||
|coexpression_cluster_id=C565 | |coexpression_cluster_id=C565 | ||
|description=CAGE_peak_at_chr3:87841949..87841976,+ | |description=CAGE_peak_at_chr3:87841949..87841976,+ | ||
|id=chr3:87841949..87841976,+ | |id=chr3:87841949..87841976,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000037;1.86e-07;1!CL:0001024;1.86e-07;1!CL:0002032;2.16e-07;1!CL:0000557;2.16e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0001024,1.86e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!5.93e-09!8 | |ontology_enrichment_disease=DOID:1036!5.93e-09!8 | ||
|ontology_enrichment_disease_v019=DOID:1036;4.09e-25;8!DOID:8692;1.99e-24;31!DOID:1240;8.65e-17;39!DOID:2531;4.13e-10;51!DOID:0060083;4.13e-10;51!DOID:3347;7.50e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,2.68e-25,8;DOID:8692,6.83e-25,31;DOID:1240,2.69e-19,39;DOID:2531,3.40e-14,51;DOID:0060083,3.40e-14,51;DOID:3347,5.78e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.57e-24!115;UBERON:0002780!1.08e-20!41;UBERON:0001890!1.08e-20!41;UBERON:0006240!1.08e-20!41;UBERON:0003080!5.61e-20!42;UBERON:0001893!3.56e-19!34;UBERON:0002020!3.79e-19!34;UBERON:0003528!3.79e-19!34;UBERON:0001049!4.57e-19!57;UBERON:0005068!4.57e-19!57;UBERON:0006241!4.57e-19!57;UBERON:0007135!4.57e-19!57;UBERON:0002616!2.87e-18!59;UBERON:0002791!3.49e-18!33;UBERON:0001869!1.51e-17!32;UBERON:0001017!4.96e-17!82;UBERON:0005743!1.06e-16!86;UBERON:0002346!1.89e-16!90;UBERON:0000955!6.32e-16!69;UBERON:0006238!6.32e-16!69;UBERON:0000073!9.48e-16!94;UBERON:0001016!9.48e-16!94;UBERON:0003075!1.23e-15!86;UBERON:0007284!1.23e-15!86;UBERON:0003056!6.74e-14!61;UBERON:0001950!1.29e-13!20;UBERON:0002619!1.43e-13!22;UBERON:0000956!6.70e-13!25;UBERON:0000203!6.70e-13!25;UBERON:0000153!7.02e-12!129;UBERON:0007811!7.02e-12!129;UBERON:0000033!4.39e-10!123;UBERON:0000924!5.44e-09!173;UBERON:0006601!5.44e-09!173;UBERON:0004121!2.25e-08!169;UBERON:0002308!6.16e-08!9;UBERON:0000125!6.16e-08!9 | |ontology_enrichment_uberon=UBERON:0007023!3.57e-24!115;UBERON:0002780!1.08e-20!41;UBERON:0001890!1.08e-20!41;UBERON:0006240!1.08e-20!41;UBERON:0003080!5.61e-20!42;UBERON:0001893!3.56e-19!34;UBERON:0002020!3.79e-19!34;UBERON:0003528!3.79e-19!34;UBERON:0001049!4.57e-19!57;UBERON:0005068!4.57e-19!57;UBERON:0006241!4.57e-19!57;UBERON:0007135!4.57e-19!57;UBERON:0002616!2.87e-18!59;UBERON:0002791!3.49e-18!33;UBERON:0001869!1.51e-17!32;UBERON:0001017!4.96e-17!82;UBERON:0005743!1.06e-16!86;UBERON:0002346!1.89e-16!90;UBERON:0000955!6.32e-16!69;UBERON:0006238!6.32e-16!69;UBERON:0000073!9.48e-16!94;UBERON:0001016!9.48e-16!94;UBERON:0003075!1.23e-15!86;UBERON:0007284!1.23e-15!86;UBERON:0003056!6.74e-14!61;UBERON:0001950!1.29e-13!20;UBERON:0002619!1.43e-13!22;UBERON:0000956!6.70e-13!25;UBERON:0000203!6.70e-13!25;UBERON:0000153!7.02e-12!129;UBERON:0007811!7.02e-12!129;UBERON:0000033!4.39e-10!123;UBERON:0000924!5.44e-09!173;UBERON:0006601!5.44e-09!173;UBERON:0004121!2.25e-08!169;UBERON:0002308!6.16e-08!9;UBERON:0000125!6.16e-08!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.81e-12;2!UBERON:0005058;4.81e-12;2!UBERON:0009113;4.81e-12;2!UBERON:0001474;8.62e-08;18!UBERON:0001389;7.50e-07;1!UBERON:0007195;7.50e-07;1!UBERON:0000026;7.50e-07;1!UBERON:0008784;7.50e-07;1!UBERON:0006058;7.50e-07;1!UBERON:0003663;7.50e-07;1!UBERON:0004256;7.50e-07;1!UBERON:0004708;7.50e-07;1!UBERON:0002101;7.50e-07;1!UBERON:0004709;7.50e-07;1!UBERON:0002529;7.50e-07;1!UBERON:0010538;7.50e-07;1!UBERON:0003661;7.50e-07;1!UBERON:0010890;7.50e-07;1!UBERON:0002471;7.50e-07;1!UBERON:0001383;7.50e-07;1!UBERON:0010758;7.50e-07;1!UBERON:0010707;7.50e-07;1!UBERON:0000978;7.50e-07;1!UBERON:0002103;7.50e-07;1!UBERON:0001665;7.50e-07;1!UBERON:0003823;7.50e-07;1!UBERON:0000154;7.50e-07;1!UBERON:0010709;7.50e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005418,6.12e-07,1;UBERON:0001389,6.12e-07,1;UBERON:0000026,6.12e-07,1;UBERON:0008784,6.12e-07,1;UBERON:0006058,6.12e-07,1;UBERON:0003663,6.12e-07,1;UBERON:0004256,6.12e-07,1;UBERON:0004708,6.12e-07,1;UBERON:0002101,6.12e-07,1;UBERON:0004709,6.12e-07,1;UBERON:0002529,6.12e-07,1;UBERON:0010538,6.12e-07,1;UBERON:0003661,6.12e-07,1;UBERON:0010890,6.12e-07,1;UBERON:0002471,6.12e-07,1;UBERON:0001383,6.12e-07,1;UBERON:0004357,6.12e-07,1;UBERON:0004347,6.12e-07,1;UBERON:0005420,6.12e-07,1;UBERON:0005732,6.12e-07,1;UBERON:0010758,6.12e-07,1;UBERON:0010707,6.12e-07,1;UBERON:0000978,6.12e-07,1;UBERON:0002103,6.12e-07,1;UBERON:0001665,6.12e-07,1;UBERON:0003823,6.12e-07,1;UBERON:0000154,6.12e-07,1;UBERON:0010709,6.12e-07,1;UBERON:0005733,6.12e-07,1;UBERON:0005730,6.12e-07,1;UBERON:0007195,8.67e-07,1 | |||
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|short_description=p@chr3:87841949..87841976,+ | |short_description=p@chr3:87841949..87841976,+ | ||
}} | }} |
Latest revision as of 23:49, 29 July 2015
Short description: | p@chr3:87841949..87841976, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:87841949..87841976, + |
Coexpression cluster: | C565_CD34_CD133_acute_thymus_Hodgkin_Burkitt_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD34-positive, CD38-negative hematopoietic stem cell | 1.86e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
hindlimb bud | 6.12e-07 | 1 |
soleus muscle | 6.12e-07 | 1 |
appendage | 6.12e-07 | 1 |
lower limb segment | 6.12e-07 | 1 |
multi-limb segment region | 6.12e-07 | 1 |
hindlimb muscle | 6.12e-07 | 1 |
hindlimb zeugopod muscle | 6.12e-07 | 1 |
paired limb/fin | 6.12e-07 | 1 |
limb | 6.12e-07 | 1 |
pelvic appendage | 6.12e-07 | 1 |
limb segment | 6.12e-07 | 1 |
paired limb/fin segment | 6.12e-07 | 1 |
limb muscle | 6.12e-07 | 1 |
pelvic complex muscle | 6.12e-07 | 1 |
zeugopod | 6.12e-07 | 1 |
muscle of leg | 6.12e-07 | 1 |
paired limb/fin bud | 6.12e-07 | 1 |
limb bud | 6.12e-07 | 1 |
pelvic appendage bud | 6.12e-07 | 1 |
limb/fin field | 6.12e-07 | 1 |
subdivision of organism along appendicular axis | 6.12e-07 | 1 |
appendage girdle complex | 6.12e-07 | 1 |
leg | 6.12e-07 | 1 |
hindlimb | 6.12e-07 | 1 |
triceps surae | 6.12e-07 | 1 |
hindlimb zeugopod | 6.12e-07 | 1 |
posterior region of body | 6.12e-07 | 1 |
pelvic complex | 6.12e-07 | 1 |
limb field | 6.12e-07 | 1 |
hindlimb/pelvic fin field | 6.12e-07 | 1 |
stroma of bone marrow | 8.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 2.68e-25 | 8 |
myeloid leukemia | 6.83e-25 | 31 |
leukemia | 2.69e-19 | 39 |
hematologic cancer | 3.40e-14 | 51 |
immune system cancer | 3.40e-14 | 51 |
osteosarcoma | 5.78e-07 | 1 |