FFCP PHASE1:Hg19::chr3:98633389..98633415,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:98633389..98633415,+ | |||
|description=CAGE_peak_at_chr3:98633389..98633415,+ | |description=CAGE_peak_at_chr3:98633389..98633415,+ | ||
|id=chr3:98633389..98633415,+ | |id=chr3:98633389..98633415,+ | ||
|ontology_enrichment_celltype=CL:0000064!5.17e-18!3;CL:0005012!5.17e-18!3;CL:0000067!5.17e-18!3;CL:0002304!5.17e-18!3;CL:0000066!9.69e-12!254;CL:0000342!4.01e-07!1;CL:0002565!4.01e-07!1;CL:1001319!8.49e-07!1;CL:1000600!8.49e-07!1 | |ontology_enrichment_celltype=CL:0000064!5.17e-18!3;CL:0005012!5.17e-18!3;CL:0000067!5.17e-18!3;CL:0002304!5.17e-18!3;CL:0000066!9.69e-12!254;CL:0000342!4.01e-07!1;CL:0002565!4.01e-07!1;CL:1001319!8.49e-07!1;CL:1000600!8.49e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:1000415;1.33e-15;2!CL:0000306;2.03e-08;4!CL:0002222;2.03e-08;4!CL:0002224;2.03e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,1.33e-15,2;CL:0000306,1.96e-08,4;CL:0002222,1.96e-08,4;CL:0002224,1.96e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0009497;1.24e-09;13!UBERON:0001041;3.87e-09;30 | |||
|ontology_enrichment_disease=DOID:305!3.75e-15!106;DOID:0050687!1.82e-11!143;DOID:7!4.50e-10!39;DOID:162!1.31e-09!235;DOID:14566!2.65e-09!239;DOID:3111!2.09e-07!1;DOID:3603!2.09e-07!1;DOID:0050619!4.51e-07!1;DOID:1357!4.51e-07!1;DOID:0060085!7.15e-07!1;DOID:3165!7.15e-07!1;DOID:0060121!7.15e-07!1;DOID:2438!7.15e-07!1;DOID:4418!7.15e-07!1;DOID:3112!8.02e-07!1 | |ontology_enrichment_disease=DOID:305!3.75e-15!106;DOID:0050687!1.82e-11!143;DOID:7!4.50e-10!39;DOID:162!1.31e-09!235;DOID:14566!2.65e-09!239;DOID:3111!2.09e-07!1;DOID:3603!2.09e-07!1;DOID:0050619!4.51e-07!1;DOID:1357!4.51e-07!1;DOID:0060085!7.15e-07!1;DOID:3165!7.15e-07!1;DOID:0060121!7.15e-07!1;DOID:2438!7.15e-07!1;DOID:4418!7.15e-07!1;DOID:3112!8.02e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3111;7.48e-30;1!DOID:3603;7.48e-30;1!DOID:4929;1.66e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,7.48e-30,1;DOID:3603,7.48e-30,1;DOID:4929,1.78e-15,2;DOID:305,7.66e-10,106;DOID:0050687,2.48e-07,143 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002294;1.99e-64;7!UBERON:0001173;1.99e-64;7!UBERON:0002394;2.02e-63;4!UBERON:0003928;2.02e-63;4!UBERON:0004913;1.54e-29;1!UBERON:0003703;1.54e-29;1!UBERON:0001174;1.54e-29;1!UBERON:0004914;1.54e-29;1!UBERON:0000058;5.77e-26;10!UBERON:0002423;1.47e-18;25!UBERON:0002110;7.42e-11;3!UBERON:0002114;8.57e-11;2!UBERON:0010077;2.03e-08;4!UBERON:0005389;2.03e-08;4!UBERON:0000484;2.03e-08;4!UBERON:0000965;2.03e-08;4!UBERON:0001803;2.03e-08;4!UBERON:0002108;5.54e-07;4 | |||
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|short_description=p@chr3:98633389..98633415,+ | |short_description=p@chr3:98633389..98633415,+ | ||
}} | }} |
Latest revision as of 00:09, 30 July 2015
Short description: | p@chr3:98633389..98633415, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98633389..98633415, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 1.33e-15 | 2 |
crystallin accumulating cell | 1.96e-08 | 4 |
vertebrate lens cell | 1.96e-08 | 4 |
lens epithelial cell | 1.96e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
biliary system | 3.21e-50 | 9 |
biliary tree | 3.21e-50 | 9 |
biliary bud | 3.21e-50 | 9 |
bile duct | 1.53e-42 | 6 |
digestive system duct | 1.53e-42 | 6 |
hepatopancreatic ampulla | 1.78e-29 | 1 |
extrahepatic bile duct | 1.78e-29 | 1 |
common bile duct | 1.78e-29 | 1 |
duodenal papilla | 1.78e-29 | 1 |
epithelium of foregut-midgut junction | 1.57e-18 | 25 |
anatomical boundary | 1.57e-18 | 25 |
hepatobiliary system | 1.57e-18 | 25 |
foregut-midgut junction | 1.57e-18 | 25 |
septum transversum | 1.57e-18 | 25 |
duct | 4.95e-14 | 19 |
hepatic diverticulum | 3.20e-12 | 22 |
liver primordium | 3.20e-12 | 22 |
digestive tract diverticulum | 1.01e-11 | 23 |
gallbladder | 7.42e-11 | 3 |
gall bladder primordium | 7.42e-11 | 3 |
epithelial sac | 7.67e-11 | 25 |
duodenum | 8.99e-11 | 2 |
sac | 1.88e-10 | 26 |
endo-epithelium | 6.22e-09 | 82 |
primordium | 7.33e-09 | 160 |
gut epithelium | 7.42e-09 | 54 |
cuboidal epithelium | 1.96e-08 | 4 |
transparent eye structure | 1.96e-08 | 4 |
simple cuboidal epithelium | 1.96e-08 | 4 |
cranial placode | 1.96e-08 | 4 |
lens of camera-type eye | 1.96e-08 | 4 |
epithelium of lens | 1.96e-08 | 4 |
lens placode | 1.96e-08 | 4 |
lens vesicle | 1.96e-08 | 4 |
small intestine | 5.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 7.48e-30 | 1 |
mucinous cystadenocarcinoma | 7.48e-30 | 1 |
tubular adenocarcinoma | 1.78e-15 | 2 |
carcinoma | 7.66e-10 | 106 |
cell type cancer | 2.48e-07 | 143 |