FFCP PHASE1:Hg19::chr4:169552111..169552151,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:169552111..169552151,+ | |||
|description=CAGE_peak_at_chr4:169552111..169552151,+ | |description=CAGE_peak_at_chr4:169552111..169552151,+ | ||
|id=chr4:169552111..169552151,+ | |id=chr4:169552111..169552151,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.72e-16!180;CL:0000548!9.96e-14!679;CL:0000004!9.96e-14!679;CL:0000255!9.96e-14!679;CL:0000012!2.43e-13!682;CL:0002371!6.41e-13!591;CL:0000144!3.27e-11!625;CL:0000359!6.26e-10!32;CL:0000680!2.36e-09!57;CL:0000056!2.36e-09!57;CL:0000355!2.36e-09!57;CL:0000003!6.51e-09!722;CL:0000183!4.09e-08!59;CL:0000187!1.31e-07!54;CL:0000220!2.35e-07!246;CL:0002321!4.17e-07!248;CL:0000192!6.20e-07!42;CL:0000514!6.20e-07!42 | |ontology_enrichment_celltype=CL:0000055!6.72e-16!180;CL:0000548!9.96e-14!679;CL:0000004!9.96e-14!679;CL:0000255!9.96e-14!679;CL:0000012!2.43e-13!682;CL:0002371!6.41e-13!591;CL:0000144!3.27e-11!625;CL:0000359!6.26e-10!32;CL:0000680!2.36e-09!57;CL:0000056!2.36e-09!57;CL:0000355!2.36e-09!57;CL:0000003!6.51e-09!722;CL:0000183!4.09e-08!59;CL:0000187!1.31e-07!54;CL:0000220!2.35e-07!246;CL:0002321!4.17e-07!248;CL:0000192!6.20e-07!42;CL:0000514!6.20e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.16e-10;32!CL:0000128;1.90e-10;7!CL:0000126;1.90e-10;7!CL:0000127;1.90e-10;7!CL:0002594;1.89e-08;4!CL:0002166;2.17e-08;3!CL:0000515;4.22e-08;3!CL:0000064;4.79e-08;3!CL:0000067;4.79e-08;3!CL:0005012;4.79e-08;3!CL:0002304;4.79e-08;3!CL:0000346;2.14e-07;3!CL:1000428;2.14e-07;3!CL:0002603;3.80e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,6.61e-11,32;CL:0000680,1.35e-10,58;CL:0000056,1.35e-10,58;CL:0000355,1.35e-10,58;CL:0000128,1.50e-10,7;CL:0000126,1.50e-10,7;CL:0000127,1.50e-10,7;CL:0002453,1.50e-10,7;CL:0002594,1.11e-08,4;CL:0002166,2.14e-08,3;CL:0000064,4.72e-08,3;CL:0000067,4.72e-08,3;CL:0005012,4.72e-08,3;CL:0002304,4.72e-08,3;CL:0000187,1.10e-07,55;CL:0000346,2.03e-07,3;CL:1000428,2.03e-07,3;CL:0000192,3.21e-07,43;CL:0000514,3.21e-07,43;CL:0002321,3.65e-07,250;CL:0000062,3.94e-07,11;CL:0000375,3.94e-07,11;CL:0000335,3.94e-07,11;CL:0002603,4.04e-07,3;CL:0000221,8.21e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000335;4.42e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.74e-12!82;UBERON:0000914!2.00e-09!83;UBERON:0002329!2.00e-09!83;UBERON:0003077!2.00e-09!83;UBERON:0003059!2.00e-09!83;UBERON:0007282!2.00e-09!83;UBERON:0009618!2.00e-09!83;UBERON:0007285!2.00e-09!83;UBERON:0007625!7.49e-09!11;UBERON:0004290!1.07e-08!70;UBERON:0001134!1.68e-08!61;UBERON:0002036!1.68e-08!61;UBERON:0003082!1.68e-08!61;UBERON:0001637!6.52e-08!42;UBERON:0003509!6.52e-08!42;UBERON:0004572!6.52e-08!42;UBERON:0002385!6.93e-08!63;UBERON:0001015!6.93e-08!63;UBERON:0000383!6.93e-08!63;UBERON:0000468!5.14e-07!659 | |ontology_enrichment_uberon=UBERON:0000486!2.74e-12!82;UBERON:0000914!2.00e-09!83;UBERON:0002329!2.00e-09!83;UBERON:0003077!2.00e-09!83;UBERON:0003059!2.00e-09!83;UBERON:0007282!2.00e-09!83;UBERON:0009618!2.00e-09!83;UBERON:0007285!2.00e-09!83;UBERON:0007625!7.49e-09!11;UBERON:0004290!1.07e-08!70;UBERON:0001134!1.68e-08!61;UBERON:0002036!1.68e-08!61;UBERON:0003082!1.68e-08!61;UBERON:0001637!6.52e-08!42;UBERON:0003509!6.52e-08!42;UBERON:0004572!6.52e-08!42;UBERON:0002385!6.93e-08!63;UBERON:0001015!6.93e-08!63;UBERON:0000383!6.93e-08!63;UBERON:0000468!5.14e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0010371;2.31e-12;31!UBERON:0000488;5.50e-10;4!UBERON:0007625;2.29e-09;11!UBERON:0001310;1.89e-08;4!UBERON:0001778;4.79e-08;3!UBERON:0001775;4.79e-08;3!UBERON:0000412;2.14e-07;3!UBERON:0001992;2.14e-07;3!UBERON:0001801;4.28e-07;14!UBERON:0006876;4.91e-07;11!UBERON:0000365;9.38e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,8.63e-15,83;UBERON:0007503,2.83e-11,78;UBERON:0002329,7.50e-11,71;UBERON:0003059,7.50e-11,71;UBERON:0007282,7.50e-11,71;UBERON:0004290,7.50e-11,71;UBERON:0009618,7.50e-11,71;UBERON:0003077,1.29e-10,72;UBERON:0007285,1.29e-10,72;UBERON:0007524,2.19e-10,73;UBERON:0000488,4.54e-10,4;UBERON:0001134,1.44e-09,62;UBERON:0002036,1.44e-09,62;UBERON:0003082,1.44e-09,62;UBERON:0007625,2.31e-09,11;UBERON:0002385,4.16e-09,64;UBERON:0001015,4.16e-09,64;UBERON:0000383,4.16e-09,64;UBERON:0001310,1.11e-08,4;UBERON:0001778,4.72e-08,3;UBERON:0001775,4.72e-08,3;UBERON:0005085,8.33e-08,31;UBERON:0000119,9.42e-08,309;UBERON:0000412,2.03e-07,3;UBERON:0001992,2.03e-07,3;UBERON:0006876,3.60e-07,11;UBERON:0001801,4.29e-07,14;UBERON:0000483,7.64e-07,306;UBERON:0005256,8.24e-07,122 | |||
|phase1_expression=1.45342703416445,1.71280419112787,0.422863212287913,0,0.893922188854576,0,0,0,0,0.737201809504527,0.697801167972428,0.436882744260345,1.58260186937072,0,0,1.34465029290355,1.80808358407193,1.46062018077475,3.90346239032406,2.58554221961255,1.22400414746552,2.5076377718247,0.286235987131057,1.36874425072884,1.75759695432724,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0.306083892370903,0.641858054152187,0,0,0,0,0.870627715885752,0,0.622822248995575,0,0,0,0,1.10483290796269,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0.795285947051099,0,5.0103453096956,5.5432349365641,3.60122621341817,0,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,1.49091585508596,2.40597972162702,0.926864265692532,0,0.354668382198357,0.560677600142307,3.20246987189115,3.20667812942308,0,0,0,0.605429710579726,0.576175924479999,0,0,0,0,0,0,0.140450806702248,0,0,0,2.37600571456411,1.48360157567134,0,0,0,0,0,0,1.22595118319608,0.45071417671979,0.340296549480063,0.89694817844431,0.640672166455702,0,0.300091096084402,0.103052529238439,0.515281080091258,0.18611685633159,0.168776332241266,0.292311015483596,0.504867548488229,0.736399189138395,0.161646056818812,1.06502877754984,0.201504196455281,0.67824236924195,1.73934767846967,8.72787585890671,0.573609190778008,0,0,0,0,0,0,7.8224766164908,2.57296375277154,1.38134921352481,0.464367928031979,0,0.473227200159376,0.505754070234305,0.723033089650446,0.330881918197182,0.653638332277218,0.71181185733329,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,0,2.74508496477641,2.74375713521564,0,0.100528972411631,0.277765335475589,0,0,1.44331342025273,0.579652024875384,2.11335649624479,0,0.462985512576611,0,0,0,0,0,0,5.62403003920662,20.8297838966586,12.3344334600876,0.268675568108545,0,0,0,0,2.90259361757081,0.576479813667846,0.6312121671319,0,0,0,0,0,0,0,6.16720963899484,0.87192013766656,7.1871520104531,0.904902010304444,0,0,0.531876233169741,2.08014873822732,0,1.41849132023278,0.532844358032199,0.142977993658148,0,0.823240336780769,0.325736184293735,0,0,0,0,0.299918973546171,0,0,0,2.39624855491583,0,0,11.1481606134036,2.4657158706046,10.3855358679139,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.535286966391485,0.315404830067869,0.937131319941706,2.40756879782175,0,0,2.65690239414175,1.47495334833363,0.0868836144680828,0.979005787313703,0.343143423810856,0.206768026122887,0,0,0,0,0,1.24053903909388,3.52962538562544,0.561320188866147,0.256278298511402,1.53512174720011,0.804269605718038,0,0.616838775210622,0.355123450626254,0.410635780069046,0,0.232420756919918,0,6.6167135200084,0,0,0,0,0.902399225814824,0.616122696835318,0,0,1.16106791782163,0,0,0.215915916102139,1.54227252690289,0,1.00337954770971,0,0,0,0,0,0.256450125116389,0.656029291399411,0.325378394664303,0,9.15694648183434,11.3863109890411,8.61398306994258,1.30012049207304,0,1.16004861950546,0.154048617114644,0.15350367472613,2.06754858726796,0.107420244868274,0,0.255679882248303,4.71869788927708,1.81813406897076,0.384380134730212,0.382838137483752,0.10115778085555,0.464845549297286,0.62962469366128,1.3940745403212,0,0.532306030317022,0.869932992075073,0.55597265731176,0.715624433709956,1.86079184679834,3.16379424718726,0.190630193923825,0,0.42793898803392,0,0,0.539617372749944,0,0,1.01091240786658,1.58510321173008,0,0,0,1.05650146756755,0.136499911407986,0,0,0,1.99031692572366,0.438450885253763,0,0,1.21746226177622,1.54911749049875,2.81695602532241,0,0.196498082026242,1.78335525740625,0,0,0,0,0,0.192444225451024,0.670302275535787,0,0,2.15252686335615,1.68471475667626,1.33029046061003,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45444838005172,0,0,0.988551862620595,0,0,0,0,3.33410970433911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0.113942055847001,0,0,0,0,1.28236630762607,0.533034776018635,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,1.05226393590145,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0.174118413160805,0.17472666824203,0,0.774050650312681,0.438535902517113,0.739039113478883,0,0,0,0,0.397429223405979,0,0,0,0,0.19980960958213,0,0,0,0,0,1.64985824231757,0,0,0.305994652908965,0.577901179803038,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0.201550417460179,0.720599767084807,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0,0,0,0.314727528809989,0,0.896436696664224,0,0,0,0,0,0,0.326587360109409,2.39460383124975,0,2.21504428321048,0.113312091520126,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0.74988244777264,0,0,0.235265819698172,0,0,0.298509605773748,0,0,0,0.251567901752575,0,0,0,1.08806040407946,1.18284119991707,1.27437413730962,0.449803112163605,1.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| ||
|short_description=p@chr4:169552111..169552151,+ | |short_description=p@chr4:169552111..169552151,+ | ||
}} | }} |
Latest revision as of 03:12, 30 July 2015
Short description: | p@chr4:169552111..169552151, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:169552111..169552151, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 6.61e-11 | 32 |
muscle precursor cell | 1.35e-10 | 58 |
myoblast | 1.35e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.35e-10 | 58 |
oligodendrocyte | 1.50e-10 | 7 |
macroglial cell | 1.50e-10 | 7 |
astrocyte | 1.50e-10 | 7 |
oligodendrocyte precursor cell | 1.50e-10 | 7 |
smooth muscle cell of the umbilical artery | 1.11e-08 | 4 |
epithelial cell of Malassez | 2.14e-08 | 3 |
ciliated cell | 4.72e-08 | 3 |
ciliated epithelial cell | 4.72e-08 | 3 |
multi-ciliated epithelial cell | 4.72e-08 | 3 |
non-pigmented ciliary epithelial cell | 4.72e-08 | 3 |
muscle cell | 1.10e-07 | 55 |
hair follicle dermal papilla cell | 2.03e-07 | 3 |
stem cell of epidermis | 2.03e-07 | 3 |
smooth muscle cell | 3.21e-07 | 43 |
smooth muscle myoblast | 3.21e-07 | 43 |
embryonic cell | 3.65e-07 | 250 |
osteoblast | 3.94e-07 | 11 |
osteoprogenitor cell | 3.94e-07 | 11 |
mesenchyme condensation cell | 3.94e-07 | 11 |
astrocyte of the cerebellum | 4.04e-07 | 3 |
ectodermal cell | 8.21e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 8.63e-15 | 83 |
epithelial vesicle | 2.83e-11 | 78 |
somite | 7.50e-11 | 71 |
presomitic mesoderm | 7.50e-11 | 71 |
presumptive segmental plate | 7.50e-11 | 71 |
dermomyotome | 7.50e-11 | 71 |
trunk paraxial mesoderm | 7.50e-11 | 71 |
paraxial mesoderm | 1.29e-10 | 72 |
presumptive paraxial mesoderm | 1.29e-10 | 72 |
dense mesenchyme tissue | 2.19e-10 | 73 |
atypical epithelium | 4.54e-10 | 4 |
skeletal muscle tissue | 1.44e-09 | 62 |
striated muscle tissue | 1.44e-09 | 62 |
myotome | 1.44e-09 | 62 |
pigment epithelium of eye | 2.31e-09 | 11 |
muscle tissue | 4.16e-09 | 64 |
musculature | 4.16e-09 | 64 |
musculature of body | 4.16e-09 | 64 |
umbilical artery | 1.11e-08 | 4 |
ciliary epithelium | 4.72e-08 | 3 |
ciliary body | 4.72e-08 | 3 |
ectodermal placode | 8.33e-08 | 31 |
cell layer | 9.42e-08 | 309 |
dermal papilla | 2.03e-07 | 3 |
papillary layer of dermis | 2.03e-07 | 3 |
vasculature of organ | 3.60e-07 | 11 |
anterior segment of eyeball | 4.29e-07 | 14 |
epithelium | 7.64e-07 | 306 |
trunk mesenchyme | 8.24e-07 | 122 |