FFCP PHASE1:Hg19::chr6:36652270..36652284,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=141bp_to_BC037414_5end | |association_with_transcript=141bp_to_BC037414_5end | ||
|cluster_id=chr6:36652270..36652284,+ | |||
|coexpression_cluster_id=C672 | |coexpression_cluster_id=C672 | ||
|description=CAGE_peak_4_at_BC037414_5end | |description=CAGE_peak_4_at_BC037414_5end | ||
|id=chr6:36652270..36652284,+ | |id=chr6:36652270..36652284,+ | ||
|ontology_enrichment_celltype=CL:0002371!1.00e-15!591;CL:0000548!3.15e-15!679;CL:0000004!3.15e-15!679;CL:0000255!3.15e-15!679;CL:0000144!4.07e-15!625;CL:0000012!1.20e-14!682;CL:0002057!9.00e-14!42;CL:0000860!7.57e-13!45;CL:0000063!5.09e-12!578;CL:0002009!6.16e-11!65;CL:0002194!1.80e-10!63;CL:0000576!1.80e-10!63;CL:0000040!1.80e-10!63;CL:0000559!1.80e-10!63;CL:0000557!5.08e-10!71;CL:0000003!1.37e-09!722;CL:0000839!3.48e-09!70;CL:0000723!4.69e-09!436;CL:0000048!1.13e-08!430;CL:0000034!2.38e-08!444;CL:0000766!2.49e-08!76 | |ontology_enrichment_celltype=CL:0002371!1.00e-15!591;CL:0000548!3.15e-15!679;CL:0000004!3.15e-15!679;CL:0000255!3.15e-15!679;CL:0000144!4.07e-15!625;CL:0000012!1.20e-14!682;CL:0002057!9.00e-14!42;CL:0000860!7.57e-13!45;CL:0000063!5.09e-12!578;CL:0002009!6.16e-11!65;CL:0002194!1.80e-10!63;CL:0000576!1.80e-10!63;CL:0000040!1.80e-10!63;CL:0000559!1.80e-10!63;CL:0000557!5.08e-10!71;CL:0000003!1.37e-09!722;CL:0000839!3.48e-09!70;CL:0000723!4.69e-09!436;CL:0000048!1.13e-08!430;CL:0000034!2.38e-08!444;CL:0000766!2.49e-08!76 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.13e-33;33!CL:0002057;8.13e-33;33!CL:0000473;2.27e-25;39!CL:0000234;2.27e-25;39!CL:0000576;5.92e-15;48!CL:0000766;3.27e-09;69!CL:0000135;6.83e-08;3!CL:0000388;6.83e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.05e-27,42;CL:0002057,5.05e-27,42;CL:0000473,7.29e-25,48;CL:0000234,7.29e-25,48;CL:0002194,2.49e-20,59;CL:0000576,2.49e-20,59;CL:0000040,2.49e-20,59;CL:0000559,2.49e-20,59;CL:0002009,1.92e-19,61;CL:0000839,5.90e-19,66;CL:0000557,1.44e-18,67;CL:0000766,8.52e-17,72;CL:0000763,5.59e-09,108;CL:0000049,5.59e-09,108;CL:0000135,3.11e-08,3;CL:0000388,3.11e-08,3;CL:0000723,1.39e-07,433;CL:0002031,1.84e-07,120;CL:0000048,2.41e-07,427;CL:0002087,2.47e-07,115;CL:0000034,3.47e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.81e-20;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.76e-10!167;UBERON:0002371!3.45e-09!80;UBERON:0001474!1.01e-08!86;UBERON:0004765!1.38e-08!101;UBERON:0001434!1.38e-08!101;UBERON:0000926!4.17e-08!448;UBERON:0004120!4.17e-08!448;UBERON:0006603!4.17e-08!448;UBERON:0002405!9.57e-07!115 | |ontology_enrichment_uberon=UBERON:0002204!2.76e-10!167;UBERON:0002371!3.45e-09!80;UBERON:0001474!1.01e-08!86;UBERON:0004765!1.38e-08!101;UBERON:0001434!1.38e-08!101;UBERON:0000926!4.17e-08!448;UBERON:0004120!4.17e-08!448;UBERON:0006603!4.17e-08!448;UBERON:0002405!9.57e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;6.83e-08;3!UBERON:0000043;6.83e-08;3!UBERON:0007845;6.83e-08;3!UBERON:0003688;8.43e-07;6!UBERON:0002358;8.43e-07;6!UBERON:0003684;8.43e-07;6!UBERON:0001178;8.43e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.51e-15,76;UBERON:0001474,2.70e-15,82;UBERON:0002204,1.59e-13,167;UBERON:0004765,2.64e-13,90;UBERON:0002405,1.37e-12,93;UBERON:0001434,2.84e-12,100;UBERON:0000926,3.91e-12,315;UBERON:0004120,3.91e-12,315;UBERON:0006603,3.91e-12,315;UBERON:0002390,1.50e-10,98;UBERON:0003061,1.50e-10,98;UBERON:0003081,5.19e-10,203;UBERON:0002193,6.83e-10,108;UBERON:0007846,3.11e-08,3;UBERON:0000043,3.11e-08,3;UBERON:0007845,3.11e-08,3 | |||
|phase1_expression=0.726713517082227,1.49870366723688,0.422863212287913,2.00146596706261,1.78784437770915,1.74467704820074,2.53299878168311,0,0.261185628199839,0.245733936501509,1.39560233594486,0,0,0,0.331397375727916,2.01697543935533,1.80808358407193,3.65155045193687,0,0,0,0.313454721478088,0,0,0.125542639594803,0.152826811495903,0.0821005894499457,0.0787107813136792,0.786728553697808,0,0.464448369948228,0,1.50602959389125,1.84877005083394,0.154934401160603,0,0,0,0.802177789880567,0.434021741431704,0,0,0,0.726991193897824,1.88937971844405,1.4555043671269,0.929716147622738,0.822335776043652,2.16794459626573,7.48000220037591,5.12321413058201,2.60130452877444,1.72372840368309,1.93645405075148,0,2.07066573496865,2.18324920046277,1.34834090667051,5.20342617030534,0.962787081228281,5.11469700639233,2.96866170168044,3.19141852194611,2.55734850319616,1.7412554317715,1.70215567407342,0,5.52747063564835,3.12889751052121,3.9093992046921,2.42159801053347,0.368277635987565,1.89877432464531,0.422510572623884,0.425208599930087,0,0.336985893439485,0,0.48217676009124,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0.260118695119756,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0,0,0,1.01392563272577,0,0.486634870302636,0.189069634328136,0.221729397462564,0.087834785693126,0,0.364295288292542,0.741568885568859,0.649094787309367,0.870648686496336,2.12732736830184,0,0,0,0,0,0,0,0.419499436209906,1.10047216776027,0.208994966536811,0.516833518338658,0.35576626268671,0.33472061276467,0,0,0.732186172644509,0,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0.872188104285069,1.49091585508596,0.12663051166458,0.132409180813219,0.573673241497627,0.354668382198357,1.68203280042692,0,1.72667283892012,0,0.538842688278752,0.163461903113459,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0.448346041655403,0.469737994575059,0.485618833104395,0,0,0.122834317311768,0.206651562351531,2.37600571456411,0.494533858557114,1.82032272387605,0,0.168336113954066,0,0,0.877955241761676,0.612975591598039,0.901428353439581,0.113432183160021,0.358779271377724,0.640672166455702,0,0.900273288253207,0.206105058476878,0.772921620136887,0.18611685633159,0,0.584622030967192,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.201504196455281,0,0.773043412653187,0.545492241181669,0.286804595389004,0.121973706129595,0,0,0.310983165046111,0,0,0,0.643240938192885,0,0.928735856063958,2.16563844500876,0.236613600079688,0.168584690078102,0,0,0.217879444092406,0.237270619111097,0,0.196221465125346,0,1.4763109092493,0,0.4115740113314,0,0,0.982827216677626,0,0,0,0,0.219500570817251,2.24803506515239,0.100528972411631,0.925884451585296,0.977424915930974,0,0,0.115930404975077,0.234817388471643,0.721832238805369,0,0.761016608938393,0,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0.671928512795438,0.425325291727159,0.179117045405697,0.581267877027924,0,0,0.088048434013226,0,1.00883967391873,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0,0,0,0.1466765716419,0.258543431515556,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,0.428933980974443,0,1.64648067356154,0,0.355391948742546,0,0.602878754119172,0.871533458600294,0.499864955910285,1.2162378064119,0.502257091432126,0,0.239624855491583,0,0,0,0,0.358121926479791,0,0.197030760201927,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0.12269149171914,0,0.542530047399471,0.415941723061614,2.49800584316026,1.26161932027148,0.234282829985426,0.601892199455438,4.5481500811197,0,0,0.184369168541703,0.60818530127658,0.195801157462741,0.686286847621712,0,0.647142602455851,0.533637789017222,0.909382714338778,3.32870879020994,0.907170879989041,0,0.306923946576125,1.68396056659844,1.02511319404561,2.04682899626681,0.965123526861645,0,0.154209693802656,0.355123450626254,0,1.03850885836724,0.464841513839837,0,1.60405176242628,2.30202472339741,0.459257792658427,0.728364672026868,2.22911505431021,0,0.385076685522074,0,1.46139224653261,0.211103257785751,0,0.680374821106063,0.215915916102139,0,0.270946437543853,0.501689773854853,0.764628819135115,0,0,0,0,1.02580050046556,0,0,0.103041011647722,0,0.165018999841176,0.574265537996172,0.650060246036521,0,0.290012154876366,0.154048617114644,0.307007349452259,0.689182862422653,0.322260734604821,0.290033387828457,0.170453254832202,0,0.661139661443912,0.384380134730212,0.510450849978337,1.4162089319777,3.71876439437829,0.31481234683064,0,0,0.532306030317022,0,0,0.143124886741991,0,0,1.33441135746677,1.27948895655667,0,0,0,0.539617372749944,0.54907405947211,0.942499218765491,0,0,0.421258456238981,0.48763373908959,0.487426979262569,0,0.272999822815972,1.83827061539827,2.26016233240486,0,0.66343897524122,0,2.89387767133344,0,0.202910376962704,0.92947049429925,0,0.143411352204052,0.294747123039363,0,0.354761064070598,1.05553817648832,0,0.758946347531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| ||
|short_description=p4@BC037414 | |short_description=p4@BC037414 | ||
}} | }} |
Latest revision as of 01:10, 31 July 2015
Short description: | p4@BC037414 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BC037414_5end |
Coexpression cluster: | C672_CD14_Smooth_Mesenchymal_Placental_Fibroblast_mesenchymal_Alveolar |
Association with transcript: | 141bp_to_BC037414_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.05e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.05e-27 | 42 |
defensive cell | 7.29e-25 | 48 |
phagocyte | 7.29e-25 | 48 |
monopoietic cell | 2.49e-20 | 59 |
monocyte | 2.49e-20 | 59 |
monoblast | 2.49e-20 | 59 |
promonocyte | 2.49e-20 | 59 |
macrophage dendritic cell progenitor | 1.92e-19 | 61 |
myeloid lineage restricted progenitor cell | 5.90e-19 | 66 |
granulocyte monocyte progenitor cell | 1.44e-18 | 67 |
myeloid leukocyte | 8.52e-17 | 72 |
myeloid cell | 5.59e-09 | 108 |
common myeloid progenitor | 5.59e-09 | 108 |
fibrocyte | 3.11e-08 | 3 |
tendon cell | 3.11e-08 | 3 |
somatic stem cell | 1.39e-07 | 433 |
hematopoietic lineage restricted progenitor cell | 1.84e-07 | 120 |
multi fate stem cell | 2.41e-07 | 427 |
nongranular leukocyte | 2.47e-07 | 115 |
stem cell | 3.47e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.51e-15 | 76 |
bone element | 2.70e-15 | 82 |
musculoskeletal system | 1.59e-13 | 167 |
skeletal element | 2.64e-13 | 90 |
immune system | 1.37e-12 | 93 |
skeletal system | 2.84e-12 | 100 |
mesoderm | 3.91e-12 | 315 |
mesoderm-derived structure | 3.91e-12 | 315 |
presumptive mesoderm | 3.91e-12 | 315 |
hematopoietic system | 1.50e-10 | 98 |
blood island | 1.50e-10 | 98 |
lateral plate mesoderm | 5.19e-10 | 203 |
hemolymphoid system | 6.83e-10 | 108 |
dense regular connective tissue | 3.11e-08 | 3 |
tendon | 3.11e-08 | 3 |
regular connective tissue | 3.11e-08 | 3 |