FFCP PHASE1:Hg19::chr7:142498877..142498900,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=152bp_to_AJ568018_5end | |association_with_transcript=152bp_to_AJ568018_5end | ||
|cluster_id=chr7:142498877..142498900,+ | |||
|coexpression_cluster_id=C419 | |||
|description=CAGE_peak_2_at_AJ568018_5end | |description=CAGE_peak_2_at_AJ568018_5end | ||
|id=chr7:142498877..142498900,+ | |id=chr7:142498877..142498900,+ | ||
|ontology_enrichment_celltype=CL:0000084!3.56e-34!25;CL:0000827!3.56e-34!25;CL:0000542!2.78e-31!53;CL:0000051!2.78e-31!53;CL:0000791!3.05e-30!18;CL:0000789!3.05e-30!18;CL:0002420!3.05e-30!18;CL:0002419!3.05e-30!18;CL:0000790!3.05e-30!18;CL:0000838!3.18e-30!52;CL:0000625!3.73e-19!11;CL:0002087!1.16e-12!119;CL:0000624!1.93e-11!6;CL:0000738!2.87e-11!140;CL:0002031!9.94e-09!124;CL:0000037!3.05e-08!172;CL:0000566!3.05e-08!172;CL:0000988!3.35e-08!182 | |ontology_enrichment_celltype=CL:0000084!3.56e-34!25;CL:0000827!3.56e-34!25;CL:0000542!2.78e-31!53;CL:0000051!2.78e-31!53;CL:0000791!3.05e-30!18;CL:0000789!3.05e-30!18;CL:0002420!3.05e-30!18;CL:0002419!3.05e-30!18;CL:0000790!3.05e-30!18;CL:0000838!3.18e-30!52;CL:0000625!3.73e-19!11;CL:0002087!1.16e-12!119;CL:0000624!1.93e-11!6;CL:0000738!2.87e-11!140;CL:0002031!9.94e-09!124;CL:0000037!3.05e-08!172;CL:0000566!3.05e-08!172;CL:0000988!3.35e-08!182 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.26e-54;18!CL:0000789;2.26e-54;18!CL:0002419;2.26e-54;18!CL:0000084;1.57e-48;25!CL:0000625;1.60e-37;11!CL:0000624;8.12e-22;6!CL:0000542;9.95e-18;53!CL:0000898;9.90e-12;3!CL:0000815;2.16e-08;2!CL:0000792;2.16e-08;2!CL:0002677;2.16e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.84e-54,18;CL:0000789,1.84e-54,18;CL:0002420,1.84e-54,18;CL:0002419,1.84e-54,18;CL:0000790,1.84e-54,18;CL:0000084,1.33e-48,25;CL:0000827,1.33e-48,25;CL:0000625,1.19e-37,11;CL:0000838,4.57e-31,52;CL:0000542,2.28e-30,53;CL:0000051,2.28e-30,53;CL:0000624,8.79e-22,6;CL:0002087,5.94e-12,115;CL:0000898,7.54e-12,3;CL:0000738,2.41e-10,136;CL:0002031,4.02e-10,120;CL:0000815,1.44e-08,2;CL:0000792,1.44e-08,2;CL:0002677,1.44e-08,2;CL:0000037,2.59e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;2.26e-54;18!CL:0000051;9.95e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.73e-16!15;UBERON:0000179!3.73e-16!15;UBERON:0000463!3.73e-16!15;UBERON:0004177!1.18e-08!7;UBERON:0002370!4.24e-08!4;UBERON:0005058!4.24e-08!4;UBERON:0009113!4.24e-08!4;UBERON:0003295!4.24e-08!4;UBERON:0005562!4.24e-08!4;UBERON:0003351!7.97e-08!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.85e-09;2!UBERON:0005058;3.85e-09;2!UBERON:0009113;3.85e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003351,3.27e-10,6;UBERON:0002370,2.12e-09,4;UBERON:0005058,2.12e-09,4;UBERON:0009113,2.12e-09,4;UBERON:0003295,2.12e-09,4;UBERON:0005562,2.12e-09,4 | |||
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| ||
|short_description=p2@AJ568018 | |short_description=p2@AJ568018 | ||
}} | }} |
Latest revision as of 06:58, 31 July 2015
Short description: | p2@AJ568018 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AJ568018_5end |
Coexpression cluster: | C419_acute_chronic_thymus_xeroderma_Burkitt_Hodgkin_CD4 |
Association with transcript: | 152bp_to_AJ568018_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.84e-54 | 18 |
alpha-beta T cell | 1.84e-54 | 18 |
immature T cell | 1.84e-54 | 18 |
mature T cell | 1.84e-54 | 18 |
immature alpha-beta T cell | 1.84e-54 | 18 |
T cell | 1.33e-48 | 25 |
pro-T cell | 1.33e-48 | 25 |
CD8-positive, alpha-beta T cell | 1.19e-37 | 11 |
lymphoid lineage restricted progenitor cell | 4.57e-31 | 52 |
lymphocyte | 2.28e-30 | 53 |
common lymphoid progenitor | 2.28e-30 | 53 |
CD4-positive, alpha-beta T cell | 8.79e-22 | 6 |
nongranular leukocyte | 5.94e-12 | 115 |
naive T cell | 7.54e-12 | 3 |
leukocyte | 2.41e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 4.02e-10 | 120 |
regulatory T cell | 1.44e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.44e-08 | 2 |
naive regulatory T cell | 1.44e-08 | 2 |
hematopoietic stem cell | 2.59e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
pharyngeal epithelium | 3.27e-10 | 6 |
thymus | 2.12e-09 | 4 |
hemolymphoid system gland | 2.12e-09 | 4 |
thymic region | 2.12e-09 | 4 |
pharyngeal gland | 2.12e-09 | 4 |
thymus primordium | 2.12e-09 | 4 |