FFCP PHASE1:Hg19::chr7:94057128..94057140,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:94057128..94057140,+ | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_at_chr7:94057128..94057140,+ | |description=CAGE_peak_at_chr7:94057128..94057140,+ | ||
|id=chr7:94057128..94057140,+ | |id=chr7:94057128..94057140,+ | ||
|ontology_enrichment_celltype=CL:0002334;2.42e-11;12!CL:0002620;2.85e-09;23!CL:0000057;2.29e-08;73!CL:0000134;1.13e-07;55!CL:0000499;1.50e-07;28!CL:0000153;1.97e-07;9!CL:0000447;1.97e-07;9!CL:0002320;9.55e-07;188 | |ontology_enrichment_celltype=CL:0000055!1.65e-40!180;CL:0000057!1.54e-26!75;CL:0000680!1.64e-18!57;CL:0000056!1.64e-18!57;CL:0000355!1.64e-18!57;CL:0000187!1.90e-18!54;CL:0000183!1.52e-17!59;CL:0000393!2.66e-17!60;CL:0000211!2.66e-17!60;CL:0000192!1.96e-16!42;CL:0000514!1.96e-16!42;CL:0000048!1.21e-14!430;CL:0000723!1.08e-13!436;CL:0000034!1.74e-12!444;CL:0000359!2.20e-12!32;CL:0002620!4.89e-09!23;CL:0002334!7.25e-09!12;CL:0000499!4.58e-07!27;CL:0002494!4.69e-07!16 | ||
| | |ontology_enrichment_celltype_v019=CL:0002334;2.42e-11;12!CL:0002620;2.85e-09;23!CL:0000057;2.29e-08;73!CL:0000134;1.13e-07;55!CL:0000499;1.50e-07;28!CL:0000153;1.97e-07;9!CL:0000447;1.97e-07;9!CL:0002320;9.55e-07;188 | ||
|ontology_enrichment_disease=DOID:17;7.11e-07;5!DOID:450;7.11e-07;5!DOID:66;7.11e-07;5!DOID:423;7.11e-07;5!DOID:0080000;7.11e-07;5!DOID:11722;7.11e-07;5 | |ontology_enrichment_celltype_v019_2=CL:0000057,1.48e-21,76;CL:0000048,1.49e-13,427;CL:0000723,6.48e-13,433;CL:0000034,4.26e-12,441;CL:0002334,2.95e-11,12;CL:0002620,3.88e-09,23;CL:0000192,1.73e-08,43;CL:0000514,1.73e-08,43;CL:0002320,4.34e-08,361;CL:0000187,4.97e-08,55;CL:0000134,6.17e-08,354;CL:0000680,6.74e-08,58;CL:0000056,6.74e-08,58;CL:0000355,6.74e-08,58;CL:0000499,1.01e-07,28;CL:0000153,1.91e-07,9;CL:0000447,1.91e-07,9 | ||
|ontology_enrichment_uberon=UBERON:0004457;5.22e-09;9!UBERON:0000042;5.22e-09;9!UBERON:0003688;2.73e-08;6!UBERON:0002358;2.73e-08;6!UBERON:0003684;2.73e-08;6!UBERON:0001178;2.73e-08;6!UBERON:0002384;2.27e-07;198 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.11e-07;5!DOID:450;7.11e-07;5!DOID:66;7.11e-07;5!DOID:423;7.11e-07;5!DOID:0080000;7.11e-07;5!DOID:11722;7.11e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,7.77e-07,5;DOID:450,7.77e-07,5;DOID:66,7.77e-07,5;DOID:423,7.77e-07,5;DOID:0080000,7.77e-07,5;DOID:11722,7.77e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002385!4.39e-19!63;UBERON:0001015!4.39e-19!63;UBERON:0000383!4.39e-19!63;UBERON:0000914!5.28e-19!83;UBERON:0002329!5.28e-19!83;UBERON:0003077!5.28e-19!83;UBERON:0003059!5.28e-19!83;UBERON:0007282!5.28e-19!83;UBERON:0009618!5.28e-19!83;UBERON:0007285!5.28e-19!83;UBERON:0001134!8.87e-19!61;UBERON:0002036!8.87e-19!61;UBERON:0003082!8.87e-19!61;UBERON:0004290!1.05e-17!70;UBERON:0000486!3.54e-14!82;UBERON:0005256!2.36e-11!143;UBERON:0004872!5.89e-10!84;UBERON:0001637!3.65e-09!42;UBERON:0003509!3.65e-09!42;UBERON:0004572!3.65e-09!42;UBERON:0004573!1.95e-08!33;UBERON:0004571!1.95e-08!33;UBERON:0002100!4.30e-08!216;UBERON:0001013!2.33e-07!14;UBERON:0002199!3.93e-07!45;UBERON:0002416!3.93e-07!45;UBERON:0000948!5.75e-07!24;UBERON:0005498!5.75e-07!24;UBERON:0004140!5.75e-07!24;UBERON:0009881!5.75e-07!24;UBERON:0004141!5.75e-07!24;UBERON:0003084!5.75e-07!24;UBERON:0007005!5.75e-07!24;UBERON:0004139!5.75e-07!24;UBERON:0004291!5.75e-07!24;UBERON:0002049!9.31e-07!79;UBERON:0007798!9.31e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.22e-09;9!UBERON:0000042;5.22e-09;9!UBERON:0003688;2.73e-08;6!UBERON:0002358;2.73e-08;6!UBERON:0003684;2.73e-08;6!UBERON:0001178;2.73e-08;6!UBERON:0002384;2.27e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,5.83e-09,46;UBERON:0002416,5.83e-09,46;UBERON:0001134,9.31e-09,62;UBERON:0002036,9.31e-09,62;UBERON:0003082,9.31e-09,62;UBERON:0002384,1.98e-08,371;UBERON:0002385,3.06e-08,64;UBERON:0001015,3.06e-08,64;UBERON:0000383,3.06e-08,64;UBERON:0003688,4.06e-08,6;UBERON:0002358,4.06e-08,6;UBERON:0003684,4.06e-08,6;UBERON:0001178,4.06e-08,6;UBERON:0007524,7.41e-08,73;UBERON:0002097,9.91e-08,41;UBERON:0002329,1.89e-07,71;UBERON:0003059,1.89e-07,71;UBERON:0007282,1.89e-07,71;UBERON:0004290,1.89e-07,71;UBERON:0009618,1.89e-07,71;UBERON:0003077,3.06e-07,72;UBERON:0007285,3.06e-07,72 | |||
|phase1_expression=3.81524596468169,7.92171938396638,3.38290569830331,3.00219895059391,3.5756887554183,2.61701557230111,7.59899634504932,0.631719873426831,0.261185628199839,0,0,0.218441372130172,1.05506791291381,0.37129905888014,0.331397375727916,4.70627602516243,1.80808358407193,1.46062018077475,1.46379839637152,0.61560529038394,0.204000691244253,1.56727360739044,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.895037932904712,5.42158728576849,5.0133791063589,5.79386075843295,8.74814541756209,8.27279279514481,0.283604451492204,0,0.263504357079378,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,1.13967460498122,0.926864265692532,8.3182620017156,1.41867352879343,1.68203280042692,4.2699598291882,2.71334303258876,0.933633106199299,0.808264032418128,0.817309515567294,2.11900398702904,2.88087962239999,0.234321431833797,0,0,0.448346041655403,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,0.826606249406124,7.12801714369232,7.41800787835671,0.910161361938026,1.43723628363248,0.336672227908132,0.375355559615893,0.554128230968366,0.877955241761676,5.21029252858333,2.85452311922534,1.92834711372036,5.38168907066586,5.12537733164562,2.33125091275518,3.90118424909723,2.06105058476878,4.89517026086695,3.53622027030021,5.90717162844432,3.21542117031955,3.78650661366172,2.57739716198438,2.42469085228218,6.03516307278244,1.0075209822764,1.18692414617341,0,0,0,0,0,0,0,0,0,0,4.5026865673502,0,3.71494342425583,7.94067429836544,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,2.94017422771084,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.87192013766656,0.66004457238855,1.80980402060889,0,1.690605505112,1.59562869950922,2.08014873822732,0.257207374262142,0,0.532844358032199,3.57444984145369,3.25572963234866,1.64648067356154,0.977208552881205,2.48774364119782,0,0.602878754119172,0,0,0,0,0,2.39624855491583,1.14861935834114,0,0.868687840005475,1.02738161275192,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.736148950314839,1.00034104211935,0,9.56665963041713,17.8428988797162,11.1968714674094,2.34282829985426,1.80567659836631,2.27407504055985,0,1.99267679560631,0.368738337083406,0.695068915744663,0.979005787313703,3.43143423810856,0,0,0,0.303127571446259,6.65741758041988,0.604780586659361,4.71404834855676,2.76231551918512,8.98112302185835,5.12556597022804,3.07024349440022,6.75586468803151,4.45254199334973,1.54209693802656,2.84098760501003,0.164254312027618,2.07701771673448,1.16210378459959,0,0,0,1.83703117063371,1.63882051206045,3.67148361886388,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0.290012154876366,0.308097234229289,0.767518373630648,0.689182862422653,1.39646318328756,1.59518363305651,0.681813019328807,1.33548053470106,0,0,0,0,1.39453664789186,11.9628691795643,0,0.924100740528266,0.532306030317022,0.869932992075073,1.48259375283136,0.429374660225974,0,0.949138274156178,1.14378116354295,1.02359116524534,1.28381696410176,1.27281299170375,1.56989728039846,0.539617372749944,1.92175920815238,0.589062011728432,0.606547444719948,1.58510321173008,0.421258456238981,0.48763373908959,2.43713489631284,4.22600587027022,0.545999645631943,3.81794666275024,2.26016233240486,1.10273068709225,3.98063385144732,0.876901770507525,2.31510213706675,3.9353685122798,0.405820753925408,0.6196469961995,0.845086807596724,0.573645408816206,1.08073945114433,1.78335525740625,0.709522128141196,5.06658324714394,2.63435914367922,0.379473173765715,1.04980416073495,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0.296964680832639,0.614321404198464,0,0,0,0,0,0.996239941255349,0,0,0,0,4.3545542272653,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.923403102045565,0,0,0,0,0.31900115973192,0.824378340616761,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0.995261931078505,0,0.611030144933625,0,0,0,0,12.0386647094818,0,0,0,0,0.394584402849391,3.62972148145992,0.61214552326098,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,1.7472666824203,0.343972064943233,0,0,0,0.290967049465258,0,3.38971111170799,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0.203996435272644,0,0,0,0,0.859530882839914,0,1.11712960508902,0.229160424011684,0,0.199679000498991,0,0,0.604651252380536,2.52209918479682,0,0,0,0,0,0,0,0,0,0.137539436597234,0.83088067605837,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0,0,1.5256112259285,5.42999601753713,3.45688596480507,3.26587360109409,0,0,1.70388021785422,0,0,1.32506888912221,0,0,0,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|short_description=p@chr7:94057128..94057140,+ | |short_description=p@chr7:94057128..94057140,+ | ||
}} | }} |
Latest revision as of 12:46, 31 July 2015
Short description: | p@chr7:94057128..94057140, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:94057128..94057140, + |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.48e-21 | 76 |
multi fate stem cell | 1.49e-13 | 427 |
somatic stem cell | 6.48e-13 | 433 |
stem cell | 4.26e-12 | 441 |
preadipocyte | 2.95e-11 | 12 |
skin fibroblast | 3.88e-09 | 23 |
smooth muscle cell | 1.73e-08 | 43 |
smooth muscle myoblast | 1.73e-08 | 43 |
connective tissue cell | 4.34e-08 | 361 |
muscle cell | 4.97e-08 | 55 |
mesenchymal cell | 6.17e-08 | 354 |
muscle precursor cell | 6.74e-08 | 58 |
myoblast | 6.74e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.74e-08 | 58 |
stromal cell | 1.01e-07 | 28 |
GAG secreting cell | 1.91e-07 | 9 |
carbohydrate secreting cell | 1.91e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
integument | 5.83e-09 | 46 |
integumental system | 5.83e-09 | 46 |
skeletal muscle tissue | 9.31e-09 | 62 |
striated muscle tissue | 9.31e-09 | 62 |
myotome | 9.31e-09 | 62 |
connective tissue | 1.98e-08 | 371 |
muscle tissue | 3.06e-08 | 64 |
musculature | 3.06e-08 | 64 |
musculature of body | 3.06e-08 | 64 |
omentum | 4.06e-08 | 6 |
peritoneum | 4.06e-08 | 6 |
abdominal cavity | 4.06e-08 | 6 |
visceral peritoneum | 4.06e-08 | 6 |
dense mesenchyme tissue | 7.41e-08 | 73 |
skin of body | 9.91e-08 | 41 |
somite | 1.89e-07 | 71 |
presomitic mesoderm | 1.89e-07 | 71 |
presumptive segmental plate | 1.89e-07 | 71 |
dermomyotome | 1.89e-07 | 71 |
trunk paraxial mesoderm | 1.89e-07 | 71 |
paraxial mesoderm | 3.06e-07 | 72 |
presumptive paraxial mesoderm | 3.06e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.77e-07 | 5 |
myotonic disease | 7.77e-07 | 5 |
muscle tissue disease | 7.77e-07 | 5 |
myopathy | 7.77e-07 | 5 |
muscular disease | 7.77e-07 | 5 |
myotonic dystrophy | 7.77e-07 | 5 |