FFCP PHASE1:Hg19::chr6:143857718..143857750,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9749 | |EntrezGene=9749 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20956 | |HGNC=20956 | ||
|TSSclassifier=strong | |||
|UniProt=O75167 | |UniProt=O75167 | ||
|association_with_transcript=-231bp_to_ENST00000367584_5end | |association_with_transcript=-231bp_to_ENST00000367584_5end | ||
|cluster_id=chr6:143857718..143857750,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_12_at_PHACTR2_5end | |description=CAGE_peak_12_at_PHACTR2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000084!2.61e-08!25;CL:0000827!2.61e-08!25;CL:0000838!3.85e-07!52;CL:0000542!6.35e-07!53;CL:0000051!6.35e-07!53 | |ontology_enrichment_celltype=CL:0000084!2.61e-08!25;CL:0000827!2.61e-08!25;CL:0000838!3.85e-07!52;CL:0000542!6.35e-07!53;CL:0000051!6.35e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000138;1.22e-09;6!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |ontology_enrichment_celltype_v019=CL:0000138;1.22e-09;6!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.22e-09,6;CL:0000138,1.22e-09,6;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | |ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3371,1.46e-50,1;DOID:4549,1.46e-50,1;DOID:5861,1.46e-50,1;DOID:6496,1.46e-50,1;DOID:201,1.22e-09,6;DOID:0060100,1.22e-09,6 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0001052;1.00e-13;4!UBERON:0000160;4.68e-12;17!UBERON:0004907;2.94e-11;5!UBERON:0002108;3.42e-11;4!UBERON:0005409;1.14e-09;22!UBERON:0001871;2.26e-08;6 | |ontology_enrichment_uberon_v019=UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0001052;1.00e-13;4!UBERON:0000160;4.68e-12;17!UBERON:0004907;2.94e-11;5!UBERON:0002108;3.42e-11;4!UBERON:0005409;1.14e-09;22!UBERON:0001871;2.26e-08;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,6.76e-18,3;UBERON:0004755,6.76e-18,3;UBERON:0001052,1.00e-13,4;UBERON:0000160,4.55e-12,17;UBERON:0004907,2.94e-11,5;UBERON:0002108,3.26e-11,4;UBERON:0005409,1.11e-08,25;UBERON:0001871,2.35e-08,6 | |||
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| ||
|short_description=p12@PHACTR2 | |short_description=p12@PHACTR2 | ||
}} | }} |
Latest revision as of 20:21, 15 September 2015
Short description: | p12@PHACTR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PHACTR2_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -231bp_to_ENST00000367584_5end |
EntrezGene: | PHACTR2 |
HGNC: | 20956 |
UniProt: | O75167 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.22e-09 | 6 |
chondrocyte | 1.22e-09 | 6 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 6.76e-18 | 3 |
skeletal tissue | 6.76e-18 | 3 |
rectum | 1.00e-13 | 4 |
intestine | 4.55e-12 | 17 |
lower digestive tract | 2.94e-11 | 5 |
small intestine | 3.26e-11 | 4 |
gastrointestinal system | 1.11e-08 | 25 |
temporal lobe | 2.35e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.46e-50 | 1 |
extraosseous chondrosarcoma | 1.46e-50 | 1 |
myxoid chondrosarcoma | 1.46e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 1.46e-50 | 1 |
connective tissue cancer | 1.22e-09 | 6 |
musculoskeletal system cancer | 1.22e-09 | 6 |