FFCP PHASE1:Hg19::chr11:117947782..117947799,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:117947782..117947799,+ to FFCP PHASE1:Hg19::chr11:117947782..117947799,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56649 | |EntrezGene=56649 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11878 | |HGNC=11878 | ||
|TSSclassifier=strong | |||
|UniProt=E5RJR8,G3V124,E7ESG9,E7ERX8 | |UniProt=E5RJR8,G3V124,E7ESG9,E7ERX8 | ||
|association_with_transcript=0bp_to_ENST00000517483,ENST00000519236,ENST00000522307,ENST00000523251_5end | |||
|cluster_id=chr11:117947782..117947799,+ | |||
|description=CAGE_peak_1_at_TMPRSS4_5end | |||
|id=chr11:117947782..117947799,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.81e-26!43;CL:0000066!2.03e-21!254;CL:0000223!1.30e-19!59;CL:0002251!4.07e-13!21;CL:0002368!9.64e-12!13;CL:0002202!6.13e-08!9;CL:0002632!6.13e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.71e-21;42!CL:0002251;1.20e-13;20!CL:0002368;5.14e-12;13!CL:1000507;8.28e-09;10!CL:1000494;8.28e-09;10!CL:0002202;1.55e-07;9!CL:0002632;1.55e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.65e-26,42;CL:0000066,3.43e-21,253;CL:0000223,2.39e-19,58;CL:0002251,1.20e-13,20;CL:0002368,5.05e-12,13;CL:1000507,8.29e-09,10;CL:1000494,8.29e-09,10;CL:0002202,1.55e-07,9;CL:0002632,1.55e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;2.95e-10;58!UBERON:0006595;3.83e-08;86 | |||
|ontology_enrichment_disease=DOID:305!1.53e-16!106;DOID:1749!1.32e-13!14;DOID:299!7.43e-12!25;DOID:0050687!4.09e-10!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.97e-16;14!DOID:299;2.60e-13;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.80e-16,14;DOID:305,1.56e-15,106;DOID:299,2.59e-13,25;DOID:0050687,1.32e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.80e-25!169;UBERON:0000925!2.80e-25!169;UBERON:0006595!2.80e-25!169;UBERON:0001007!1.04e-20!155;UBERON:0001555!1.04e-20!155;UBERON:0007026!1.04e-20!155;UBERON:0000464!2.44e-18!104;UBERON:0004921!2.55e-18!129;UBERON:0004185!2.55e-18!129;UBERON:0001004!9.82e-17!72;UBERON:0000466!6.07e-15!126;UBERON:0000077!4.41e-14!130;UBERON:0000161!1.14e-11!35;UBERON:0000065!4.66e-11!53;UBERON:0005181!5.73e-11!35;UBERON:0001008!1.55e-10!45;UBERON:0005178!2.10e-10!34;UBERON:0002224!2.10e-10!34;UBERON:0005911!3.27e-10!82;UBERON:0006554!8.95e-10!44;UBERON:0002553!2.03e-09!70;UBERON:0005177!2.64e-09!107;UBERON:0000344!2.82e-09!12;UBERON:0001041!4.85e-09!98;UBERON:0000166!8.13e-09!21;UBERON:0000915!2.00e-08!52;UBERON:0005153!3.70e-08!37;UBERON:0005409!5.15e-08!35;UBERON:0003104!1.23e-07!238;UBERON:0009142!1.23e-07!238;UBERON:0000062!1.49e-07!511;UBERON:0000160!1.52e-07!27;UBERON:0000481!1.58e-07!347;UBERON:0007196!1.70e-07!14;UBERON:0001558!1.70e-07!14;UBERON:0001046!2.69e-07!19;UBERON:0003064!2.74e-07!37;UBERON:0005157!3.07e-07!51;UBERON:0002048!3.15e-07!22;UBERON:0000117!3.15e-07!22;UBERON:0000171!3.15e-07!22;UBERON:0000170!3.15e-07!22;UBERON:0005597!3.15e-07!22;UBERON:0000118!3.15e-07!22;UBERON:0009569!5.42e-07!113;UBERON:0003886!6.42e-07!63;UBERON:0000468!6.79e-07!659;UBERON:0000072!7.36e-07!46;UBERON:0000974!8.28e-07!10;UBERON:0000365!9.30e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.27e-15;33!UBERON:0005409;1.30e-13;22!UBERON:0000160;2.35e-11;17!UBERON:0001555;2.87e-11;54!UBERON:0006554;1.37e-10;30!UBERON:0001008;1.37e-10;30!UBERON:0005178;1.45e-09;34!UBERON:0002224;1.45e-09;34!UBERON:0000344;1.57e-09;20!UBERON:0000974;6.09e-09;6!UBERON:0004211;8.28e-09;10!UBERON:0009773;8.28e-09;10!UBERON:0001231;8.28e-09;10!UBERON:0004810;8.28e-09;10!UBERON:0005911;1.49e-08;36!UBERON:0005181;1.53e-08;35!UBERON:0002294;7.02e-08;7!UBERON:0001173;7.02e-08;7!UBERON:0000365;7.22e-08;5!UBERON:0007196;5.88e-07;15!UBERON:0001558;5.88e-07;15!UBERON:0001007;6.10e-07;81!UBERON:0000059;7.56e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.18e-27,160;UBERON:0000925,5.18e-27,160;UBERON:0006595,5.18e-27,160;UBERON:0001007,9.98e-22,145;UBERON:0001555,9.98e-22,145;UBERON:0007026,9.98e-22,145;UBERON:0004921,2.56e-19,118;UBERON:0001004,8.54e-15,74;UBERON:0005409,1.67e-11,25;UBERON:0000160,2.34e-11,17;UBERON:0000065,4.82e-11,54;UBERON:0005178,9.23e-11,34;UBERON:0002224,9.23e-11,34;UBERON:0005177,1.67e-10,101;UBERON:0001008,1.69e-10,48;UBERON:0005181,2.64e-10,35;UBERON:0000161,1.12e-09,36;UBERON:0006554,1.16e-09,47;UBERON:0000344,1.61e-09,20;UBERON:0005911,1.95e-09,82;UBERON:0001041,2.31e-09,87;UBERON:0004810,8.29e-09,10;UBERON:0000365,7.22e-08,5;UBERON:0000166,8.64e-08,22;UBERON:0000915,9.15e-08,52;UBERON:0009569,1.14e-07,112;UBERON:0006555,1.95e-07,16;UBERON:0004819,1.95e-07,16;UBERON:0007196,5.86e-07,15;UBERON:0001558,5.86e-07,15;UBERON:0000059,7.53e-07,11;UBERON:0008947,8.07e-07,38;UBERON:0003258,8.07e-07,38 | |||
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| ||
|short_description=p1@TMPRSS4 | |||
}} | }} |
Latest revision as of 23:06, 15 September 2015
Short description: | p1@TMPRSS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMPRSS4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000517483, ENST00000519236, ENST00000522307, ENST00000523251_5end |
EntrezGene: | TMPRSS4 |
HGNC: | 11878 |
UniProt: | E5RJR8G3V124E7ESG9E7ERX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.65e-26 | 42 |
epithelial cell | 3.43e-21 | 253 |
endodermal cell | 2.39e-19 | 58 |
epithelial cell of alimentary canal | 1.20e-13 | 20 |
respiratory epithelial cell | 5.05e-12 | 13 |
kidney tubule cell | 8.29e-09 | 10 |
nephron tubule epithelial cell | 8.29e-09 | 10 |
epithelial cell of tracheobronchial tree | 1.55e-07 | 9 |
epithelial cell of lower respiratory tract | 1.55e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.18e-27 | 160 |
endoderm | 5.18e-27 | 160 |
presumptive endoderm | 5.18e-27 | 160 |
digestive system | 9.98e-22 | 145 |
digestive tract | 9.98e-22 | 145 |
primitive gut | 9.98e-22 | 145 |
subdivision of digestive tract | 2.56e-19 | 118 |
respiratory system | 8.54e-15 | 74 |
gastrointestinal system | 1.67e-11 | 25 |
intestine | 2.34e-11 | 17 |
respiratory tract | 4.82e-11 | 54 |
thoracic cavity element | 9.23e-11 | 34 |
thoracic cavity | 9.23e-11 | 34 |
trunk region element | 1.67e-10 | 101 |
renal system | 1.69e-10 | 48 |
thoracic segment organ | 2.64e-10 | 35 |
orifice | 1.12e-09 | 36 |
urinary system structure | 1.16e-09 | 47 |
mucosa | 1.61e-09 | 20 |
endo-epithelium | 1.95e-09 | 82 |
foregut | 2.31e-09 | 87 |
nephron tubule epithelium | 8.29e-09 | 10 |
urothelium | 7.22e-08 | 5 |
oral opening | 8.64e-08 | 22 |
thoracic segment of trunk | 9.15e-08 | 52 |
subdivision of trunk | 1.14e-07 | 112 |
excretory tube | 1.95e-07 | 16 |
kidney epithelium | 1.95e-07 | 16 |
tracheobronchial tree | 5.86e-07 | 15 |
lower respiratory tract | 5.86e-07 | 15 |
large intestine | 7.53e-07 | 11 |
respiratory primordium | 8.07e-07 | 38 |
endoderm of foregut | 8.07e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.80e-16 | 14 |
carcinoma | 1.56e-15 | 106 |
adenocarcinoma | 2.59e-13 | 25 |
cell type cancer | 1.32e-09 | 143 |