FFCP PHASE1:Hg19::chr17:48262651..48262694,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:48262651..48262694,-
|short_description=p7@COL1A1
|description=CAGE_peak_7_at_COL1A1_5end
|association_with_transcript=245bp_to_M32798_5end
|EntrezGene=1...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=245bp_to_M32798_5end | |||
|cluster_id=chr17:48262651..48262694,- | |||
|coexpression_cluster_id=C1208 | |||
|description=CAGE_peak_7_at_COL1A1_5end | |||
|id=chr17:48262651..48262694,- | |||
|ontology_enrichment_celltype=CL:0000055!2.07e-42!180;CL:0000057!2.89e-23!75;CL:0000680!1.73e-18!57;CL:0000056!1.73e-18!57;CL:0000355!1.73e-18!57;CL:0000183!1.83e-18!59;CL:0000187!1.60e-17!54;CL:0000393!4.82e-16!60;CL:0000211!4.82e-16!60;CL:0000192!5.34e-14!42;CL:0000514!5.34e-14!42;CL:0000048!5.19e-10!430;CL:0002620!8.20e-10!23;CL:0000723!1.53e-09!436;CL:0000359!1.76e-09!32;CL:0000034!4.36e-09!444;CL:0002371!5.12e-08!591;CL:0002334!1.20e-07!12;CL:0000499!1.53e-07!27;CL:0000144!6.46e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000187;7.06e-11;55!CL:0000192;1.23e-10;43!CL:0000057;4.60e-10;73!CL:0000134;5.41e-10;55!CL:0000393;1.73e-09;61!CL:0000211;1.73e-09;61!CL:0002620;2.49e-09;23!CL:0000048;3.53e-09;58!CL:0000723;5.11e-09;61!CL:0002334;8.67e-09;12!CL:0000359;9.00e-09;32!CL:0002320;9.35e-09;188!CL:0000499;3.85e-08;28!CL:0000327;5.34e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.69e-24,76;CL:0000680,1.78e-19,58;CL:0000056,1.78e-19,58;CL:0000355,1.78e-19,58;CL:0000187,2.47e-18,55;CL:0000048,1.26e-16,427;CL:0000723,6.01e-16,433;CL:0000393,1.38e-15,61;CL:0000211,1.38e-15,61;CL:0000192,7.56e-15,43;CL:0000514,7.56e-15,43;CL:0000034,1.24e-14,441;CL:0000359,2.62e-09,32;CL:0002620,2.97e-09,23;CL:0002334,7.87e-09,12;CL:0000499,4.02e-08,28;CL:0002320,3.36e-07,361;CL:0000327,5.18e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;5.91e-11;58!CL:0000514;1.23e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.65e-20!83;UBERON:0002329!2.65e-20!83;UBERON:0003077!2.65e-20!83;UBERON:0003059!2.65e-20!83;UBERON:0007282!2.65e-20!83;UBERON:0009618!2.65e-20!83;UBERON:0007285!2.65e-20!83;UBERON:0004290!4.02e-19!70;UBERON:0001134!2.51e-18!61;UBERON:0002036!2.51e-18!61;UBERON:0003082!2.51e-18!61;UBERON:0002385!2.84e-18!63;UBERON:0001015!2.84e-18!63;UBERON:0000383!2.84e-18!63;UBERON:0000486!2.09e-16!82;UBERON:0005256!5.70e-16!143;UBERON:0000475!2.71e-11!365;UBERON:0002100!4.97e-11!216;UBERON:0000481!7.75e-09!347;UBERON:0003104!5.96e-08!238;UBERON:0009142!5.96e-08!238;UBERON:0000490!1.28e-07!138;UBERON:0003102!1.55e-07!95;UBERON:0004872!2.94e-07!84;UBERON:0002199!5.01e-07!45;UBERON:0002416!5.01e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.12e-08;198!UBERON:0002385;1.16e-07;31!UBERON:0001015;1.16e-07;31!UBERON:0000383;1.16e-07;31!UBERON:0006876;9.75e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.15e-19,62;UBERON:0002036,1.15e-19,62;UBERON:0003082,1.15e-19,62;UBERON:0002385,3.47e-19,64;UBERON:0001015,3.47e-19,64;UBERON:0000383,3.47e-19,64;UBERON:0007524,5.24e-19,73;UBERON:0002329,6.85e-19,71;UBERON:0003059,6.85e-19,71;UBERON:0007282,6.85e-19,71;UBERON:0004290,6.85e-19,71;UBERON:0009618,6.85e-19,71;UBERON:0003077,2.42e-18,72;UBERON:0007285,2.42e-18,72;UBERON:0007503,1.20e-17,78;UBERON:0000486,3.52e-15,83;UBERON:0005256,3.67e-13,122;UBERON:0003104,3.99e-13,160;UBERON:0009142,3.99e-13,160;UBERON:0000490,2.54e-08,148;UBERON:0000926,3.09e-08,315;UBERON:0004120,3.09e-08,315;UBERON:0006603,3.09e-08,315;UBERON:0002199,1.28e-07,46;UBERON:0002416,1.28e-07,46;UBERON:0002384,1.76e-07,371;UBERON:0002100,2.65e-07,199;UBERON:0002097,6.33e-07,41;UBERON:0004872,8.26e-07,83 | |||
|phase1_expression=35.245605578488,11.1332272423311,80.4849647387995,5.00366491765652,12.0679495495368,17.4467704820074,2.53299878168311,1.26343974685366,0.522371256399677,3.19454117451962,0.697801167972428,9.61142037372758,6.59417445571134,3.96052329472149,1.65698687863958,6.72325146451775,0.602694528023977,2.19093027116212,1.46379839637152,22.9005168022825,5.10001728110633,5.01527554364941,2.86235987131057,1.50561867580173,0.753255837568817,0.0764134057479513,0,0,0,0,1.70297735647684,0,0,0,0,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.3806866313962,6.70700859703636,3.96373941714944,644.084569549297,16.0428131403485,19.9888196165937,3.1811437882044,8.75942766544745,4.53767122387526,6.20842312895179,4.56740885604255,0.523916301990851,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,65.1033256720867,30.2646922878346,6.3556406790345,55.3594678045211,9.22137793715728,6.72813120170769,21.349799145941,11.8400423240237,0.622422070799533,2.42479209725439,1.63461903113459,44.9531560105446,9.79499071615998,4.21778577300834,0.624320153660641,1.1409436430889,1.19558944441441,0.704606991862589,0.647491777472526,1.54495887372473,2.04154171254893,1.10550885580591,0.619954687054593,19.0080457165129,16.0723504031062,1.82032272387605,12.9351265526923,6.22843621630045,1.25118519871964,0.277064115484183,8.77955241761676,11.6465362403627,6.76071265079686,11.4566504991621,32.8283033310617,150.130844339453,141.146646172268,29.4089274162714,5.5648365788757,28.8557404851105,104.039322689359,52.1518866625513,9.64626351095866,26.7579800698761,162.92832059687,5.4959659318396,45.7962374346433,3.62707553619505,47.985647623868,0.193260853163297,0.545492241181669,0,0.243947412259191,0.132529768321485,0.348581828608555,0,0.252320850875628,1.09493207722749,3.12899064659632,3.21620469096443,1.38134921352481,6.96551892047969,3.60939740834793,0,0,0,0,0,0,0,0,0,0,5.60967095213783,59.678231643053,16.1709582524096,0,0,0.590789906681404,0,0,10.122500807613,1.42675371031213,0,0,0.370353780634118,3.58389135841357,0,1.44331342025273,1.27523445472584,2.46558257895225,0.433099343283221,0,0,0,0,0,0.234004265139238,0,0,0.503946384596579,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0.190493682876507,0,0,3.4214489204541,0.308482478109971,0,0,4.59737445815979,1.74384027533312,9.02060915597685,36.1960804121778,14.3062578340753,16.90605505112,90.9508358720257,10.4007436911366,18.2617235726121,1.41849132023278,4.79559922228979,122.818096552349,106.896456262114,7.40916303102692,7.81766842304964,22.0343008220378,4.75171123760058,2.71295439353627,0,1.19967589418468,0,0,0,82.9102000000876,35.6072001085753,1.42636905040718,7.52862794671412,3.90405012845728,5.55088986043676,0,0,0.215627574859517,0.128343036279748,1.52456774533478,0,2.31986643833309,0.335032530668698,0.637938751653163,0,0,0,17.0541173489604,6.5022167737758,1.89885516589815,95.0426837195789,97.9575148496418,58.6652983926237,32.682454782967,22.8719035793066,0,7.24311499047534,61.1087550652602,7.55913591020983,25.196248195744,33.0903956112032,9.60801586670397,0,0,0,0.303127571446259,14.9791895559447,3.62868351995616,56.0723645670436,28.8508509781557,28.0660094433074,248.461810406804,54.2409684010706,55.0120410311138,5.93672265779964,6.78522652731684,7.99027763909072,26.3628170804327,3.63478100428535,4.06736324609857,0.120859449591622,0.200506470303285,0,32.6073032787483,7.10155555226196,6.03172308813351,1.35359883872224,0.0770153371044148,0.784349769176855,0,0.633309773357254,0,0,1.29549549661284,0,11.6506968143857,2.00675909541941,0,0,0.223874754722178,0,0,0,3.93617574839647,0.650756789328606,0.206082023295445,3.38807019827871,6.93079799332939,0,0,24.1025894766239,6.28359668898793,1.3864375540318,3.22357716924872,0.964856007391714,17.5094999135286,4.35050081742686,2.38634556765083,54.57663785145,0.991709492165869,0.576570202095319,0.638063562472921,0,8.36721988735114,73.6660891583698,0.6970372701606,15.7097125889805,3.19383618190213,7.82939692867565,5.5597265731176,0.286249773483982,6.32669227911434,18.0336272089674,9.53150969619124,19.19233434835,4.70732886837312,5.72765846266686,2.35484592059769,18.3469906734981,10.4324071299701,5.41937050790158,9.30039415237254,1.58510321173008,2.52755073743389,20.4806170417628,3.1682753652067,2.11300293513511,96.6419372768539,19.0897333137512,5.65040583101214,4.96228809191512,2.65375590096488,1.75380354101505,17.3632660280006,4.59126326432643,6.89895281673194,1.54911749049875,3.94373843545138,5.44963138375396,5.79669341977415,2.49669736036875,4.61189383291777,13.5108886590505,33.58807908191,12.5226147342686,3.14941248220485,0,0,0,0.470719003883896,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,1.1365445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| ||
|short_description=p7@COL1A1 | |||
}} | }} |
Latest revision as of 23:24, 15 September 2015
Short description: | p7@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL1A1_5end |
Coexpression cluster: | C1208_Chondrocyte_Preadipocyte_Fibroblast_umbilical_Smooth_skin_Olfactory |
Association with transcript: | 245bp_to_M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.69e-24 | 76 |
muscle precursor cell | 1.78e-19 | 58 |
myoblast | 1.78e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.78e-19 | 58 |
muscle cell | 2.47e-18 | 55 |
multi fate stem cell | 1.26e-16 | 427 |
somatic stem cell | 6.01e-16 | 433 |
electrically responsive cell | 1.38e-15 | 61 |
electrically active cell | 1.38e-15 | 61 |
smooth muscle cell | 7.56e-15 | 43 |
smooth muscle myoblast | 7.56e-15 | 43 |
stem cell | 1.24e-14 | 441 |
vascular associated smooth muscle cell | 2.62e-09 | 32 |
skin fibroblast | 2.97e-09 | 23 |
preadipocyte | 7.87e-09 | 12 |
stromal cell | 4.02e-08 | 28 |
connective tissue cell | 3.36e-07 | 361 |
extracellular matrix secreting cell | 5.18e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.15e-19 | 62 |
striated muscle tissue | 1.15e-19 | 62 |
myotome | 1.15e-19 | 62 |
muscle tissue | 3.47e-19 | 64 |
musculature | 3.47e-19 | 64 |
musculature of body | 3.47e-19 | 64 |
dense mesenchyme tissue | 5.24e-19 | 73 |
somite | 6.85e-19 | 71 |
presomitic mesoderm | 6.85e-19 | 71 |
presumptive segmental plate | 6.85e-19 | 71 |
dermomyotome | 6.85e-19 | 71 |
trunk paraxial mesoderm | 6.85e-19 | 71 |
paraxial mesoderm | 2.42e-18 | 72 |
presumptive paraxial mesoderm | 2.42e-18 | 72 |
epithelial vesicle | 1.20e-17 | 78 |
multilaminar epithelium | 3.52e-15 | 83 |
trunk mesenchyme | 3.67e-13 | 122 |
mesenchyme | 3.99e-13 | 160 |
entire embryonic mesenchyme | 3.99e-13 | 160 |
unilaminar epithelium | 2.54e-08 | 148 |
mesoderm | 3.09e-08 | 315 |
mesoderm-derived structure | 3.09e-08 | 315 |
presumptive mesoderm | 3.09e-08 | 315 |
integument | 1.28e-07 | 46 |
integumental system | 1.28e-07 | 46 |
connective tissue | 1.76e-07 | 371 |
trunk | 2.65e-07 | 199 |
skin of body | 6.33e-07 | 41 |
splanchnic layer of lateral plate mesoderm | 8.26e-07 | 83 |