FFCP PHASE1:Hg19::chr12:94542430..94542458,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10154 | |EntrezGene=10154 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9106 | |HGNC=9106 | ||
|TSSclassifier=strong | |||
|UniProt=O60486 | |UniProt=O60486 | ||
|association_with_transcript=-40bp_to_ENST00000258526,NM_005761,uc001tdc.2_5end | |association_with_transcript=-40bp_to_ENST00000258526,NM_005761,uc001tdc.2_5end | ||
|cluster_id=chr12:94542430..94542458,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_3_at_PLXNC1_5end | |description=CAGE_peak_3_at_PLXNC1_5end | ||
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|ontology_enrichment_celltype=CL:0000738!6.77e-43!140;CL:0000037!9.74e-39!172;CL:0000566!9.74e-39!172;CL:0000988!3.87e-36!182;CL:0002032!9.51e-36!165;CL:0000837!9.51e-36!165;CL:0002087!4.40e-35!119;CL:0002031!5.38e-33!124;CL:0000766!9.25e-29!76;CL:0002057!1.46e-26!42;CL:0000557!8.77e-26!71;CL:0002009!2.22e-25!65;CL:0000763!3.23e-25!112;CL:0000049!3.23e-25!112;CL:0002194!1.11e-24!63;CL:0000576!1.11e-24!63;CL:0000040!1.11e-24!63;CL:0000559!1.11e-24!63;CL:0000839!1.97e-23!70;CL:0000860!3.59e-23!45;CL:0000542!1.36e-09!53;CL:0000051!1.36e-09!53;CL:0000838!2.27e-09!52;CL:0002393!1.45e-07!9;CL:0002397!1.45e-07!9;CL:0000945!3.67e-07!24;CL:0000826!3.67e-07!24 | |ontology_enrichment_celltype=CL:0000738!6.77e-43!140;CL:0000037!9.74e-39!172;CL:0000566!9.74e-39!172;CL:0000988!3.87e-36!182;CL:0002032!9.51e-36!165;CL:0000837!9.51e-36!165;CL:0002087!4.40e-35!119;CL:0002031!5.38e-33!124;CL:0000766!9.25e-29!76;CL:0002057!1.46e-26!42;CL:0000557!8.77e-26!71;CL:0002009!2.22e-25!65;CL:0000763!3.23e-25!112;CL:0000049!3.23e-25!112;CL:0002194!1.11e-24!63;CL:0000576!1.11e-24!63;CL:0000040!1.11e-24!63;CL:0000559!1.11e-24!63;CL:0000839!1.97e-23!70;CL:0000860!3.59e-23!45;CL:0000542!1.36e-09!53;CL:0000051!1.36e-09!53;CL:0000838!2.27e-09!52;CL:0002393!1.45e-07!9;CL:0002397!1.45e-07!9;CL:0000945!3.67e-07!24;CL:0000826!3.67e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.14e-25;39!CL:0000234;1.14e-25;39!CL:0000860;1.20e-24;33!CL:0002057;1.20e-24;33!CL:0000576;6.57e-23;48!CL:0000766;3.87e-20;69!CL:0000738;4.27e-12;136!CL:0002087;7.18e-12;104!CL:0000763;1.24e-10;100!CL:0000945;2.57e-08;24!CL:0000236;2.44e-07;13!CL:0000988;2.77e-07;177!CL:0002393;3.14e-07;6!CL:0002397;3.14e-07;6!CL:0000235;3.52e-07;6 | |ontology_enrichment_celltype_v019=CL:0000473;1.14e-25;39!CL:0000234;1.14e-25;39!CL:0000860;1.20e-24;33!CL:0002057;1.20e-24;33!CL:0000576;6.57e-23;48!CL:0000766;3.87e-20;69!CL:0000738;4.27e-12;136!CL:0002087;7.18e-12;104!CL:0000763;1.24e-10;100!CL:0000945;2.57e-08;24!CL:0000236;2.44e-07;13!CL:0000988;2.77e-07;177!CL:0002393;3.14e-07;6!CL:0002397;3.14e-07;6!CL:0000235;3.52e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.90e-50,136;CL:0000766,1.05e-43,72;CL:0000037,1.45e-42,168;CL:0000473,7.95e-42,48;CL:0000234,7.95e-42,48;CL:0002087,1.35e-40,115;CL:0000557,3.08e-40,67;CL:0000988,3.33e-40,177;CL:0002032,2.72e-39,161;CL:0000837,2.72e-39,161;CL:0002009,2.79e-39,61;CL:0002194,2.48e-38,59;CL:0000576,2.48e-38,59;CL:0000040,2.48e-38,59;CL:0000559,2.48e-38,59;CL:0002031,2.95e-38,120;CL:0000839,2.17e-36,66;CL:0000860,4.65e-36,42;CL:0002057,4.65e-36,42;CL:0000763,2.30e-34,108;CL:0000049,2.30e-34,108;CL:0002393,7.74e-10,9;CL:0002397,7.74e-10,9;CL:0000945,1.71e-08,24;CL:0000826,1.71e-08,24;CL:0000236,6.95e-08,14;CL:0000235,4.44e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;2.09e-25;42!CL:0000049;1.14e-10;108 | |ontology_enrichment_development_v019=CL:0002057;2.09e-25;42!CL:0000049;1.14e-10;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.02e-33!102;UBERON:0003061!3.02e-33!102;UBERON:0002193!8.36e-29!112;UBERON:0002371!3.26e-22!80;UBERON:0007023!7.78e-20!115;UBERON:0001474!1.36e-19!86;UBERON:0002405!7.75e-19!115;UBERON:0004765!1.40e-16!101;UBERON:0001434!1.40e-16!101;UBERON:0000178!6.38e-10!15;UBERON:0000179!6.38e-10!15;UBERON:0000463!6.38e-10!15;UBERON:0001049!4.08e-09!57;UBERON:0005068!4.08e-09!57;UBERON:0006241!4.08e-09!57;UBERON:0007135!4.08e-09!57;UBERON:0001017!1.75e-08!82;UBERON:0005743!6.54e-08!86;UBERON:0002616!7.01e-08!59;UBERON:0000955!1.32e-07!69;UBERON:0006238!1.32e-07!69;UBERON:0002780!2.27e-07!41;UBERON:0001890!2.27e-07!41;UBERON:0006240!2.27e-07!41;UBERON:0000073!2.93e-07!94;UBERON:0001016!2.93e-07!94;UBERON:0003080!6.26e-07!42 | |ontology_enrichment_uberon=UBERON:0002390!3.02e-33!102;UBERON:0003061!3.02e-33!102;UBERON:0002193!8.36e-29!112;UBERON:0002371!3.26e-22!80;UBERON:0007023!7.78e-20!115;UBERON:0001474!1.36e-19!86;UBERON:0002405!7.75e-19!115;UBERON:0004765!1.40e-16!101;UBERON:0001434!1.40e-16!101;UBERON:0000178!6.38e-10!15;UBERON:0000179!6.38e-10!15;UBERON:0000463!6.38e-10!15;UBERON:0001049!4.08e-09!57;UBERON:0005068!4.08e-09!57;UBERON:0006241!4.08e-09!57;UBERON:0007135!4.08e-09!57;UBERON:0001017!1.75e-08!82;UBERON:0005743!6.54e-08!86;UBERON:0002616!7.01e-08!59;UBERON:0000955!1.32e-07!69;UBERON:0006238!1.32e-07!69;UBERON:0002780!2.27e-07!41;UBERON:0001890!2.27e-07!41;UBERON:0006240!2.27e-07!41;UBERON:0000073!2.93e-07!94;UBERON:0001016!2.93e-07!94;UBERON:0003080!6.26e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.82e-12;15!UBERON:0000179;2.82e-12;15!UBERON:0000463;2.82e-12;15!UBERON:0002390;1.58e-09;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;2.82e-12;15!UBERON:0000179;2.82e-12;15!UBERON:0000463;2.82e-12;15!UBERON:0002390;1.58e-09;32 | ||
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| ||
|short_description=p3@PLXNC1 | |short_description=p3@PLXNC1 | ||
}} | }} |
Latest revision as of 00:56, 16 September 2015
Short description: | p3@PLXNC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLXNC1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -40bp_to_ENST00000258526, NM_005761, uc001tdc.2_5end |
EntrezGene: | PLXNC1 |
HGNC: | 9106 |
UniProt: | O60486 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.90e-50 | 136 |
myeloid leukocyte | 1.05e-43 | 72 |
hematopoietic stem cell | 1.45e-42 | 168 |
defensive cell | 7.95e-42 | 48 |
phagocyte | 7.95e-42 | 48 |
nongranular leukocyte | 1.35e-40 | 115 |
granulocyte monocyte progenitor cell | 3.08e-40 | 67 |
hematopoietic cell | 3.33e-40 | 177 |
hematopoietic oligopotent progenitor cell | 2.72e-39 | 161 |
hematopoietic multipotent progenitor cell | 2.72e-39 | 161 |
macrophage dendritic cell progenitor | 2.79e-39 | 61 |
monopoietic cell | 2.48e-38 | 59 |
monocyte | 2.48e-38 | 59 |
monoblast | 2.48e-38 | 59 |
promonocyte | 2.48e-38 | 59 |
hematopoietic lineage restricted progenitor cell | 2.95e-38 | 120 |
myeloid lineage restricted progenitor cell | 2.17e-36 | 66 |
classical monocyte | 4.65e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.65e-36 | 42 |
myeloid cell | 2.30e-34 | 108 |
common myeloid progenitor | 2.30e-34 | 108 |
intermediate monocyte | 7.74e-10 | 9 |
CD14-positive, CD16-positive monocyte | 7.74e-10 | 9 |
lymphocyte of B lineage | 1.71e-08 | 24 |
pro-B cell | 1.71e-08 | 24 |
B cell | 6.95e-08 | 14 |
macrophage | 4.44e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.87e-50 | 98 |
blood island | 6.87e-50 | 98 |
hemolymphoid system | 2.61e-45 | 108 |
bone marrow | 1.54e-35 | 76 |
immune system | 2.55e-34 | 93 |
bone element | 3.53e-31 | 82 |
skeletal element | 2.53e-26 | 90 |
skeletal system | 2.88e-23 | 100 |
lateral plate mesoderm | 4.85e-14 | 203 |
blood | 4.62e-12 | 15 |
haemolymphatic fluid | 4.62e-12 | 15 |
organism substance | 4.62e-12 | 15 |
adult organism | 8.16e-10 | 114 |
musculoskeletal system | 3.98e-09 | 167 |