FFCP PHASE1:Hg19::chr6:151186801..151186905,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:151186801..151186905,+
|short_description=p1@MTHFD1L
|description=CAGE_peak_1_at_MTHFD1L_5end
|association_with_transcript=0bp_to_NM_001242767,NM_001242769...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25902 | |EntrezGene=25902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21055 | |HGNC=21055 | ||
|TSSclassifier=strong | |||
|UniProt=B7ZM99,Q6UB35 | |UniProt=B7ZM99,Q6UB35 | ||
|association_with_transcript=0bp_to_NM_001242767,NM_001242769,NM_015440_5end | |||
|cluster_id=chr6:151186801..151186905,+ | |||
|description=CAGE_peak_1_at_MTHFD1L_5end | |||
|id=chr6:151186801..151186905,+ | |||
|ontology_enrichment_celltype=CL:0000012!6.04e-30!682;CL:0000548!7.21e-30!679;CL:0000004!7.21e-30!679;CL:0000255!7.21e-30!679;CL:0000144!1.02e-18!625;CL:0000066!2.50e-18!254;CL:0002321!3.89e-18!248;CL:0000220!9.96e-18!246;CL:0000055!5.50e-17!180;CL:0000003!1.06e-16!722;CL:0002371!4.16e-14!591;CL:0000222!2.30e-13!119;CL:0000063!1.92e-12!578;CL:0000359!4.90e-10!32;CL:0000192!6.85e-09!42;CL:0000514!6.85e-09!42;CL:0000187!2.09e-08!54;CL:0000183!3.35e-08!59;CL:0000071!4.83e-08!18;CL:0002546!4.83e-08!18;CL:0000393!6.56e-08!60;CL:0000211!6.56e-08!60;CL:0002078!9.20e-08!44;CL:0000680!1.55e-07!57;CL:0000056!1.55e-07!57;CL:0000355!1.55e-07!57;CL:0002139!1.92e-07!24;CL:0000076!5.76e-07!62;CL:0000115!5.94e-07!35;CL:0000057!8.09e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.00e-09;32!CL:0000071;5.25e-08;18!CL:0002139;2.17e-07;24!CL:0000192;4.40e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.00e-18,250;CL:0000066,2.98e-18,253;CL:0000222,1.35e-13,121;CL:0000359,4.89e-10,32;CL:0000192,7.33e-09,43;CL:0000514,7.33e-09,43;CL:0000187,2.10e-08,55;CL:0000071,4.83e-08,18;CL:0002546,4.83e-08,18;CL:0002078,5.76e-08,45;CL:0000393,6.45e-08,61;CL:0000211,6.45e-08,61;CL:0000680,1.52e-07,58;CL:0000056,1.52e-07,58;CL:0000355,1.52e-07,58;CL:0002139,1.92e-07,24;CL:0000057,3.49e-07,76;CL:0000115,3.72e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002546;5.25e-08;18!CL:0000514;4.40e-07;43 | |||
|ontology_enrichment_disease=DOID:162!9.43e-12!235;DOID:14566!1.72e-11!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.41e-12,235;DOID:14566,1.71e-11,239 | |||
|ontology_enrichment_uberon=UBERON:0001981!6.22e-19!60;UBERON:0007500!6.22e-19!60;UBERON:0004537!6.22e-19!60;UBERON:0006965!6.22e-19!60;UBERON:0000055!1.38e-18!69;UBERON:0004872!1.77e-17!84;UBERON:0003914!3.76e-17!118;UBERON:0002049!9.97e-17!79;UBERON:0007798!9.97e-17!79;UBERON:0001637!2.28e-16!42;UBERON:0003509!2.28e-16!42;UBERON:0004572!2.28e-16!42;UBERON:0004573!1.32e-11!33;UBERON:0004571!1.32e-11!33;UBERON:0004535!4.76e-10!110;UBERON:0000490!1.54e-09!138;UBERON:0001009!5.60e-09!113;UBERON:0000487!1.91e-08!22;UBERON:0006914!4.12e-08!25;UBERON:0002100!4.14e-08!216;UBERON:0001986!4.83e-08!18;UBERON:0004638!4.83e-08!18;UBERON:0004852!4.83e-08!18;UBERON:0003104!1.02e-07!238;UBERON:0009142!1.02e-07!238;UBERON:0000486!5.50e-07!82;UBERON:0004290!9.02e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.46e-12;42!UBERON:0003509;3.46e-12;42!UBERON:0004572;3.46e-12;42!UBERON:0007500;4.68e-11;56!UBERON:0001981;4.68e-11;56!UBERON:0004537;4.68e-11;56!UBERON:0004573;1.70e-10;33!UBERON:0004571;1.70e-10;33!UBERON:0003914;6.31e-10;74!UBERON:0000055;5.87e-09;65!UBERON:0000487;2.16e-08;22!UBERON:0006914;4.21e-08;25!UBERON:0004638;5.25e-08;18!UBERON:0001986;5.25e-08;18!UBERON:0004852;5.25e-08;18!UBERON:0000025;1.31e-07;93!UBERON:0000490;3.63e-07;33!UBERON:0002049;6.74e-07;75!UBERON:0007798;6.74e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007500,2.32e-18,59;UBERON:0001981,2.32e-18,59;UBERON:0004537,2.32e-18,59;UBERON:0006965,2.32e-18,59;UBERON:0000055,4.92e-18,68;UBERON:0003914,3.82e-17,117;UBERON:0004872,5.84e-17,83;UBERON:0001637,2.28e-16,42;UBERON:0003509,2.28e-16,42;UBERON:0004572,2.28e-16,42;UBERON:0002049,3.29e-16,78;UBERON:0007798,3.29e-16,78;UBERON:0004573,1.32e-11,33;UBERON:0004571,1.32e-11,33;UBERON:0000490,1.36e-10,148;UBERON:0004535,1.08e-09,109;UBERON:0002100,2.74e-09,199;UBERON:0001009,1.21e-08,112;UBERON:0000487,1.91e-08,22;UBERON:0006914,4.11e-08,25;UBERON:0007503,4.30e-08,78;UBERON:0004638,4.83e-08,18;UBERON:0001986,4.83e-08,18;UBERON:0004852,4.83e-08,18;UBERON:0003104,3.28e-07,160;UBERON:0009142,3.28e-07,160;UBERON:0000486,5.26e-07,83;UBERON:0002329,8.71e-07,71;UBERON:0003059,8.71e-07,71;UBERON:0007282,8.71e-07,71;UBERON:0004290,8.71e-07,71;UBERON:0009618,8.71e-07,71;UBERON:0007524,9.06e-07,73 | |||
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| ||
|short_description=p1@MTHFD1L | |||
}} | }} |
Latest revision as of 04:17, 16 September 2015
Short description: | p1@MTHFD1L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MTHFD1L_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001242767, NM_001242769, NM_015440_5end |
EntrezGene: | MTHFD1L |
HGNC: | 21055 |
UniProt: | B7ZM99Q6UB35 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.00e-18 | 250 |
epithelial cell | 2.98e-18 | 253 |
mesodermal cell | 1.35e-13 | 121 |
vascular associated smooth muscle cell | 4.89e-10 | 32 |
smooth muscle cell | 7.33e-09 | 43 |
smooth muscle myoblast | 7.33e-09 | 43 |
muscle cell | 2.10e-08 | 55 |
blood vessel endothelial cell | 4.83e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.83e-08 | 18 |
meso-epithelial cell | 5.76e-08 | 45 |
electrically responsive cell | 6.45e-08 | 61 |
electrically active cell | 6.45e-08 | 61 |
muscle precursor cell | 1.52e-07 | 58 |
myoblast | 1.52e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.52e-07 | 58 |
endothelial cell of vascular tree | 1.92e-07 | 24 |
fibroblast | 3.49e-07 | 76 |
endothelial cell | 3.72e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
epithelial tube open at both ends | 2.32e-18 | 59 |
blood vessel | 2.32e-18 | 59 |
blood vasculature | 2.32e-18 | 59 |
vascular cord | 2.32e-18 | 59 |
vessel | 4.92e-18 | 68 |
epithelial tube | 3.82e-17 | 117 |
splanchnic layer of lateral plate mesoderm | 5.84e-17 | 83 |
artery | 2.28e-16 | 42 |
arterial blood vessel | 2.28e-16 | 42 |
arterial system | 2.28e-16 | 42 |
vasculature | 3.29e-16 | 78 |
vascular system | 3.29e-16 | 78 |
systemic artery | 1.32e-11 | 33 |
systemic arterial system | 1.32e-11 | 33 |
unilaminar epithelium | 1.36e-10 | 148 |
cardiovascular system | 1.08e-09 | 109 |
trunk | 2.74e-09 | 199 |
circulatory system | 1.21e-08 | 112 |
simple squamous epithelium | 1.91e-08 | 22 |
squamous epithelium | 4.11e-08 | 25 |
epithelial vesicle | 4.30e-08 | 78 |
blood vessel endothelium | 4.83e-08 | 18 |
endothelium | 4.83e-08 | 18 |
cardiovascular system endothelium | 4.83e-08 | 18 |
mesenchyme | 3.28e-07 | 160 |
entire embryonic mesenchyme | 3.28e-07 | 160 |
multilaminar epithelium | 5.26e-07 | 83 |
somite | 8.71e-07 | 71 |
presomitic mesoderm | 8.71e-07 | 71 |
presumptive segmental plate | 8.71e-07 | 71 |
dermomyotome | 8.71e-07 | 71 |
trunk paraxial mesoderm | 8.71e-07 | 71 |
dense mesenchyme tissue | 9.06e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.41e-12 | 235 |
disease of cellular proliferation | 1.71e-11 | 239 |