FFCP PHASE1:Hg19::chr2:239198771..239198784,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:239198771..239198784,-
|short_description=p7@PER2
|description=CAGE_peak_7_at_PER2_5end
|association_with_transcript=-28bp_to_ENST00000431832,ENST000004402...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8864 | |EntrezGene=8864 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8846 | |HGNC=8846 | ||
|TSSclassifier=strong | |||
|UniProt=E9PD89,F5GYD5 | |UniProt=E9PD89,F5GYD5 | ||
|association_with_transcript=-28bp_to_ENST00000431832,ENST00000440245,uc010znw.1_5end | |||
|cluster_id=chr2:239198771..239198784,- | |||
|coexpression_cluster_id=C326 | |||
|description=CAGE_peak_7_at_PER2_5end | |||
|id=chr2:239198771..239198784,- | |||
|ontology_enrichment_celltype=CL:0000223!6.55e-08!59;CL:0002076!6.72e-08!43;CL:0002368!8.08e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0000313;2.35e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.35e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;2.70e-08;1!UBERON:0008801;6.18e-08;1!UBERON:0004874;6.18e-08;1 | |||
|ontology_enrichment_disease=DOID:305!4.27e-14!106;DOID:0050687!1.11e-08!143;DOID:1749!1.78e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:299;4.33e-09;25!DOID:2152;2.35e-08;1!DOID:5093;1.59e-07;4!DOID:1612;1.59e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.36e-10,106;DOID:299,3.12e-09,25;DOID:2152,2.35e-08,1;DOID:5093,1.03e-07,4;DOID:1612,1.03e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.63e-10!169;UBERON:0000925!4.63e-10!169;UBERON:0006595!4.63e-10!169;UBERON:0000077!1.46e-09!130;UBERON:0001007!1.49e-09!155;UBERON:0001555!1.49e-09!155;UBERON:0007026!1.49e-09!155;UBERON:0004921!9.22e-09!129;UBERON:0004185!9.22e-09!129;UBERON:0002294!6.48e-08!7;UBERON:0001173!6.48e-08!7;UBERON:0004912!6.48e-08!7;UBERON:0001004!1.04e-07!72;UBERON:0000065!1.38e-07!53;UBERON:0001041!2.26e-07!98;UBERON:0005178!3.53e-07!34;UBERON:0002224!3.53e-07!34;UBERON:0005181!7.32e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;1.15e-14;2!UBERON:0002110;5.47e-10;3!UBERON:0002294;2.00e-09;7!UBERON:0001173;2.00e-09;7!UBERON:0003126;3.02e-09;7!UBERON:0001005;3.02e-09;7!UBERON:0004911;2.35e-08;1!UBERON:0001831;6.18e-08;1!UBERON:0000989;6.18e-08;1!UBERON:0002171;6.18e-08;1!UBERON:0008811;6.18e-08;1!UBERON:0006518;6.18e-08;1!UBERON:0008949;6.18e-08;1!UBERON:0000101;6.18e-08;1!UBERON:0001567;6.18e-08;1!UBERON:0002167;6.18e-08;1!UBERON:0005181;1.12e-07;35!UBERON:0007196;2.47e-07;15!UBERON:0001558;2.47e-07;15!UBERON:0005178;2.69e-07;34!UBERON:0002224;2.69e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,1.20e-14,2;UBERON:0002110,3.49e-10,3;UBERON:0006242,3.49e-10,3;UBERON:0003126,3.85e-09,7;UBERON:0001005,3.85e-09,7;UBERON:0000915,5.24e-09,52;UBERON:0005178,8.20e-09,34;UBERON:0002224,8.20e-09,34;UBERON:0005181,1.55e-08,35;UBERON:0004911,2.35e-08,1;UBERON:0001831,3.83e-08,1;UBERON:0001567,3.83e-08,1;UBERON:0008801,3.83e-08,1;UBERON:0000989,5.05e-08,1;UBERON:0008811,5.05e-08,1;UBERON:0006258,5.05e-08,1;UBERON:0005876,5.05e-08,1;UBERON:0004874,5.05e-08,1;UBERON:0002171,7.59e-08,1;UBERON:0006518,7.59e-08,1;UBERON:0008949,7.59e-08,1;UBERON:0000101,7.59e-08,1;UBERON:0002167,7.59e-08,1;UBERON:0008947,8.50e-08,38;UBERON:0003258,8.50e-08,38;UBERON:0002294,1.60e-07,9;UBERON:0001173,1.60e-07,9;UBERON:0004912,1.60e-07,9;UBERON:0001041,2.49e-07,87;UBERON:0001004,2.83e-07,74;UBERON:0007196,3.21e-07,15;UBERON:0001558,3.21e-07,15;UBERON:0000065,9.56e-07,54 | |||
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| ||
|short_description=p7@PER2 | |||
}} | }} |
Latest revision as of 05:50, 16 September 2015
Short description: | p7@PER2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PER2_5end |
Coexpression cluster: | C326_bile_choriocarcinoma_giant_lung_mucinous_glassy_malignant |
Association with transcript: | -28bp_to_ENST00000431832, ENST00000440245, uc010znw.1_5end |
EntrezGene: | PER2 |
HGNC: | 8846 |
UniProt: | E9PD89F5GYD5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.35e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 1.20e-14 | 2 |
gallbladder | 3.49e-10 | 3 |
gall bladder primordium | 3.49e-10 | 3 |
trachea | 3.85e-09 | 7 |
respiratory airway | 3.85e-09 | 7 |
thoracic segment of trunk | 5.24e-09 | 52 |
thoracic cavity element | 8.20e-09 | 34 |
thoracic cavity | 8.20e-09 | 34 |
thoracic segment organ | 1.55e-08 | 35 |
epithelium of female gonad | 2.35e-08 | 1 |
parotid gland | 3.83e-08 | 1 |
cheek | 3.83e-08 | 1 |
parotid gland primordium | 3.83e-08 | 1 |
penis | 5.05e-08 | 1 |
intromittent organ | 5.05e-08 | 1 |
lateral plate mesenchyme | 5.05e-08 | 1 |
undifferentiated genital tubercle | 5.05e-08 | 1 |
somatopleure | 5.05e-08 | 1 |
lower lobe of right lung | 7.59e-08 | 1 |
right lung lobe | 7.59e-08 | 1 |
lower lobe of lung | 7.59e-08 | 1 |
lobe of lung | 7.59e-08 | 1 |
right lung | 7.59e-08 | 1 |
respiratory primordium | 8.50e-08 | 38 |
endoderm of foregut | 8.50e-08 | 38 |
biliary system | 1.60e-07 | 9 |
biliary tree | 1.60e-07 | 9 |
biliary bud | 1.60e-07 | 9 |
foregut | 2.49e-07 | 87 |
respiratory system | 2.83e-07 | 74 |
tracheobronchial tree | 3.21e-07 | 15 |
lower respiratory tract | 3.21e-07 | 15 |
respiratory tract | 9.56e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.36e-10 | 106 |
adenocarcinoma | 3.12e-09 | 25 |
ovary epithelial cancer | 2.35e-08 | 1 |
thoracic cancer | 1.03e-07 | 4 |
breast cancer | 1.03e-07 | 4 |