FFCP PHASE1:Hg19::chr13:100153737..100153785,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:100153737..100153785,+ to FFCP PHASE1:Hg19::chr13:100153737..100153785,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9375 | |EntrezGene=9375 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11865 | |HGNC=11865 | ||
|TSSclassifier=strong | |||
|UniProt=Q99805 | |UniProt=Q99805 | ||
|association_with_transcript=9bp_to_ENST00000463123,NM_004800,uc001voj.1,uc010afz.1_5end | |||
|cluster_id=chr13:100153737..100153785,+ | |||
|description=CAGE_peak_1_at_TM9SF2_5end | |||
|id=chr13:100153737..100153785,+ | |||
|ontology_enrichment_celltype=CL:0000048!1.76e-30!430;CL:0000034!4.15e-30!444;CL:0002320!4.58e-30!365;CL:0000134!8.25e-30!358;CL:0000723!1.78e-29!436;CL:0000219!3.25e-26!390;CL:0000766!2.08e-24!76;CL:0000557!9.65e-20!71;CL:0000839!4.53e-19!70;CL:0000738!1.16e-18!140;CL:0000763!1.16e-18!112;CL:0000049!1.16e-18!112;CL:0002194!1.59e-18!63;CL:0000576!1.59e-18!63;CL:0000040!1.59e-18!63;CL:0000559!1.59e-18!63;CL:0002009!3.19e-18!65;CL:0002371!7.81e-18!591;CL:0000037!3.79e-17!172;CL:0000566!3.79e-17!172;CL:0000144!5.17e-17!625;CL:0002032!3.61e-16!165;CL:0000837!3.61e-16!165;CL:0000988!2.55e-14!182;CL:0002031!5.02e-14!124;CL:0002087!8.61e-14!119;CL:0002057!6.56e-13!42;CL:0000860!8.62e-12!45;CL:0000063!3.06e-11!578;CL:0000012!4.06e-11!682;CL:0000548!2.45e-10!679;CL:0000004!2.45e-10!679;CL:0000255!2.45e-10!679;CL:0000003!1.81e-09!722 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.29e-12;39!CL:0000234;1.29e-12;39!CL:0000860;1.23e-11;33!CL:0002057;1.23e-11;33!CL:0000576;2.19e-10;48!CL:0000766;4.54e-10;69!CL:0000763;4.75e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,8.91e-31,427;CL:0002320,1.37e-30,361;CL:0000034,2.17e-30,441;CL:0000134,2.42e-30,354;CL:0000723,9.24e-30,433;CL:0000219,1.15e-26,386;CL:0000766,1.20e-25,72;CL:0000557,8.20e-21,67;CL:0000839,4.05e-20,66;CL:0002194,1.15e-19,59;CL:0000576,1.15e-19,59;CL:0000040,1.15e-19,59;CL:0000559,1.15e-19,59;CL:0002009,2.63e-19,61;CL:0000763,2.83e-19,108;CL:0000049,2.83e-19,108;CL:0000738,3.85e-19,136;CL:0000037,1.71e-17,168;CL:0002032,1.64e-16,161;CL:0000837,1.64e-16,161;CL:0000473,4.69e-16,48;CL:0000234,4.69e-16,48;CL:0000988,9.55e-15,177;CL:0002031,1.96e-14,120;CL:0002087,3.26e-14,115;CL:0000860,6.56e-13,42;CL:0002057,6.56e-13,42 | |||
|ontology_enrichment_development_v019=CL:0002057;8.85e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.83e-29!375;UBERON:0002405!1.24e-18!115;UBERON:0002371!3.51e-18!80;UBERON:0002193!1.72e-17!112;UBERON:0001474!6.23e-17!86;UBERON:0002390!1.02e-16!102;UBERON:0003061!1.02e-16!102;UBERON:0004765!1.14e-16!101;UBERON:0001434!1.14e-16!101;UBERON:0002204!2.24e-11!167;UBERON:0003081!4.10e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.73e-30,371;UBERON:0004765,2.54e-19,90;UBERON:0002371,4.80e-19,76;UBERON:0002405,5.81e-19,93;UBERON:0002193,4.58e-18,108;UBERON:0001434,1.01e-17,100;UBERON:0001474,1.13e-17,82;UBERON:0002390,2.52e-17,98;UBERON:0003061,2.52e-17,98;UBERON:0002204,7.14e-12,167;UBERON:0003081,8.11e-09,203 | |||
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| ||
|short_description=p1@TM9SF2 | |||
}} | }} |
Latest revision as of 07:19, 16 September 2015
Short description: | p1@TM9SF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TM9SF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 9bp_to_ENST00000463123, NM_004800, uc001voj.1, uc010afz.1_5end |
EntrezGene: | TM9SF2 |
HGNC: | 11865 |
UniProt: | Q99805 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 8.91e-31 | 427 |
connective tissue cell | 1.37e-30 | 361 |
stem cell | 2.17e-30 | 441 |
mesenchymal cell | 2.42e-30 | 354 |
somatic stem cell | 9.24e-30 | 433 |
motile cell | 1.15e-26 | 386 |
myeloid leukocyte | 1.20e-25 | 72 |
granulocyte monocyte progenitor cell | 8.20e-21 | 67 |
myeloid lineage restricted progenitor cell | 4.05e-20 | 66 |
monopoietic cell | 1.15e-19 | 59 |
monocyte | 1.15e-19 | 59 |
monoblast | 1.15e-19 | 59 |
promonocyte | 1.15e-19 | 59 |
macrophage dendritic cell progenitor | 2.63e-19 | 61 |
myeloid cell | 2.83e-19 | 108 |
common myeloid progenitor | 2.83e-19 | 108 |
leukocyte | 3.85e-19 | 136 |
hematopoietic stem cell | 1.71e-17 | 168 |
hematopoietic oligopotent progenitor cell | 1.64e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.64e-16 | 161 |
defensive cell | 4.69e-16 | 48 |
phagocyte | 4.69e-16 | 48 |
hematopoietic cell | 9.55e-15 | 177 |
hematopoietic lineage restricted progenitor cell | 1.96e-14 | 120 |
nongranular leukocyte | 3.26e-14 | 115 |
classical monocyte | 6.56e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.56e-13 | 42 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.73e-30 | 371 |
skeletal element | 2.54e-19 | 90 |
bone marrow | 4.80e-19 | 76 |
immune system | 5.81e-19 | 93 |
hemolymphoid system | 4.58e-18 | 108 |
skeletal system | 1.01e-17 | 100 |
bone element | 1.13e-17 | 82 |
hematopoietic system | 2.52e-17 | 98 |
blood island | 2.52e-17 | 98 |
musculoskeletal system | 7.14e-12 | 167 |
lateral plate mesoderm | 8.11e-09 | 203 |