FFCP PHASE1:Hg19::chr9:137218262..137218273,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6256 | |EntrezGene=6256 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10477 | |HGNC=10477 | ||
|TSSclassifier=strong | |||
|UniProt=F1D8Q5,P19793,Q6P3U7 | |UniProt=F1D8Q5,P19793,Q6P3U7 | ||
|association_with_transcript=-42bp_to_NM_002957,uc004cfb.2_5end | |association_with_transcript=-42bp_to_NM_002957,uc004cfb.2_5end | ||
|cluster_id=chr9:137218262..137218273,+ | |||
|description=CAGE_peak_5_at_RXRA_5end | |description=CAGE_peak_5_at_RXRA_5end | ||
|id=chr9:137218262..137218273,+ | |id=chr9:137218262..137218273,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.18e-25!115;UBERON:0003075!2.72e-09!86;UBERON:0007284!2.72e-09!86;UBERON:0001049!7.01e-09!57;UBERON:0005068!7.01e-09!57;UBERON:0006241!7.01e-09!57;UBERON:0007135!7.01e-09!57;UBERON:0002346!8.71e-09!90;UBERON:0004121!1.85e-08!169;UBERON:0000924!3.43e-08!173;UBERON:0006601!3.43e-08!173;UBERON:0000153!1.14e-07!129;UBERON:0007811!1.14e-07!129;UBERON:0000033!1.18e-07!123;UBERON:0005743!3.23e-07!86;UBERON:0001017!4.10e-07!82;UBERON:0000062!6.88e-07!511 | |ontology_enrichment_uberon=UBERON:0007023!1.18e-25!115;UBERON:0003075!2.72e-09!86;UBERON:0007284!2.72e-09!86;UBERON:0001049!7.01e-09!57;UBERON:0005068!7.01e-09!57;UBERON:0006241!7.01e-09!57;UBERON:0007135!7.01e-09!57;UBERON:0002346!8.71e-09!90;UBERON:0004121!1.85e-08!169;UBERON:0000924!3.43e-08!173;UBERON:0006601!3.43e-08!173;UBERON:0000153!1.14e-07!129;UBERON:0007811!1.14e-07!129;UBERON:0000033!1.18e-07!123;UBERON:0005743!3.23e-07!86;UBERON:0001017!4.10e-07!82;UBERON:0000062!6.88e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.84e-07;114 | |ontology_enrichment_uberon_v019=UBERON:0007023;1.84e-07;114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.05e-30,114;UBERON:0001049,1.92e-09,56;UBERON:0005068,1.92e-09,56;UBERON:0006241,1.92e-09,56;UBERON:0007135,1.92e-09,56;UBERON:0003075,5.90e-08,82;UBERON:0007284,5.90e-08,82;UBERON:0003076,6.71e-08,15;UBERON:0003057,6.71e-08,15;UBERON:0000073,6.97e-08,53;UBERON:0002616,6.97e-08,53;UBERON:0002346,5.22e-07,86;UBERON:0001017,8.48e-07,81;UBERON:0010314,8.70e-07,132 | |||
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| ||
|short_description=p5@RXRA | |short_description=p5@RXRA | ||
}} | }} |
Latest revision as of 08:14, 16 September 2015
Short description: | p5@RXRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RXRA_5end |
Coexpression cluster: | NA |
Association with transcript: | -42bp_to_NM_002957, uc004cfb.2_5end |
EntrezGene: | RXRA |
HGNC: | 10477 |
UniProt: | F1D8Q5P19793Q6P3U7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.05e-30 | 114 |
neural tube | 1.92e-09 | 56 |
neural rod | 1.92e-09 | 56 |
future spinal cord | 1.92e-09 | 56 |
neural keel | 1.92e-09 | 56 |
neural plate | 5.90e-08 | 82 |
presumptive neural plate | 5.90e-08 | 82 |
posterior neural tube | 6.71e-08 | 15 |
chordal neural plate | 6.71e-08 | 15 |
regional part of nervous system | 6.97e-08 | 53 |
regional part of brain | 6.97e-08 | 53 |
neurectoderm | 5.22e-07 | 86 |
central nervous system | 8.48e-07 | 81 |
structure with developmental contribution from neural crest | 8.70e-07 | 132 |