FFCP PHASE1:Hg19::chr17:55333876..55333939,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=124540 | |EntrezGene=124540 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18585 | |HGNC=18585 | ||
|TSSclassifier=strong | |||
|UniProt=Q96DH6 | |UniProt=Q96DH6 | ||
|association_with_transcript=0bp_to_ENST00000284073,NM_138962,uc002iuz.1_5end | |association_with_transcript=0bp_to_ENST00000284073,NM_138962,uc002iuz.1_5end | ||
|cluster_id=chr17:55333876..55333939,+ | |||
|coexpression_cluster_id=C3658 | |coexpression_cluster_id=C3658 | ||
|description=CAGE_peak_1_at_MSI2_5end | |description=CAGE_peak_1_at_MSI2_5end | ||
|id=chr17:55333876..55333939,+ | |id=chr17:55333876..55333939,+ | ||
|ontology_enrichment_celltype=CL:0000838!8.17e-12!52;CL:0000542!9.49e-12!53;CL:0000051!9.49e-12!53;CL:0000084!7.65e-08!25;CL:0000827!7.65e-08!25;CL:0000791!1.58e-07!18;CL:0000789!1.58e-07!18;CL:0002420!1.58e-07!18;CL:0002419!1.58e-07!18;CL:0000790!1.58e-07!18 | |ontology_enrichment_celltype=CL:0000838!8.17e-12!52;CL:0000542!9.49e-12!53;CL:0000051!9.49e-12!53;CL:0000084!7.65e-08!25;CL:0000827!7.65e-08!25;CL:0000791!1.58e-07!18;CL:0000789!1.58e-07!18;CL:0002420!1.58e-07!18;CL:0002419!1.58e-07!18;CL:0000790!1.58e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000542;8.24e-08;53!CL:0000084;8.24e-08;25!CL:0000791;1.71e-07;18!CL:0000789;1.71e-07;18!CL:0002419;1.71e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.10e-12,52;CL:0000542,9.41e-12,53;CL:0000051,9.41e-12,53;CL:0000084,7.61e-08,25;CL:0000827,7.61e-08,25;CL:0000791,1.57e-07,18;CL:0000789,1.57e-07,18;CL:0002420,1.57e-07,18;CL:0002419,1.57e-07,18;CL:0000790,1.57e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;8.24e-08;53!CL:0000790;1.71e-07;18 | |||
|ontology_enrichment_disease=DOID:162!5.45e-09!235;DOID:14566!5.70e-08!239;DOID:0050687!1.22e-07!143 | |ontology_enrichment_disease=DOID:162!5.45e-09!235;DOID:14566!5.70e-08!239;DOID:0050687!1.22e-07!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.34e-09,235;DOID:14566,4.63e-08,239;DOID:0050687,1.04e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.76e-08!94;UBERON:0001016!2.76e-08!94;UBERON:0001017!7.29e-08!82;UBERON:0005743!1.33e-07!86;UBERON:0001049!2.87e-07!57;UBERON:0005068!2.87e-07!57;UBERON:0006241!2.87e-07!57;UBERON:0007135!2.87e-07!57 | |ontology_enrichment_uberon=UBERON:0000073!2.76e-08!94;UBERON:0001016!2.76e-08!94;UBERON:0001017!7.29e-08!82;UBERON:0005743!1.33e-07!86;UBERON:0001049!2.87e-07!57;UBERON:0005068!2.87e-07!57;UBERON:0006241!2.87e-07!57;UBERON:0007135!2.87e-07!57 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.39e-08,89;UBERON:0001017,1.14e-07,81;UBERON:0001049,4.58e-07,56;UBERON:0005068,4.58e-07,56;UBERON:0006241,4.58e-07,56;UBERON:0007135,4.58e-07,56 | |||
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| ||
|short_description=p1@MSI2 | |short_description=p1@MSI2 | ||
}} | }} |
Latest revision as of 08:50, 16 September 2015
Short description: | p1@MSI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MSI2_5end |
Coexpression cluster: | C3658_anaplastic_granulocyte_spinal_CD34_seminal_pineal_merkel |
Association with transcript: | 0bp_to_ENST00000284073, NM_138962, uc002iuz.1_5end |
EntrezGene: | MSI2 |
HGNC: | 18585 |
UniProt: | Q96DH6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.10e-12 | 52 |
lymphocyte | 9.41e-12 | 53 |
common lymphoid progenitor | 9.41e-12 | 53 |
T cell | 7.61e-08 | 25 |
pro-T cell | 7.61e-08 | 25 |
mature alpha-beta T cell | 1.57e-07 | 18 |
alpha-beta T cell | 1.57e-07 | 18 |
immature T cell | 1.57e-07 | 18 |
mature T cell | 1.57e-07 | 18 |
immature alpha-beta T cell | 1.57e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.39e-08 | 89 |
central nervous system | 1.14e-07 | 81 |
neural tube | 4.58e-07 | 56 |
neural rod | 4.58e-07 | 56 |
future spinal cord | 4.58e-07 | 56 |
neural keel | 4.58e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.34e-09 | 235 |
disease of cellular proliferation | 4.63e-08 | 239 |
cell type cancer | 1.04e-07 | 143 |