FFCP PHASE1:Hg19::chr5:151051155..151051191,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:151051155..151051191,- to FFCP PHASE1:Hg19::chr5:151051155..151051191,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6678 | |EntrezGene=6678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11219 | |HGNC=11219 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=198bp_to_ENST00000524277_5end | |||
|cluster_id=chr5:151051155..151051191,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_6_at_SPARC_5end | |||
|id=chr5:151051155..151051191,- | |||
|ontology_enrichment_celltype=CL:0000055!5.51e-29!180;CL:0000222!1.34e-17!119;CL:0000057!3.20e-17!75;CL:0000183!4.13e-12!59;CL:0000680!9.08e-12!57;CL:0000056!9.08e-12!57;CL:0000355!9.08e-12!57;CL:0000187!3.23e-11!54;CL:0000136!2.32e-10!15;CL:0000393!7.73e-10!60;CL:0000211!7.73e-10!60;CL:0000192!1.37e-09!42;CL:0000514!1.37e-09!42;CL:0000359!1.46e-07!32;CL:0002334!5.30e-07!12;CL:0000213!5.44e-07!57;CL:0000215!5.44e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.87e-10;13!CL:0000134;3.10e-10;55!CL:0000349;2.00e-09;19!CL:0000048;3.25e-09;58!CL:0000723;4.72e-09;61!CL:0000192;4.90e-08;43!CL:0000359;5.18e-08;32!CL:0002334;1.57e-07;12!CL:0002320;2.18e-07;188!CL:0000187;3.15e-07;55!CL:0000057;8.26e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.31e-18,121;CL:0000057,5.36e-17,76;CL:0000680,2.83e-13,58;CL:0000056,2.83e-13,58;CL:0000355,2.83e-13,58;CL:0000187,1.16e-12,55;CL:0000136,2.56e-11,15;CL:0000192,7.40e-11,43;CL:0000514,7.40e-11,43;CL:0000393,4.95e-10,61;CL:0000211,4.95e-10,61;CL:0000349,1.70e-09,19;CL:0000359,2.37e-08,32;CL:0002334,1.35e-07,12;CL:0000048,1.92e-07,427;CL:0000213,7.26e-07,58;CL:0000215,7.26e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;4.90e-08;43!CL:0000355;2.54e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!6.11e-17!84;UBERON:0002049!3.08e-14!79;UBERON:0007798!3.08e-14!79;UBERON:0000914!3.94e-14!83;UBERON:0002329!3.94e-14!83;UBERON:0003077!3.94e-14!83;UBERON:0003059!3.94e-14!83;UBERON:0007282!3.94e-14!83;UBERON:0009618!3.94e-14!83;UBERON:0007285!3.94e-14!83;UBERON:0004535!9.46e-14!110;UBERON:0001009!2.01e-13!113;UBERON:0004290!8.67e-13!70;UBERON:0001134!9.88e-13!61;UBERON:0002036!9.88e-13!61;UBERON:0003082!9.88e-13!61;UBERON:0000055!1.23e-12!69;UBERON:0002385!1.66e-12!63;UBERON:0001015!1.66e-12!63;UBERON:0000383!1.66e-12!63;UBERON:0001981!9.77e-12!60;UBERON:0007500!9.77e-12!60;UBERON:0004537!9.77e-12!60;UBERON:0006965!9.77e-12!60;UBERON:0005256!8.62e-11!143;UBERON:0000475!1.50e-10!365;UBERON:0003914!4.03e-10!118;UBERON:0000486!5.61e-10!82;UBERON:0001637!7.92e-10!42;UBERON:0003509!7.92e-10!42;UBERON:0004572!7.92e-10!42;UBERON:0000468!3.48e-09!659;UBERON:0000490!2.01e-08!138;UBERON:0002100!5.52e-08!216;UBERON:0004573!5.79e-08!33;UBERON:0004571!5.79e-08!33;UBERON:0000478!2.50e-07!24;UBERON:0001013!8.77e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.92e-08;42!UBERON:0003509;2.92e-08;42!UBERON:0004572;2.92e-08;42!UBERON:0002384;3.80e-08;198!UBERON:0000478;5.32e-08;24!UBERON:0004573;9.78e-08;33!UBERON:0004571;9.78e-08;33!UBERON:0001013;2.55e-07;14 | |||
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|phase1_expression=25.798329856419,36.6111895853581,48.911178221302,41.0300523247835,72.4076972972206,59.3190196388251,70.923965887127,11.370957721683,12.0145388971926,0.982935746006035,0,1.31064823278103,4.74780560811216,3.21792517696121,5.63375538737457,1.34465029290355,6.02694528023977,3.65155045193687,4.39139518911456,2.21617904538218,3.4680117511523,5.32873026512749,0.85870796139317,1.09499540058307,1.88313959392204,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0.447830948479849,1.6194683300949,0.77272670290256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,2.68280343881454,3.45228916977532,9.03597880961416,7.52006865953834,13.4707262633566,30.2208659879418,34.5510757914871,1.32348744029695,2.88248216701333,2.3715392137144,1.24430121722827,0.364295288292542,0.370784442784429,0.324547393654683,0,0.398873881556595,0,0,0,1.19257444420023,2.58070378531837,3.47140501607594,5.08777147731609,5.87299210693868,4.67700671298115,3.13492449805216,2.06733407335463,7.1153252537342,5.02080919147005,4.43112248820062,1.52054421143703,3.41686880567437,0.735326160691737,8.91156142669936,2.23249320710199,1.12264686313085,1.12611480483322,1.53316637465883,1.89853131913626,2.38162267109529,0,0,0.436094052142534,44.7274756525787,13.1695732131163,4.36950296683622,55.3594678045211,10.2853830837524,12.8955848032731,7.47242970107935,24.1734197448817,1.8672662123986,6.87024427555409,3.92308567472301,9.53551794163068,9.21881479167998,0.70296429550139,0.936480230490962,0.570471821544449,1.04614076386261,1.17434498643765,0.809364721840658,1.12360645361799,4.08308342509786,2.08818339430006,1.96318984233954,16.6320400019487,26.9520952913627,3.64064544775211,10.7792721272436,0.841680569770331,1.50142223846357,0.554128230968366,7.90159717585508,14.7114141983529,23.1366610716159,4.65071950956086,8.79009214875424,13.2405581067512,9.11307174986116,8.70264178644767,5.87399416659102,6.69865404118636,13.2142967995429,5.56961896396179,10.3283225470871,5.04867548488229,7.45604179002625,10.6686397500416,11.7153165530483,8.06016785821122,3.05209066158878,1.15956511897978,0.818238361772504,0.573609190778008,0.609868530647977,0,0.580969714347592,0.725627385107593,1.26160425437814,0.72995471815166,6.25798129319264,13.5080597020506,4.14404764057442,1.39310378409594,3.60939740834793,0,0,0,0,0,0,0,0,0,13.2867981832437,9.81692416624121,7.8199062152966,30.8718293909638,0,0,2.36315962672562,0,0,1.88724591328378,0.329250856225877,0,0.201057944823262,0.462942225792648,0.651616610620649,2.07986957055916,0,0.34779121492523,4.81375646366869,2.88732895522148,3.70388410061289,2.85381228351897,0,0,0.246217006087397,2.10603838625314,1.93220510975347,0.93733833986777,2.18376766658517,0.708875486211932,0,0.290633938513962,0,0,0,0.621984346622316,0.432359860250884,0.25248486685276,0.507983154337352,2.29193055334967,0,1.71072446022705,1.23392991243988,1.50171528921959,0.285826432630578,1.34557301214433,3.92364061949952,1.39342743059805,14.3491604491133,7.15312891703765,1.690605505112,11.4353390131494,12.4808924293639,2.82928111688356,2.83698264046557,2.93064396917709,6.29103172095849,34.7277827450524,4.93944202068461,4.56030658011229,7.10783897485092,5.543663110534,11.4546963282643,7.84380112740265,10.597137065298,0,0,0,15.8152404624445,22.9723871668228,1.42636905040718,5.64647096003559,5.54786070886035,2.32779252211864,0,0,0,0,1.27047312111232,1.30139853857622,0.773288812777695,0.670065061337395,1.27587750330633,0,0,0.414415513436035,1.96306386750624,6.00204625271613,1.35632511849868,15.8057854763413,17.1291829245275,10.2506569772058,7.84847480451178,24.3766340779452,72.7704012979152,5.17365356462525,5.97803038681893,7.92787424729324,2.5196248195744,8.41944977089785,13.0394501048125,0.206768026122887,0.215714200818617,0.106727557803444,2.72814814301633,16.6435439510497,8.76931850656073,41.6821117135545,10.4354141835882,46.8702357703233,51.2556597022804,19.4448754645347,32.8141999132959,28.1994326245483,4.62629081407967,17.2234873553733,2.62806899244189,6.75030757938707,4.64841513839837,0,4.81215528727884,0,5.97035130455955,4.18809686415449,7.34296723772775,0,0.231046011313244,0,0,0.211103257785751,11.3733384070897,3.74206151608334,1.72732732881711,9.25363516141736,1.35473218771926,2.00675909541941,0,0.831076008928724,0.447749509444357,0,0,1.02580050046556,1.31205858279882,0.976135183992909,5.04900957073839,0.457847324091717,0.577566499444116,0.574265537996172,1.30012049207304,19.2820715812991,2.12675580242668,2.31072925671967,3.53058451870098,2.06754858726796,4.29680979473094,4.78555089916954,1.78975917573812,11.4851325984291,0.165284915360978,0,0,0,2.78907329578371,44.0737285562896,2.7881490806424,7.70083950440222,2.12922412126809,0,7.59829298326072,10.1618669586814,1.86079184679834,3.16379424718726,11.8190720232771,3.07077349573601,5.13526785640705,2.22742273548156,15.6989728039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| ||
|short_description=p6@SPARC | |||
}} | }} |
Latest revision as of 10:17, 16 September 2015
Short description: | p6@SPARC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SPARC_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 198bp_to_ENST00000524277_5end |
EntrezGene: | SPARC |
HGNC: | 11219 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.31e-18 | 121 |
fibroblast | 5.36e-17 | 76 |
muscle precursor cell | 2.83e-13 | 58 |
myoblast | 2.83e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.83e-13 | 58 |
muscle cell | 1.16e-12 | 55 |
fat cell | 2.56e-11 | 15 |
smooth muscle cell | 7.40e-11 | 43 |
smooth muscle myoblast | 7.40e-11 | 43 |
electrically responsive cell | 4.95e-10 | 61 |
electrically active cell | 4.95e-10 | 61 |
extraembryonic cell | 1.70e-09 | 19 |
vascular associated smooth muscle cell | 2.37e-08 | 32 |
preadipocyte | 1.35e-07 | 12 |
multi fate stem cell | 1.92e-07 | 427 |
lining cell | 7.26e-07 | 58 |
barrier cell | 7.26e-07 | 58 |