FFCP PHASE1:Hg19::chr6:158438236..158438243,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8871 | |EntrezGene=8871 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11504 | |HGNC=11504 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=63bp_to_uc003qqy.1_5end | |association_with_transcript=63bp_to_uc003qqy.1_5end | ||
|cluster_id=chr6:158438236..158438243,+ | |||
|description=CAGE_peak_17_at_SYNJ2_5end | |description=CAGE_peak_17_at_SYNJ2_5end | ||
|id=chr6:158438236..158438243,+ | |id=chr6:158438236..158438243,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002543;1.38e-09;6 | |ontology_enrichment_celltype_v019=CL:0002543;1.38e-09;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002543,1.22e-09,6 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.31e-53!57;UBERON:0005068!1.31e-53!57;UBERON:0006241!1.31e-53!57;UBERON:0007135!1.31e-53!57;UBERON:0001017!2.89e-49!82;UBERON:0001893!9.74e-48!34;UBERON:0002780!3.66e-47!41;UBERON:0001890!3.66e-47!41;UBERON:0006240!3.66e-47!41;UBERON:0005743!1.17e-46!86;UBERON:0001869!6.00e-46!32;UBERON:0003080!6.25e-46!42;UBERON:0000955!9.68e-46!69;UBERON:0006238!9.68e-46!69;UBERON:0002791!2.47e-44!33;UBERON:0002616!3.29e-44!59;UBERON:0003075!4.99e-44!86;UBERON:0007284!4.99e-44!86;UBERON:0002619!8.67e-43!22;UBERON:0002020!8.81e-43!34;UBERON:0003528!8.81e-43!34;UBERON:0002346!9.55e-42!90;UBERON:0001950!1.24e-41!20;UBERON:0000073!1.40e-41!94;UBERON:0001016!1.40e-41!94;UBERON:0000956!2.13e-37!25;UBERON:0000203!2.13e-37!25;UBERON:0007023!3.64e-36!115;UBERON:0003056!8.11e-36!61;UBERON:0000033!1.99e-30!123;UBERON:0000153!1.15e-28!129;UBERON:0007811!1.15e-28!129;UBERON:0000200!8.90e-25!6;UBERON:0004121!1.55e-24!169;UBERON:0000924!8.72e-24!173;UBERON:0006601!8.72e-24!173;UBERON:0001871!4.24e-18!7;UBERON:0000025!1.91e-15!194;UBERON:0002021!1.20e-13!5;UBERON:0000349!1.55e-13!5;UBERON:0000477!3.44e-13!286;UBERON:0004111!6.20e-13!241;UBERON:0002771!1.15e-12!3;UBERON:0002420!1.48e-11!9;UBERON:0007245!1.48e-11!9;UBERON:0010009!1.48e-11!9;UBERON:0010011!1.48e-11!9;UBERON:0000454!1.48e-11!9;UBERON:0000483!1.77e-11!309;UBERON:0000119!2.77e-11!312;UBERON:0001870!1.01e-09!2;UBERON:0001876!1.47e-09!2;UBERON:0003076!2.45e-09!15;UBERON:0003057!2.45e-09!15;UBERON:0001875!2.64e-09!2;UBERON:0006514!2.64e-09!2;UBERON:0002360!1.28e-08!2;UBERON:0000094!1.28e-08!2;UBERON:0007645!1.28e-08!2;UBERON:0002298!2.06e-08!8;UBERON:0000064!4.59e-08!219;UBERON:0002308!1.56e-07!9;UBERON:0000125!1.56e-07!9;UBERON:0000475!4.59e-07!365 | |ontology_enrichment_uberon=UBERON:0001049!1.31e-53!57;UBERON:0005068!1.31e-53!57;UBERON:0006241!1.31e-53!57;UBERON:0007135!1.31e-53!57;UBERON:0001017!2.89e-49!82;UBERON:0001893!9.74e-48!34;UBERON:0002780!3.66e-47!41;UBERON:0001890!3.66e-47!41;UBERON:0006240!3.66e-47!41;UBERON:0005743!1.17e-46!86;UBERON:0001869!6.00e-46!32;UBERON:0003080!6.25e-46!42;UBERON:0000955!9.68e-46!69;UBERON:0006238!9.68e-46!69;UBERON:0002791!2.47e-44!33;UBERON:0002616!3.29e-44!59;UBERON:0003075!4.99e-44!86;UBERON:0007284!4.99e-44!86;UBERON:0002619!8.67e-43!22;UBERON:0002020!8.81e-43!34;UBERON:0003528!8.81e-43!34;UBERON:0002346!9.55e-42!90;UBERON:0001950!1.24e-41!20;UBERON:0000073!1.40e-41!94;UBERON:0001016!1.40e-41!94;UBERON:0000956!2.13e-37!25;UBERON:0000203!2.13e-37!25;UBERON:0007023!3.64e-36!115;UBERON:0003056!8.11e-36!61;UBERON:0000033!1.99e-30!123;UBERON:0000153!1.15e-28!129;UBERON:0007811!1.15e-28!129;UBERON:0000200!8.90e-25!6;UBERON:0004121!1.55e-24!169;UBERON:0000924!8.72e-24!173;UBERON:0006601!8.72e-24!173;UBERON:0001871!4.24e-18!7;UBERON:0000025!1.91e-15!194;UBERON:0002021!1.20e-13!5;UBERON:0000349!1.55e-13!5;UBERON:0000477!3.44e-13!286;UBERON:0004111!6.20e-13!241;UBERON:0002771!1.15e-12!3;UBERON:0002420!1.48e-11!9;UBERON:0007245!1.48e-11!9;UBERON:0010009!1.48e-11!9;UBERON:0010011!1.48e-11!9;UBERON:0000454!1.48e-11!9;UBERON:0000483!1.77e-11!309;UBERON:0000119!2.77e-11!312;UBERON:0001870!1.01e-09!2;UBERON:0001876!1.47e-09!2;UBERON:0003076!2.45e-09!15;UBERON:0003057!2.45e-09!15;UBERON:0001875!2.64e-09!2;UBERON:0006514!2.64e-09!2;UBERON:0002360!1.28e-08!2;UBERON:0000094!1.28e-08!2;UBERON:0007645!1.28e-08!2;UBERON:0002298!2.06e-08!8;UBERON:0000064!4.59e-08!219;UBERON:0002308!1.56e-07!9;UBERON:0000125!1.56e-07!9;UBERON:0000475!4.59e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0007190;3.10e-50;1!UBERON:0001875;6.30e-26;2!UBERON:0006514;6.30e-26;2!UBERON:0001869;2.60e-13;32!UBERON:0001893;5.11e-12;34!UBERON:0002021;3.10e-11;5!UBERON:0002780;1.35e-09;41!UBERON:0001890;1.35e-09;41!UBERON:0000200;1.38e-09;6!UBERON:0009663;2.11e-08;7!UBERON:0002791;3.58e-07;32!UBERON:0001638;8.14e-07;9!UBERON:0003920;8.14e-07;9!UBERON:0002420;8.14e-07;9!UBERON:0000125;8.14e-07;9!UBERON:0007245;8.14e-07;9!UBERON:0002308;8.14e-07;9!UBERON:0010009;8.14e-07;9!UBERON:0010011;8.14e-07;9!UBERON:0004582;8.14e-07;9!UBERON:0000454;8.14e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0007190;3.10e-50;1!UBERON:0001875;6.30e-26;2!UBERON:0006514;6.30e-26;2!UBERON:0001869;2.60e-13;32!UBERON:0001893;5.11e-12;34!UBERON:0002021;3.10e-11;5!UBERON:0002780;1.35e-09;41!UBERON:0001890;1.35e-09;41!UBERON:0000200;1.38e-09;6!UBERON:0009663;2.11e-08;7!UBERON:0002791;3.58e-07;32!UBERON:0001638;8.14e-07;9!UBERON:0003920;8.14e-07;9!UBERON:0002420;8.14e-07;9!UBERON:0000125;8.14e-07;9!UBERON:0007245;8.14e-07;9!UBERON:0002308;8.14e-07;9!UBERON:0010009;8.14e-07;9!UBERON:0010011;8.14e-07;9!UBERON:0004582;8.14e-07;9!UBERON:0000454;8.14e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007190,6.58e-50,1;UBERON:0001875,7.14e-26,2;UBERON:0006514,7.14e-26,2;UBERON:0001869,2.31e-14,32;UBERON:0001893,1.35e-13,34;UBERON:0002780,1.73e-11,41;UBERON:0001890,1.73e-11,41;UBERON:0003080,1.73e-11,41;UBERON:0006240,1.73e-11,41;UBERON:0002021,2.94e-11,5;UBERON:0000200,1.57e-09,6;UBERON:0000073,3.93e-09,53;UBERON:0002616,3.93e-09,53;UBERON:0001049,1.07e-08,56;UBERON:0005068,1.07e-08,56;UBERON:0006241,1.07e-08,56;UBERON:0007135,1.07e-08,56;UBERON:0009663,2.18e-08,7;UBERON:0003056,4.61e-08,61;UBERON:0000955,3.10e-07,68;UBERON:0006238,3.10e-07,68;UBERON:0002791,4.74e-07,32;UBERON:0001638,7.48e-07,9;UBERON:0003920,7.48e-07,9;UBERON:0004582,7.48e-07,9;UBERON:0002420,8.37e-07,9;UBERON:0000125,8.37e-07,9;UBERON:0007245,8.37e-07,9;UBERON:0002308,8.37e-07,9;UBERON:0010009,8.37e-07,9;UBERON:0010011,8.37e-07,9;UBERON:0000454,8.37e-07,9 | |||
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|short_description=p17@SYNJ2 | |short_description=p17@SYNJ2 | ||
}} | }} |
Latest revision as of 11:13, 16 September 2015
Short description: | p17@SYNJ2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_SYNJ2_5end |
Coexpression cluster: | NA |
Association with transcript: | 63bp_to_uc003qqy.1_5end |
EntrezGene: | SYNJ2 |
HGNC: | 11504 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vein endothelial cell | 1.22e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
paracentral gyrus | 6.58e-50 | 1 |
globus pallidus | 7.14e-26 | 2 |
pallidum | 7.14e-26 | 2 |
cerebral hemisphere | 2.31e-14 | 32 |
telencephalon | 1.35e-13 | 34 |
regional part of forebrain | 1.73e-11 | 41 |
forebrain | 1.73e-11 | 41 |
anterior neural tube | 1.73e-11 | 41 |
future forebrain | 1.73e-11 | 41 |
occipital lobe | 2.94e-11 | 5 |
gyrus | 1.57e-09 | 6 |
regional part of nervous system | 3.93e-09 | 53 |
regional part of brain | 3.93e-09 | 53 |
neural tube | 1.07e-08 | 56 |
neural rod | 1.07e-08 | 56 |
future spinal cord | 1.07e-08 | 56 |
neural keel | 1.07e-08 | 56 |
telencephalic nucleus | 2.18e-08 | 7 |
pre-chordal neural plate | 4.61e-08 | 61 |
brain | 3.10e-07 | 68 |
future brain | 3.10e-07 | 68 |
regional part of telencephalon | 4.74e-07 | 32 |
vein | 7.48e-07 | 9 |
venous blood vessel | 7.48e-07 | 9 |
venous system | 7.48e-07 | 9 |
basal ganglion | 8.37e-07 | 9 |
neural nucleus | 8.37e-07 | 9 |
nuclear complex of neuraxis | 8.37e-07 | 9 |
nucleus of brain | 8.37e-07 | 9 |
aggregate regional part of brain | 8.37e-07 | 9 |
collection of basal ganglia | 8.37e-07 | 9 |
cerebral subcortex | 8.37e-07 | 9 |