FFCP PHASE1:Hg19::chr6:158438236..158438243,+: Difference between revisions
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|id=chr6:158438236..158438243,+
|short_description=p17@SYNJ2
|description=CAGE_peak_17_at_SYNJ2_5end
|association_with_transcript=63bp_to_uc003qqy.1_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8871 | |EntrezGene=8871 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11504 | |HGNC=11504 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=63bp_to_uc003qqy.1_5end | |||
|cluster_id=chr6:158438236..158438243,+ | |||
|description=CAGE_peak_17_at_SYNJ2_5end | |||
|id=chr6:158438236..158438243,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002543;1.38e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002543,1.22e-09,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0007190;3.10e-50;1!UBERON:0001875;6.30e-26;2!UBERON:0006514;6.30e-26;2!UBERON:0001869;2.60e-13;32!UBERON:0001893;5.11e-12;34!UBERON:0002021;3.10e-11;5!UBERON:0002780;1.35e-09;41!UBERON:0001890;1.35e-09;41!UBERON:0000200;1.38e-09;6!UBERON:0009663;2.11e-08;7!UBERON:0002791;3.58e-07;32!UBERON:0001638;8.14e-07;9!UBERON:0003920;8.14e-07;9!UBERON:0002420;8.14e-07;9!UBERON:0000125;8.14e-07;9!UBERON:0007245;8.14e-07;9!UBERON:0002308;8.14e-07;9!UBERON:0010009;8.14e-07;9!UBERON:0010011;8.14e-07;9!UBERON:0004582;8.14e-07;9!UBERON:0000454;8.14e-07;9 | |||
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| ||
|short_description=p17@SYNJ2 | |||
}} | }} |
Latest revision as of 11:13, 16 September 2015
Short description: | p17@SYNJ2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_SYNJ2_5end |
Coexpression cluster: | NA |
Association with transcript: | 63bp_to_uc003qqy.1_5end |
EntrezGene: | SYNJ2 |
HGNC: | 11504 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vein endothelial cell | 1.22e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
paracentral gyrus | 6.58e-50 | 1 |
globus pallidus | 7.14e-26 | 2 |
pallidum | 7.14e-26 | 2 |
cerebral hemisphere | 2.31e-14 | 32 |
telencephalon | 1.35e-13 | 34 |
regional part of forebrain | 1.73e-11 | 41 |
forebrain | 1.73e-11 | 41 |
anterior neural tube | 1.73e-11 | 41 |
future forebrain | 1.73e-11 | 41 |
occipital lobe | 2.94e-11 | 5 |
gyrus | 1.57e-09 | 6 |
regional part of nervous system | 3.93e-09 | 53 |
regional part of brain | 3.93e-09 | 53 |
neural tube | 1.07e-08 | 56 |
neural rod | 1.07e-08 | 56 |
future spinal cord | 1.07e-08 | 56 |
neural keel | 1.07e-08 | 56 |
telencephalic nucleus | 2.18e-08 | 7 |
pre-chordal neural plate | 4.61e-08 | 61 |
brain | 3.10e-07 | 68 |
future brain | 3.10e-07 | 68 |
regional part of telencephalon | 4.74e-07 | 32 |
vein | 7.48e-07 | 9 |
venous blood vessel | 7.48e-07 | 9 |
venous system | 7.48e-07 | 9 |
basal ganglion | 8.37e-07 | 9 |
neural nucleus | 8.37e-07 | 9 |
nuclear complex of neuraxis | 8.37e-07 | 9 |
nucleus of brain | 8.37e-07 | 9 |
aggregate regional part of brain | 8.37e-07 | 9 |
collection of basal ganglia | 8.37e-07 | 9 |
cerebral subcortex | 8.37e-07 | 9 |